Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009835

Physical Location & Seq

Genomic Coordinates Reverse (-)

66980244 .. 66984503

Gene Structure 4260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG519300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGATGTTGGCTCATTGAAGCTTCAACTTGAAAGTCAAACTTACACGACCCCGTTGTTAATGGAGCAATCTCGACCAGAAAATATTGCAAGCAACGAGCACATTATTGACATAGCTGGGAGTGAGCATGCCTCCTCATCTAGCTTGCCTCATGGTAGATCTTTAAATGGCCTAAATGCCACACAGCAAGACAGACCTTCAAGTAGTCCACGGGCACCCGTATCCCAACCTTCAATCTTTTCTTCTAATGGATCAAACTCTAGAAACACTTCAGTGGCAAGGAGAGGAGAGACTCGTCGCCGCAGAAGTCCGTTGAATTCTGGAATATGGATATCTATTGAACTGGTTCTTACTGTGAGCCAAATCGTTGCATCTATTGTCGTTTTGTCTTTATCAAGGAATGAACATCCACGCACTCCATTGTTTGCATGGATTGTTGGTTATGCATCTGGATGTGTTGCTACTCTTCCTCTTCTTTATTGGCGCTATCGTCATCGCAACCAGGTCTCAGAACAAGATTCTGTTCAAGCTCGTCAGAATTCTCAGCTATCGGCAAGACCATTTTCACTCTCTCTATCTAGGGCTTCAGAAGGAGAAGATCTTCAGACTGCCACTGCAACCCATAGAAGCAATCAAAGTTCGGCAGTACTAAGCAGAAGACTCAAAGTACTTGTGGAATACTTCAAGATGGCGTTGGATTGTTTCTTTGCGGTTTGGTTCGTGGTTGGCAATGTTTGGATATTTGGAGGACACTCATCTGCGAATGATGCACCTAACCAGTACAGGTTATGTATAGTATTTCTGACATTTAGCTGTATCGGATACGCCATGCCTTTCATTTTATGTGCAACAATCTGCTGCTGTCTTCCCTGTATAATATCAGTTCTTGGGTTTCGAGAAGATCTGACACAGGCACGAGGAGCAACGCCTGAATCAATTAATGCTCTCCCAACATACAAATTCAAGTTGAAGAAAAACAGAAATGGTGATAACAGTGAAGGTGTTGTGGCTGCAGGAACTGAGAAGGAGCGGGTGATTTCTGGAGAGGATGCGGTATGTATGATCTTACAAACTTGCATAATAAATTTAGGACCTATGCCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

368

Amino Acids

40.43

Weight (kDa)

8.78

Isoelectric Point (pI)

