Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008049.1

Orthogroup ID

OG0009835

Physical Location & Seq

Genomic Coordinates Reverse (-)

12080 .. 14658

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008049.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

atggatgttggctcattgaagcttcaacttgaaagtcaaacttacacgaccccgttgttaatggagcaatctcgaccagaaaatattgcaagcaacgagcacattattgacatagctgggagtgagcatgcctcctcatctagcttgcctcatggtagatctttaaatggcctaaatgccacacagcaagacagaccttcaagtagtccacgggcacccgtatcccaaccttcaatctttacttctaatggatcaaactctagaaacacttcagtggcaaggagaggagagactcgtcgccgcagaagtccgttgaattctggaatatggatatctattgaactggttcttactgtgagccaaatcgttgcatctattgtcgttttgtctttatcaaggaatgaacatccacgcactccattgtttgcatggattgttggttatgcatctggatgtgttgctactcttcctcttctttattggcgctatcgtcatcgcaaccaggtctcagaacaagattctgttcaagctcgtcagaattctcagctatcggcaagaccattttcactctctctatctagggcttcagaaggagaagatcttcagactgccactgcaacccatagaagcaatcaaagttcggcagtactaagcagaagactcaaagtacttgtggaatacttcaagatggcgctggattgtttctttgcggtttggttcgtggttggcaatgtttggatatttggaggacactcatctgcgaatgatgcacctaaccagttatgtatagtatttctgacatttagctgtatcggatacgccatgcctttcattttatgtgcaacaatctgctgctgtcttccctgtataatatcagttcttgggtttcgagaagatctgacacaagcacgaggagcaacgcctgaatcaattaatgctctcccaacatacaaattcaagttgaagaaaaacagaaatggcgataacagtgaaggtgttgtggctgcaggaactgagaaggagcgggtgatttctggagaggatgcggtttgttgcatctgcttggcaaagtatgcaaacaatgacgagctgagagagttgccatgttctcattttttccacaaggattgtgtggataagtggttgaagatcaatgcgtcttgtcctctttgcaagagtgaggttggtgagagccttttaggttctctctcctcgatcaatggcagtcagcaacggagtgatagcagggtgggcaatgaagtggctgaggtcaacactgttttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

428

Amino Acids

46.97

Weight (kDa)

