Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009835

Physical Location & Seq

Genomic Coordinates Reverse (-)

54459316 .. 54461028

Gene Structure 1713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0399800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCAGAAGAAGGAGGAGGAGTCCTTTAAAACCCACGAGACTCGCCGCATTCTCCGAATCGCTGATATTCTACTCGACGACGGAGACGGAGACGGAGACTTGTTTGAAATGGACCAACCCCGAAAGACCGACCACCACCTCACCATTATACAGTGCTCCACGCCGCGCCGGATCGTTTCCCGATGGTTCTCCGCTCTCAAGCGTGCCAGACACAGAAAAGTTAACGCACGGAGCGACAAAAGAGACAACGAAATCGTCAAAGAAAGCAATCTCCCCCACACCAGGTGTTCCACAAATGGTTTCAACAGCGACGGAGGGTCAGGACGTTGTGGTATGGATTCGAGCTCGTTCAATTTGGGGGTGGCGTGTGGTCTGCTTTGTGTGGTTGCTGCTGGTAAAAATGAACTCAACAAGATGGTGGAATTGCGGACACAGATGGAGCTGATTCTCCAAAATGCCAAACAGGAAATGGGCGGTAAGAATGCACTTACAAACAACCCTAAGCCGGCGGCGGAGTCTAATGAGATTAATTTCACTTCTTTCTCCACCAATTTCCAACAAGCATCGACCTCTGGTAGCCAGTTTTCTCTTCAATCTGTTGGCGGCCGCGACGAGTGCTCAGATTATTGTGTTGGAAATGAAGGAGAAGGAGACGAATACGTGGCAGGAATAGATCAACTAGAGGCAGAGCTTCGAGCCGAATTAGAAAGAATGCAGCTCCAATTGGATTCAGAAAGTAATTCATCCATTTCAAAGTCCCCACAGCAGCAGAGGCTAGAGGGTATGGGAGACATTGGTTCAAACCGTCGTGAAGGGGACTCAGCATCAACGGATTACAGTGATCATGAAATGCTCTGGGGCTGTGGATTTGCTCCGCTTGAACTTGAGAGAAAATTGCATCTAGTGCTGGAAGCGAGACAAGAAGAGCGGATAAAAGAACTGGAAGATGCTTTAGAATGTGCAGAGCAGAAGCTTGAGGAGAAAGAAAGAGAGGTTTCTTGGTGGAGAAACGCTGCAATACTTATGTCAGGCCGTGATCCAGAACCTTCATATTCGCATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

354

Amino Acids

39.7

Weight (kDa)