56.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32600 AT4G32600
fragaria_vesca	FvH4_2g30130 FvH4_2g30130 FvH4_2g30130
malus_domestica	MD15G1115700.v1.1
prunus_persica	Prupe.1G467000_v2.0.a1 Prupe.1G467000_v2.0.a1 Prupe.1G467000_v2.0.a1
pyrus_communis	pycom15g10430
rosa_chinensis	RchiOBHm_Chr6g0312801
rosa_laevigata	RLG00000010297
rosa_multiflora	Rmu_sc0008049.1_g000004
rosa_roxburghii	Rroxscaffold_7G00156480
rosa_rugosa	Rorug06G0399700 Rorug06G0399800
rosa_samantha	Rh6AG516800 Rh6BG528200 Rh6CG532900 Rh6DG519300
rosa_wichuraiana	Rw6G044890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccBSI	CCGCTC	1 cut(s)	1030
AciI	CCGC	4 cut(s)	301, 710, 1030, 1052
AclWI	GGATC	1 cut(s)	259
AcsI	RAATTY	4 cut(s)	316, 538, 959, 1084
AcuI	CTGAAG	3 cut(s)	255, 570, 587
AfaI	GTAC	3 cut(s)	648, 669, 782
AjnI	CCWGG	1 cut(s)	501
AleI	CACNNNNGTG	1 cut(s)	272
AluBI	AGCT	6 cut(s)	22, 116, 144, 530, 547, 813
AluI	AGCT	6 cut(s)	22, 116, 144, 530, 547, 813
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	284, 511
AlwI	GGATC	1 cut(s)	259
AlwNI	CAGNNNCTG	1 cut(s)	1019
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	858, 1010
ApoI	RAATTY	4 cut(s)	316, 538, 959, 1084
AseI	ATTAAT	1 cut(s)	939
Asp700I	GAANNNNTTC	3 cut(s)	268, 345, 600
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	1091
AsuHPI	GGTGA	2 cut(s)	998, 1045
AvaII	GGWCC	1 cut(s)	1091
BaeGI	GKGCMC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	915
BbsI	GAAGAC	2 cut(s)	664, 857
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	845, 997
BccI	CCATC	1 cut(s)	682
BciT130I	CCWGG	1 cut(s)	503
BciVI	GTATCC	2 cut(s)	232, 815
BcoDI	GTCTC	2 cut(s)	284, 511
BfaI	CTAG	4 cut(s)	141, 261, 579, 1105
BfmI	CTRYAG	1 cut(s)	1011
BfoI	RGCGCY	1 cut(s)	487
BfuI	GTATCC	2 cut(s)	232, 815
BglII	AGATCT	3 cut(s)	158, 598, 901
BisI	GCNGC	3 cut(s)	301, 859, 1011
BlsI	GCNGC	3 cut(s)	302, 860, 1012
BmcAI	AGTACT	2 cut(s)	648, 669
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	1 cut(s)	1091
BmgT120I	GGNCC	1 cut(s)	1091
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	4 cut(s)	380, 455, 757, 1039
BpiI	GAAGAC	2 cut(s)	664, 857
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	1 cut(s)	1062
BsaI	GGTCTC	1 cut(s)	511
BsaJI	CCNNGG	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	348, 778
Bse3DI	GCAATG	1 cut(s)	736
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	4 cut(s)	10, 406, 458, 1054
BseMI	GCAATG	1 cut(s)	736
BseMII	CTCAG	3 cut(s)	522, 557, 1011
BseNI	ACTGG	2 cut(s)	348, 778
BseRI	GAGGAG	3 cut(s)	124, 300, 933
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	845, 997
BseYI	CCCAGC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	102
BsmAI	GTCTC	2 cut(s)	284, 511
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	511
Bsp1286I	GDGCHC	2 cut(s)	102, 217
Bsp143I	GATC	5 cut(s)	158, 251, 598, 901, 1062
BspACI	CCGC	4 cut(s)	301, 710, 1030, 1052
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	3 cut(s)	521, 556, 1012
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	1015
BspPI	GGATC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	511
BsrBI	CCGCTC	1 cut(s)	1030