8.3

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32600 AT4G32600
fragaria_vesca	FvH4_2g30130 FvH4_2g30130 FvH4_2g30130
malus_domestica	MD15G1115700.v1.1
prunus_persica	Prupe.1G467000_v2.0.a1 Prupe.1G467000_v2.0.a1 Prupe.1G467000_v2.0.a1
pyrus_communis	pycom15g10430
rosa_chinensis	RchiOBHm_Chr6g0312801
rosa_laevigata	RLG00000010297
rosa_multiflora	Rmu_sc0008049.1_g000004
rosa_roxburghii	Rroxscaffold_7G00156480
rosa_rugosa	Rorug06G0399700 Rorug06G0399800
rosa_samantha	Rh6AG516800 Rh6BG528200 Rh6CG532900 Rh6DG519300
rosa_wichuraiana	Rw6G044890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccBSI	CCGCTC	1 cut(s)	1024
AciI	CCGC	4 cut(s)	301, 710, 1024, 1046
AclWI	GGATC	1 cut(s)	259
AcsI	RAATTY	3 cut(s)	316, 538, 953
AcuI	CTGAAG	3 cut(s)	255, 570, 587
AfaI	GTAC	2 cut(s)	648, 669
AjnI	CCWGG	1 cut(s)	501
AleI	CACNNNNGTG	1 cut(s)	272
AluBI	AGCT	7 cut(s)	22, 116, 144, 530, 547, 807, 1090
AluI	AGCT	7 cut(s)	22, 116, 144, 530, 547, 807, 1090
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	284, 511
AlwI	GGATC	1 cut(s)	259
AlwNI	CAGNNNCTG	1 cut(s)	1013
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	852, 1004
ApoI	RAATTY	3 cut(s)	316, 538, 953
AseI	ATTAAT	1 cut(s)	933
Asp700I	GAANNNNTTC	3 cut(s)	268, 345, 600
AspLEI	GCGC	2 cut(s)	486, 694
AsuHPI	GGTGA	2 cut(s)	1039, 1199
BaeGI	GKGCMC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	909
BbsI	GAAGAC	2 cut(s)	664, 851
Bbv12I	GWGCWC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	1266
BbvI	GCAGC	2 cut(s)	839, 991
BccI	CCATC	1 cut(s)	682
BciT130I	CCWGG	1 cut(s)	503
BciVI	GTATCC	2 cut(s)	232, 809
BcoDI	GTCTC	2 cut(s)	284, 511
BfaI	CTAG	3 cut(s)	141, 261, 579
BfmI	CTRYAG	1 cut(s)	1005
BfoI	RGCGCY	2 cut(s)	487, 695
BfuI	GTATCC	2 cut(s)	232, 809
BglII	AGATCT	3 cut(s)	158, 598, 895
BisI	GCNGC	3 cut(s)	301, 853, 1005
BlsI	GCNGC	3 cut(s)	302, 854, 1006
BmcAI	AGTACT	2 cut(s)	648, 669
Bme1390I	CCNGG	1 cut(s)	503
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	5 cut(s)	380, 455, 757, 1033, 1065
BpiI	GAAGAC	2 cut(s)	664, 851
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	1 cut(s)	1056
Bpu10I	CCTNAGC	1 cut(s)	1266
BsaI	GGTCTC	1 cut(s)	511
BsaJI	CCNNGG	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	348, 778
Bse3DI	GCAATG	2 cut(s)	736, 1261
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	4 cut(s)	10, 406, 458, 1048
BseMI	GCAATG	2 cut(s)	736, 1261
BseMII	CTCAG	5 cut(s)	522, 557, 1005, 1082, 1257
BseNI	ACTGG	2 cut(s)	348, 778
BseRI	GAGGAG	4 cut(s)	124, 300, 927, 1201
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	839, 991
BseYI	CCCAGC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	102
BsmAI	GTCTC	2 cut(s)	284, 511
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	511
Bsp1286I	GDGCHC	2 cut(s)	102, 217
Bsp143I	GATC	6 cut(s)	158, 251, 598, 895, 1149, 1215
BspACI	CCGC	4 cut(s)	301, 710, 1024, 1046
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	5 cut(s)	521, 556, 1006, 1083, 1258
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	1009
BspPI	GGATC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	511
BsrBI	CCGCTC	1 cut(s)	1024