5.05

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32600 AT4G32600
fragaria_vesca	FvH4_2g30130 FvH4_2g30130 FvH4_2g30130
malus_domestica	MD15G1115700.v1.1
prunus_persica	Prupe.1G467000_v2.0.a1 Prupe.1G467000_v2.0.a1 Prupe.1G467000_v2.0.a1
pyrus_communis	pycom15g10430
rosa_chinensis	RchiOBHm_Chr6g0312801
rosa_laevigata	RLG00000010297
rosa_multiflora	Rmu_sc0008049.1_g000004
rosa_roxburghii	Rroxscaffold_7G00156480
rosa_rugosa	Rorug06G0399700 Rorug06G0399800
rosa_samantha	Rh6AG516800 Rh6BG528200 Rh6CG532900 Rh6DG519300
rosa_wichuraiana	Rw6G044890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	194, 928
AccII	CGCG	2 cut(s)	166, 609
AclWI	GGATC	2 cut(s)	179, 1031
AcoI	YGGCCR	1 cut(s)	604
AdeI	CACNNNGTG	1 cut(s)	285
AfiI	CCNNNNNNNGG	2 cut(s)	282, 505
AgsI	TTSAA	7 cut(s)	107, 304, 352, 593, 753, 801, 881
AhdI	GACNNNNNGTC	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	5 cut(s)	345, 442, 691, 718, 973
AluI	AGCT	5 cut(s)	345, 442, 691, 718, 973
Alw21I	GWGCWC	3 cut(s)	158, 347, 620
Alw26I	GTCTC	8 cut(s)	32, 78, 84, 90, 237, 645, 783, 910
AlwI	GGATC	2 cut(s)	179, 1031
AoxI	GGCC	2 cut(s)	604, 1030
ApeKI	GCWGC	4 cut(s)	389, 715, 766, 1013
AseI	ATTAAT	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	347
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	3 cut(s)	158, 347, 620
BbvI	GCAGC	4 cut(s)	376, 727, 778, 1000
BccI	CCATC	3 cut(s)	177, 409, 430
BceAI	ACGGC	1 cut(s)	1017
BciT130I	CCWGG	1 cut(s)	283
BclI	TGATCA	1 cut(s)	841
BcoDI	GTCTC	8 cut(s)	32, 78, 84, 90, 237, 645, 783, 910
BfaI	CTAG	3 cut(s)	680, 776, 902
BisI	GCNGC	9 cut(s)	46, 164, 390, 510, 604, 607, 716, 767, 1014
BlsI	GCNGC	9 cut(s)	47, 165, 391, 511, 605, 608, 717, 768, 1015
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	112
BmeRI	GACNNNNNGTC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	4 cut(s)	572, 833, 907, 937
Bpu10I	CCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	3 cut(s)	182, 905, 995
BsaAI	YACGTR	1 cut(s)	661
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	282, 505
Bse118I	RCCGGY	1 cut(s)	505
Bse1I	ACTGG	2 cut(s)	580, 945
BseBI	CCWGG	1 cut(s)	283
BseGI	GGATG	1 cut(s)	743
BseLI	CCNNNNNNNGG	2 cut(s)	282, 505
BseMII	CTCAG	2 cut(s)	633, 834
BseNI	ACTGG	2 cut(s)	580, 945
BseRI	GAGGAG	3 cut(s)	29, 32, 992
BseX3I	CGGCCG	1 cut(s)	604
BseXI	GCAGC	4 cut(s)	376, 727, 778, 1000
BsgI	GTGCAG	1 cut(s)	981
Bsh1236I	CGCG	2 cut(s)	166, 609
Bsh1285I	CGRYCG	1 cut(s)	607
BshFI	GGCC	2 cut(s)	606, 1032
BsiEI	CGRYCG	1 cut(s)	607
BsiHKAI	GWGCWC	3 cut(s)	158, 347, 620
BsiSI	CCGG	2 cut(s)	169, 506
BslFI	GGGAC	2 cut(s)	742, 830
BslI	CCNNNNNNNGG	2 cut(s)	282, 505
BsmAI	GTCTC	8 cut(s)	32, 78, 84, 90, 237, 645, 783, 910
BsmBI	CGTCTC	3 cut(s)	78, 84, 645
BsmFI	GGGAC	2 cut(s)	742, 830
BsmI	GAATGC	3 cut(s)	48, 487, 717
BsnI	GGCC	2 cut(s)	606, 1032
Bsp1286I	GDGCHC	3 cut(s)	158, 347, 620
Bsp143I	GATC	4 cut(s)	171, 673, 841, 1036
BspANI	GGCC	2 cut(s)	606, 1032
BspCNI	CTCAG	2 cut(s)	632, 833
BspFNI	CGCG	2 cut(s)	166, 609
BspHI	TCATGA	1 cut(s)	844
BspPI	GGATC	2 cut(s)	179, 1031
BspQI	GCTCTTC	1 cut(s)	918
BsrBI	CCGCTC	2 cut(s)	194, 928