BsrDI	GCAATG	1 cut(s)	736
BsrI	ACTGG	2 cut(s)	348, 778
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	5 cut(s)	158, 251, 598, 901, 1062
BssSI	CACGAG	1 cut(s)	915
Bst2BI	CACGAG	1 cut(s)	915
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	2 cut(s)	355, 995
Bst6I	CTCTTC	2 cut(s)	471, 477
BstC8I	GCNNGC	3 cut(s)	91, 129, 146
BstDEI	CTNAG	4 cut(s)	508, 543, 650, 1020
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	4 cut(s)	10, 406, 458, 1054
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	5 cut(s)	161, 254, 601, 904, 1065
BstMAI	GTCTC	2 cut(s)	284, 511
BstMBI	GATC	5 cut(s)	158, 251, 598, 901, 1062
BstMWI	GCNNNNNNNGC	2 cut(s)	767, 920
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	501
BstSFI	CTRYAG	1 cut(s)	1011
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	845, 997
BstV2I	GAAGAC	2 cut(s)	664, 857
BstX2I	RGATCY	3 cut(s)	158, 598, 901
BstYI	RGATCY	3 cut(s)	158, 598, 901
BsuI	GTATCC	2 cut(s)	232, 815
BsuRI	GGCC	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	209
BtgZI	GCGATG	1 cut(s)	479
BtsCI	GGATG	4 cut(s)	10, 406, 458, 1054
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	3 cut(s)	279, 612, 1000
Cac8I	GCNNGC	3 cut(s)	91, 129, 146
CaiI	CAGNNNCTG	1 cut(s)	1019
CfoI	GCGC	1 cut(s)	486
Cfr13I	GGNCC	1 cut(s)	1091
CsiI	ACCWGGT	1 cut(s)	501
Csp6I	GTAC	3 cut(s)	647, 668, 781
CviAII	CATG	4 cut(s)	128, 152, 429, 829
CviQI	GTAC	3 cut(s)	647, 668, 781
DdeI	CTNAG	4 cut(s)	508, 543, 650, 1020
DpnI	GATC	5 cut(s)	160, 253, 600, 903, 1064
DpnII	GATC	5 cut(s)	158, 251, 598, 901, 1062
DraI	TTTAAA	1 cut(s)	165
Eam1104I	CTCTTC	2 cut(s)	471, 477
EarI	CTCTTC	2 cut(s)	471, 477
Eco31I	GGTCTC	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	1091
Eco57I	CTGAAG	3 cut(s)	255, 570, 587
EcoO109I	RGGNCCY	1 cut(s)	1091
EcoRI	GAATTC	2 cut(s)	316, 538
EcoRII	CCWGG	1 cut(s)	501
EcoRV	GATATC	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	448
FaeI	CATG	4 cut(s)	131, 155, 432, 832
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FatI	CATG	4 cut(s)	127, 151, 428, 828
FauI	CCCGC	1 cut(s)	1023
Fnu4HI	GCNGC	3 cut(s)	301, 859, 1011
FokI	GGATG	4 cut(s)	17, 393, 465, 1061
Fsp4HI	GCNGC	3 cut(s)	301, 859, 1011
FspBI	CTAG	4 cut(s)	141, 261, 579, 1105
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	3 cut(s)	301, 859, 1011
GsaI	CCCAGC	1 cut(s)	120
GsuI	CTGGAG	1 cut(s)	1062
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	1 cut(s)	171
HhaI	GCGC	1 cut(s)	486
Hin1II	CATG	4 cut(s)	131, 155, 432, 832
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	4 cut(s)	292, 518, 660, 932
HphI	GGTGA	2 cut(s)	998, 1045
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	7 cut(s)	511, 537, 589, 606, 804, 821, 906
Hpy188III	TCNNGA	7 cut(s)	72, 261, 321, 450, 685, 896, 1041
Hpy8I	GTNNAC	1 cut(s)	209
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	5 cut(s)	207, 240, 584, 992, 1018
HpyCH4III	ACNGT	2 cut(s)	355, 995
HpyCH4V	TGCA	9 cut(s)	89, 371, 428, 446, 617, 770, 848, 1013, 1077
HpyF10VI	GCNNNNNNNGC	2 cut(s)	767, 920
HpyF3I	CTNAG	4 cut(s)	508, 543, 650, 1020
Hsp92II	CATG	4 cut(s)	131, 155, 432, 832
HspAI	GCGC	1 cut(s)	484