BsrDI	GCAATG	2 cut(s)	736, 1261
BsrI	ACTGG	2 cut(s)	348, 778
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	6 cut(s)	158, 251, 598, 895, 1149, 1215
BssSI	CACGAG	1 cut(s)	909
Bst2BI	CACGAG	1 cut(s)	909
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	3 cut(s)	355, 989, 1279
Bst6I	CTCTTC	2 cut(s)	471, 477
BstAPI	GCANNNNNTGC	1 cut(s)	1073
BstC8I	GCNNGC	3 cut(s)	91, 129, 146
BstDEI	CTNAG	6 cut(s)	508, 543, 650, 1014, 1091, 1266
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	4 cut(s)	10, 406, 458, 1048
BstH2I	RGCGCY	2 cut(s)	487, 695
BstHHI	GCGC	2 cut(s)	486, 694
BstKTI	GATC	6 cut(s)	161, 254, 601, 898, 1152, 1218
BstMAI	GTCTC	2 cut(s)	284, 511
BstMBI	GATC	6 cut(s)	158, 251, 598, 895, 1149, 1215
BstMWI	GCNNNNNNNGC	4 cut(s)	767, 914, 1073, 1251
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	501
BstSFI	CTRYAG	1 cut(s)	1005
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	839, 991
BstV2I	GAAGAC	2 cut(s)	664, 851
BstX2I	RGATCY	3 cut(s)	158, 598, 895
BstYI	RGATCY	3 cut(s)	158, 598, 895
BsuI	GTATCC	2 cut(s)	232, 809
BsuRI	GGCC	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	209
BtgZI	GCGATG	1 cut(s)	479
BtsCI	GGATG	4 cut(s)	10, 406, 458, 1048
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	4 cut(s)	279, 612, 994, 1275
Cac8I	GCNNGC	3 cut(s)	91, 129, 146
CaiI	CAGNNNCTG	1 cut(s)	1013
CfoI	GCGC	2 cut(s)	486, 694
CseI	GACGC	1 cut(s)	1146
CsiI	ACCWGGT	1 cut(s)	501
Csp6I	GTAC	2 cut(s)	647, 668
CspCI	CAANNNNNGTGG	2 cut(s)	1109, 1144
CviAII	CATG	5 cut(s)	128, 152, 429, 823, 1104
CviQI	GTAC	2 cut(s)	647, 668
DdeI	CTNAG	6 cut(s)	508, 543, 650, 1014, 1091, 1266
DpnI	GATC	6 cut(s)	160, 253, 600, 897, 1151, 1217
DpnII	GATC	6 cut(s)	158, 251, 598, 895, 1149, 1215
DraI	TTTAAA	1 cut(s)	165
Eam1104I	CTCTTC	2 cut(s)	471, 477
EarI	CTCTTC	2 cut(s)	471, 477
Eco31I	GGTCTC	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	333
Eco57I	CTGAAG	3 cut(s)	255, 570, 587
EcoRI	GAATTC	2 cut(s)	316, 538
EcoRII	CCWGG	1 cut(s)	501
EcoRV	GATATC	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	448
FaeI	CATG	5 cut(s)	131, 155, 432, 826, 1107
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FatI	CATG	5 cut(s)	127, 151, 428, 822, 1103
FauI	CCCGC	1 cut(s)	1017
Fnu4HI	GCNGC	3 cut(s)	301, 853, 1005
FokI	GGATG	4 cut(s)	17, 393, 465, 1055
Fsp4HI	GCNGC	3 cut(s)	301, 853, 1005
FspBI	CTAG	3 cut(s)	141, 261, 579
GlaI	GCGC	2 cut(s)	485, 693
GluI	GCNGC	3 cut(s)	301, 853, 1005
GsaI	CCCAGC	1 cut(s)	120
GsuI	CTGGAG	1 cut(s)	1056
HaeII	RGCGCY	2 cut(s)	487, 695
HaeIII	GGCC	1 cut(s)	171
HgaI	GACGC	1 cut(s)	1146
HhaI	GCGC	2 cut(s)	486, 694
Hin1II	CATG	5 cut(s)	131, 155, 432, 826, 1107
Hin6I	GCGC	2 cut(s)	484, 692
HinP1I	GCGC	2 cut(s)	484, 692
HincII	GTYRAC	1 cut(s)	1273
HindII	GTYRAC	1 cut(s)	1273
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	4 cut(s)	292, 518, 660, 926
HphI	GGTGA	2 cut(s)	1039, 1199
Hpy166II	GTNNAC	2 cut(s)	209, 1273
Hpy188I	TCNGA	7 cut(s)	511, 537, 589, 606, 798, 815, 900
Hpy188III	TCNNGA	7 cut(s)	72, 261, 321, 450, 685, 890, 1035
Hpy8I	GTNNAC	2 cut(s)	209, 1273
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	5 cut(s)	207, 240, 584, 986, 1012