BsrFI	RCCGGY	1 cut(s)	505
BsrI	ACTGG	2 cut(s)	580, 945
BssAI	RCCGGY	1 cut(s)	505
BssMI	GATC	4 cut(s)	171, 673, 841, 1036
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	3 cut(s)	153, 806, 839
Bst6I	CTCTTC	2 cut(s)	594, 918
BstAPI	GCANNNNNTGC	1 cut(s)	904
BstBAI	YACGTR	1 cut(s)	661
BstC8I	GCNNGC	2 cut(s)	204, 507
BstDEI	CTNAG	3 cut(s)	501, 619, 820
BstF5I	GGATG	1 cut(s)	743
BstFNI	CGCG	2 cut(s)	166, 609
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	4 cut(s)	174, 676, 844, 1039
BstMAI	GTCTC	8 cut(s)	32, 78, 84, 90, 237, 645, 783, 910
BstMBI	GATC	4 cut(s)	171, 673, 841, 1036
BstMCI	CGRYCG	1 cut(s)	607
BstMWI	GCNNNNNNNGC	3 cut(s)	615, 772, 904
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	281
BstUI	CGCG	2 cut(s)	166, 609
BstV1I	GCAGC	4 cut(s)	376, 727, 778, 1000
BstZI	CGGCCG	1 cut(s)	604
BsuRI	GGCC	2 cut(s)	606, 1032
BtsCI	GGATG	1 cut(s)	743
BtsIMutI	CAGTG	2 cut(s)	158, 844
Cac8I	GCNNGC	2 cut(s)	204, 507
CciI	TCATGA	1 cut(s)	844
CciNI	GCGGCCGC	1 cut(s)	604
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	112
CsiI	ACCWGGT	1 cut(s)	281
CviAII	CATG	2 cut(s)	845, 1058
DdeI	CTNAG	3 cut(s)	501, 619, 820
DpnI	GATC	4 cut(s)	173, 675, 843, 1038
DpnII	GATC	4 cut(s)	171, 673, 841, 1036
DraI	TTTAAA	1 cut(s)	28
DraIII	CACNNNGTG	1 cut(s)	285
DriI	GACNNNNNGTC	1 cut(s)	316
EaeI	YGGCCR	1 cut(s)	604
EagI	CGGCCG	1 cut(s)	604
Eam1104I	CTCTTC	2 cut(s)	594, 918
Eam1105I	GACNNNNNGTC	1 cut(s)	316
EarI	CTCTTC	2 cut(s)	594, 918
EciI	GGCGGA	1 cut(s)	527
Ecl136II	GAGCTC	1 cut(s)	345
EclXI	CGGCCG	1 cut(s)	604
Eco24I	GRGCYC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	112
Eco52I	CGGCCG	1 cut(s)	604
Eco53kI	GAGCTC	1 cut(s)	345
EcoICRI	GAGCTC	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	347
Esp3I	CGTCTC	3 cut(s)	78, 84, 645
FaeI	CATG	2 cut(s)	848, 1061
FaiI	YATR	7 cut(s)	149, 335, 785, 846, 1025, 1051, 1059
FaqI	GGGAC	2 cut(s)	742, 830
FatI	CATG	2 cut(s)	844, 1057
FbaI	TGATCA	1 cut(s)	841
Fnu4HI	GCNGC	9 cut(s)	46, 164, 390, 510, 604, 607, 716, 767, 1014
FokI	GGATG	1 cut(s)	730
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	9 cut(s)	46, 164, 390, 510, 604, 607, 716, 767, 1014
FspBI	CTAG	3 cut(s)	680, 776, 902
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	9 cut(s)	46, 164, 390, 510, 604, 607, 716, 767, 1014
HaeIII	GGCC	2 cut(s)	606, 1032
HapII	CCGG	2 cut(s)	169, 506
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	848, 1061
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	971
HinfI	GANTC	8 cut(s)	20, 40, 57, 338, 445, 515, 728, 818
HpaI	GTTAAC	1 cut(s)	223
HpaII	CCGG	2 cut(s)	169, 506
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	56, 622, 733
Hpy188III	TCNNGA	5 cut(s)	180, 321, 809, 845, 1040
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	5 cut(s)	80, 83, 314, 614, 810
HpyAV	CCTTC	5 cut(s)	4, 635, 641, 806, 1056
HpyCH4III	ACNGT	3 cut(s)	153, 806, 839
HpyCH4IV	ACGT	2 cut(s)	325, 660
HpyCH4V	TGCA	6 cut(s)	4, 485, 715, 898, 962, 1016
HpyF10VI	GCNNNNNNNGC	3 cut(s)	615, 772, 904
HpyF3I	CTNAG	3 cut(s)	501, 619, 820
HpySE526I	ACGT	2 cut(s)	325, 660
Hsp92II	CATG	2 cut(s)	848, 1061