Kzo9I	GATC	5 cut(s)	158, 251, 598, 901, 1062
LmnI	GCTCC	3 cut(s)	64, 920, 1027
Lsp1109I	GCAGC	2 cut(s)	845, 997
LweI	GCATC	4 cut(s)	380, 455, 757, 1039
MabI	ACCWGGT	1 cut(s)	501
MaeI	CTAG	4 cut(s)	141, 261, 579, 1105
MalI	GATC	5 cut(s)	160, 253, 600, 903, 1064
MbiI	CCGCTC	1 cut(s)	1030
MboI	GATC	5 cut(s)	158, 251, 598, 901, 1062
MboII	GAAGA	9 cut(s)	234, 458, 464, 593, 608, 669, 857, 911, 982
MflI	RGATCY	3 cut(s)	158, 598, 901
MhlI	GDGCHC	2 cut(s)	102, 217
MluCI	AATT	5 cut(s)	316, 538, 936, 959, 1084
MlyI	GAGTC	2 cut(s)	286, 654
MmeI	TCCRAC	1 cut(s)	675
MnlI	CCTC	8 cut(s)	142, 145, 159, 278, 480, 740, 911, 1039
Mph1103I	ATGCAT	1 cut(s)	448
MroXI	GAANNNNTTC	3 cut(s)	268, 345, 600
MseI	TTAA	3 cut(s)	59, 164, 939
MslI	CAYNNNNRTG	2 cut(s)	272, 451
MspR9I	CCNGG	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	2 cut(s)	767, 920
NdeII	GATC	5 cut(s)	158, 251, 598, 901, 1062
NlaIII	CATG	4 cut(s)	131, 155, 432, 832
NlaIV	GGNNCC	1 cut(s)	216
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	1 cut(s)	131
OliI	CACNNNNGTG	1 cut(s)	272
PaeI	GCATGC	1 cut(s)	131
PdmI	GAANNNNTTC	3 cut(s)	268, 345, 600
PfeI	GAWTC	2 cut(s)	518, 932
PkrI	GCNGC	3 cut(s)	302, 860, 1012
PleI	GAGTC	2 cut(s)	286, 654
PpsI	GAGTC	2 cut(s)	286, 654
PpuMI	RGGWCCY	1 cut(s)	1091
PshBI	ATTAAT	1 cut(s)	939
Psp5II	RGGWCCY	1 cut(s)	1091
Psp6I	CCWGG	1 cut(s)	501
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	1091
PspPPI	RGGWCCY	1 cut(s)	1091
PstI	CTGCAG	1 cut(s)	1015
PstNI	CAGNNNCTG	1 cut(s)	1019
PsuI	RGATCY	3 cut(s)	158, 598, 901
RsaI	GTAC	3 cut(s)	648, 669, 782
RsaNI	GTAC	3 cut(s)	647, 668, 781
RseI	CAYNNNNRTG	2 cut(s)	272, 451
SaqAI	TTAA	3 cut(s)	59, 164, 939
SatI	GCNGC	3 cut(s)	301, 859, 1011
Sau3AI	GATC	5 cut(s)	158, 251, 598, 901, 1062
Sau96I	GGNCC	1 cut(s)	1091
ScaI	AGTACT	2 cut(s)	648, 669
SchI	GAGTC	2 cut(s)	286, 654
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	2 cut(s)	102, 217
SexAI	ACCWGGT	1 cut(s)	501
SfaNI	GCATC	4 cut(s)	380, 455, 757, 1039
SfcI	CTRYAG	1 cut(s)	1011
SinI	GGWCC	1 cut(s)	1091
SmiMI	CAYNNNNRTG	2 cut(s)	272, 451
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	5 cut(s)	316, 538, 936, 959, 1084
SsiI	CCGC	4 cut(s)	301, 710, 1030, 1052
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	4 cut(s)	141, 261, 579, 1105
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	2 cut(s)	355, 995
TaqI	TCGA	2 cut(s)	73, 895
TasI	AATT	5 cut(s)	316, 538, 936, 959, 1084
TatI	WGTACW	3 cut(s)	646, 667, 780
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	518, 932
Tru1I	TTAA	3 cut(s)	59, 164, 939
Tru9I	TTAA	3 cut(s)	59, 164, 939
TscAI	CASTG	3 cut(s)	279, 619, 1000
TseI	GCWGC	2 cut(s)	858, 1010
TspDTI	ATGAA	2 cut(s)	417, 826
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	3 cut(s)	279, 619, 1000
VpaK11BI	GGWCC	1 cut(s)	1091
VspI	ATTAAT	1 cut(s)	939
XapI	RAATTY	4 cut(s)	316, 538, 959, 1084
XbaI	TCTAGA	1 cut(s)	260
XceI	RCATGY	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	426
XmnI	GAANNNNTTC	3 cut(s)	268, 345, 600
XspI	CTAG	4 cut(s)	141, 261, 579, 1105
ZrmI	AGTACT	2 cut(s)	648, 669
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.