HpyCH4III	ACNGT	3 cut(s)	355, 989, 1279
HpyF10VI	GCNNNNNNNGC	4 cut(s)	767, 914, 1073, 1251
HpyF3I	CTNAG	6 cut(s)	508, 543, 650, 1014, 1091, 1266
Hsp92II	CATG	5 cut(s)	131, 155, 432, 826, 1107
HspAI	GCGC	2 cut(s)	484, 692
Kzo9I	GATC	6 cut(s)	158, 251, 598, 895, 1149, 1215
LmnI	GCTCC	3 cut(s)	64, 914, 1021
Lsp1109I	GCAGC	2 cut(s)	839, 991
LweI	GCATC	5 cut(s)	380, 455, 757, 1033, 1065
MabI	ACCWGGT	1 cut(s)	501
MaeI	CTAG	3 cut(s)	141, 261, 579
MalI	GATC	6 cut(s)	160, 253, 600, 897, 1151, 1217
MbiI	CCGCTC	1 cut(s)	1024
MboI	GATC	6 cut(s)	158, 251, 598, 895, 1149, 1215
MboII	GAAGA	9 cut(s)	458, 464, 593, 608, 669, 851, 905, 976, 1159
MflI	RGATCY	3 cut(s)	158, 598, 895
MhlI	GDGCHC	2 cut(s)	102, 217
MluCI	AATT	4 cut(s)	316, 538, 930, 953
MlyI	GAGTC	2 cut(s)	286, 654
Mph1103I	ATGCAT	1 cut(s)	448
MroXI	GAANNNNTTC	3 cut(s)	268, 345, 600
MseI	TTAA	3 cut(s)	59, 164, 933
MslI	CAYNNNNRTG	2 cut(s)	272, 451
MspR9I	CCNGG	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	4 cut(s)	767, 914, 1073, 1251
NdeII	GATC	6 cut(s)	158, 251, 598, 895, 1149, 1215
NlaIII	CATG	5 cut(s)	131, 155, 432, 826, 1107
NlaIV	GGNNCC	1 cut(s)	216
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	1 cut(s)	131
OliI	CACNNNNGTG	1 cut(s)	272
PaeI	GCATGC	1 cut(s)	131
PdmI	GAANNNNTTC	3 cut(s)	268, 345, 600
PfeI	GAWTC	2 cut(s)	518, 926
PkrI	GCNGC	3 cut(s)	302, 854, 1006
PleI	GAGTC	2 cut(s)	286, 654
PpsI	GAGTC	2 cut(s)	286, 654
PshBI	ATTAAT	1 cut(s)	933
Psp6I	CCWGG	1 cut(s)	501
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	216
PstI	CTGCAG	1 cut(s)	1009
PstNI	CAGNNNCTG	1 cut(s)	1013
PsuI	RGATCY	3 cut(s)	158, 598, 895
RsaI	GTAC	2 cut(s)	648, 669
RsaNI	GTAC	2 cut(s)	647, 668
RseI	CAYNNNNRTG	2 cut(s)	272, 451
SaqAI	TTAA	3 cut(s)	59, 164, 933
SatI	GCNGC	3 cut(s)	301, 853, 1005
Sau3AI	GATC	6 cut(s)	158, 251, 598, 895, 1149, 1215
ScaI	AGTACT	2 cut(s)	648, 669
SchI	GAGTC	2 cut(s)	286, 654
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	2 cut(s)	102, 217
SexAI	ACCWGGT	1 cut(s)	501
SfaNI	GCATC	5 cut(s)	380, 455, 757, 1033, 1065
SfcI	CTRYAG	1 cut(s)	1005
SmiMI	CAYNNNNRTG	2 cut(s)	272, 451
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	4 cut(s)	316, 538, 930, 953
SsiI	CCGC	4 cut(s)	301, 710, 1024, 1046
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	3 cut(s)	141, 261, 579
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	3 cut(s)	355, 989, 1279
TaqI	TCGA	3 cut(s)	73, 889, 1214
TasI	AATT	4 cut(s)	316, 538, 930, 953
TatI	WGTACW	2 cut(s)	646, 667
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	518, 926
Tru1I	TTAA	3 cut(s)	59, 164, 933
Tru9I	TTAA	3 cut(s)	59, 164, 933
TscAI	CASTG	4 cut(s)	279, 619, 994, 1282
TseI	GCWGC	2 cut(s)	852, 1004
TspDTI	ATGAA	3 cut(s)	417, 820, 1272
TspGWI	ACGGA	2 cut(s)	300, 1249
TspRI	CASTG	4 cut(s)	279, 619, 994, 1282
VspI	ATTAAT	1 cut(s)	933
XapI	RAATTY	3 cut(s)	316, 538, 953
XbaI	TCTAGA	1 cut(s)	260
XceI	RCATGY	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	426
XmnI	GAANNNNTTC	3 cut(s)	268, 345, 600
XspI	CTAG	3 cut(s)	141, 261, 579
ZrmI	AGTACT	2 cut(s)	648, 669
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.