HspAI	GCGC	1 cut(s)	166
KroI	GCCGGC	1 cut(s)	505
KroNI	GCCGGC	1 cut(s)	507
Ksp22I	TGATCA	1 cut(s)	841
KspAI	GTTAAC	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	171, 673, 841, 1036
LguI	GCTCTTC	1 cut(s)	918
LmnI	GCTCC	5 cut(s)	161, 231, 439, 723, 877
Lsp1109I	GCAGC	4 cut(s)	376, 727, 778, 1000
LweI	GCATC	4 cut(s)	572, 833, 907, 937
MabI	ACCWGGT	1 cut(s)	281
MaeI	CTAG	3 cut(s)	680, 776, 902
MaeII	ACGT	2 cut(s)	325, 660
MalI	GATC	4 cut(s)	173, 675, 843, 1038
MbiI	CCGCTC	2 cut(s)	194, 928
MboI	GATC	4 cut(s)	171, 673, 841, 1036
MboII	GAAGA	4 cut(s)	19, 581, 935, 956
MfeI	CAATTG	1 cut(s)	722
MhlI	GDGCHC	3 cut(s)	158, 347, 620
MluCI	AATT	8 cut(s)	352, 422, 529, 550, 701, 722, 739, 893
MlyI	GAGTC	4 cut(s)	29, 34, 524, 812
MmeI	TCCRAC	2 cut(s)	580, 613
MroNI	GCCGGC	1 cut(s)	505
MseI	TTAA	3 cut(s)	27, 222, 528
MspI	CCGG	2 cut(s)	169, 506
MspR9I	CCNGG	1 cut(s)	283
MunI	CAATTG	1 cut(s)	722
Mva1269I	GAATGC	3 cut(s)	48, 487, 717
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	2 cut(s)	166, 609
MwoI	GCNNNNNNNGC	3 cut(s)	615, 772, 904
NaeI	GCCGGC	1 cut(s)	507
NdeII	GATC	4 cut(s)	171, 673, 841, 1036
NgoMIV	GCCGGC	1 cut(s)	505
NlaIII	CATG	2 cut(s)	848, 1061
NotI	GCGGCCGC	1 cut(s)	604
PagI	TCATGA	1 cut(s)	844
PciSI	GCTCTTC	1 cut(s)	918
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	3 cut(s)	48, 487, 717
PdiI	GCCGGC	1 cut(s)	507
PfeI	GAWTC	4 cut(s)	57, 338, 445, 728
PkrI	GCNGC	9 cut(s)	47, 165, 391, 511, 605, 608, 717, 768, 1015
PleI	GAGTC	4 cut(s)	28, 34, 523, 812
PpsI	GAGTC	4 cut(s)	28, 34, 523, 812
Ppu21I	YACGTR	1 cut(s)	661
PshBI	ATTAAT	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspPI	GGNCC	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	347
SapI	GCTCTTC	1 cut(s)	918
SaqAI	TTAA	3 cut(s)	27, 222, 528
SatI	GCNGC	9 cut(s)	46, 164, 390, 510, 604, 607, 716, 767, 1014
Sau3AI	GATC	4 cut(s)	171, 673, 841, 1036
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	4 cut(s)	29, 34, 524, 812
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	3 cut(s)	158, 347, 620
SexAI	ACCWGGT	1 cut(s)	281
SfaNI	GCATC	4 cut(s)	572, 833, 907, 937
SinI	GGWCC	1 cut(s)	112
SmlI	CTYRAG	3 cut(s)	197, 884, 974
SmoI	CTYRAG	3 cut(s)	197, 884, 974
Sse9I	AATT	8 cut(s)	352, 422, 529, 550, 701, 722, 739, 893
SspMI	CTAG	3 cut(s)	680, 776, 902
SstI	GAGCTC	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	3 cut(s)	153, 806, 839
TaiI	ACGT	2 cut(s)	328, 663
TaqI	TCGA	4 cut(s)	75, 341, 566, 694
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	8 cut(s)	352, 422, 529, 550, 701, 722, 739, 893
TauI	GCSGC	5 cut(s)	48, 166, 512, 606, 609
TfiI	GAWTC	4 cut(s)	57, 338, 445, 728
Tru1I	TTAA	3 cut(s)	27, 222, 528
Tru9I	TTAA	3 cut(s)	27, 222, 528
TscAI	CASTG	2 cut(s)	158, 844
TseI	GCWGC	4 cut(s)	389, 715, 766, 1013
TspDTI	ATGAA	5 cut(s)	417, 654, 732, 861, 1038
TspGWI	ACGGA	6 cut(s)	96, 102, 108, 244, 327, 845
TspRI	CASTG	2 cut(s)	158, 844
VpaK11BI	GGWCC	1 cut(s)	112
VspI	ATTAAT	1 cut(s)	528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XspI	CTAG	3 cut(s)	680, 776, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.