Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009835

Physical Location & Seq

Genomic Coordinates Forward (+)

23314363 .. 23318390

Gene Structure 4028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g30130.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGACGTTGGCTCATTGAAGCTACAACTTGAAAGTCAGACATACACAACCCCTTTGTTAATGGAGCCATCTAGACCAGAAAATATTAACAGCAACGAGCATATTATTGACATAGCCAGGAGTGGAGATGCCTCCTCATCTAGCTTGCCTCAAGATAGATCTTTAAATAGCTTAAATGCCACAGAGCAAGACAGACCTTCAAGTACTCCACGCGCACCCACATTACAACCTTCAATCTTTTCTTCTAATGGATCGAACTCCAGAAACACTTCAGTGGCAAGGAGAGGAGAGACTCGTCGACGCAGAAGTCCGTTGAATTCTGGTATATGGATATCTATCGAACTGGTTCTTACGGTGAGCCAAATCGTTGCATCTATTGTCGTTTTGTCTTTGTCAAGGGATGAGCATCCTCGCACTCCATTGTTTGCATGGATTGTTGGTTATGCATCTGGATGTGTTGCTACTCTTCCTCTTCTTTATTGGCGCTATCGTCATCGCAACCAAGTCTCAGAACAAGATTCTACTCAAGCTCGTCAGAATTCTCAGCTATCGGCAAGACCATTTTCACTCTCTCTATCTAGGGCTTCAGAAGGAGAAGATCTTCAGACTGCTACTGCAACCCATAGAAGCAATCAAAGTTCGGCAGTACTAAGCAGAAGAGTCAAAGTACTTGTGGAATACTTCAAGATGGCATTGGATTGTTTCTTTGCGGTTTGGTTCGTGGTTGGCAATGTTTGGATATTTGGAGGACACTCATCTGCGAACGACGCTCCTAACCTGTACAGGTTATGTATAGTATTTCTGACATTTAGCTGTATCGGGTATGCCATGCCTTTCATTTTATGTGCAACAATCTGCTGCTGTCTTCCCTGTATAATATCAGTTCTTGGGTTTCGAGAAGATCTGACACAGGCTCGAGGAGCAACAACTGAATCAATTAATGCTCTCCCAACATACAAATTCAAGATGAAGAAAAACAGAAATGGTGATAGCAATGAAGGTGTTGTGGCTGCAGGAACTGAGAAGGAGCGAGTGATTTCTGGAGAGGATGCGGTTTGTTGCATCTGCTTGGCAAAATATGCAAACAATGACGAGCTGAGAGAGTTGCCATGTTCTCATTTTTTCCACAAGGAGTGTGTGGATAAGTGGTTGAAGATCAATGCGTCTTGTCCTCTATGCAAGAGTGAGGTTGGTGAGAGCCTTTTAGGTTCTCTCTCCTCGCTCAATGGCAGTCAGCAACGGAGTGATAGTAGGGTTGGCAATGAAGTGGCTGAGGTCAACACCGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

431

Amino Acids

47.43

Weight (kDa)

8.11

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	353 - 394	1.4e-14	Ring finger domain
zf-RING_11	PF17123	353 - 380	1e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	353 - 393	6e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	353 - 393	8.5e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	355 - 394	1.5e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32600 AT4G32600
fragaria_vesca	FvH4_2g30130 FvH4_2g30130 FvH4_2g30130
malus_domestica	MD15G1115700.v1.1
prunus_persica	Prupe.1G467000_v2.0.a1 Prupe.1G467000_v2.0.a1 Prupe.1G467000_v2.0.a1
pyrus_communis	pycom15g10430
rosa_chinensis	RchiOBHm_Chr6g0312801
rosa_laevigata	RLG00000010297
rosa_multiflora	Rmu_sc0008049.1_g000004
rosa_roxburghii	Rroxscaffold_7G00156480
rosa_rugosa	Rorug06G0399700 Rorug06G0399800
rosa_samantha	Rh6AG516800 Rh6BG528200 Rh6CG532900 Rh6DG519300
rosa_wichuraiana	Rw6G044890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	306
AccI	GTMKAC	1 cut(s)	298
AccII	CGCG	1 cut(s)	213
AciI	CCGC	2 cut(s)	710, 1052
AclWI	GGATC	1 cut(s)	259
AcsI	RAATTY	3 cut(s)	316, 538, 959
AcuI	CTGAAG	3 cut(s)	255, 570, 587
AfaI	GTAC	4 cut(s)	205, 648, 669, 782
AgsI	TTSAA	8 cut(s)	19, 32, 201, 234, 316, 685, 964, 1153
AjnI	CCWGG	1 cut(s)	116
AleI	CACNNNNGTG	1 cut(s)	272
AluBI	AGCT	7 cut(s)	22, 144, 171, 530, 547, 813, 1096
AluI	AGCT	7 cut(s)	22, 144, 171, 530, 547, 813, 1096
Alw26I	GTCTC	2 cut(s)	284, 511
AlwI	GGATC	1 cut(s)	259
AlwNI	CAGNNNCTG	1 cut(s)	1019
Ama87I	CYCGRG	1 cut(s)	915
ApeKI	GCWGC	2 cut(s)	858, 1010
ApoI	RAATTY	3 cut(s)	316, 538, 959
AseI	ATTAAT	1 cut(s)	939
Asp700I	GAANNNNTTC	3 cut(s)	268, 345, 600
AspLEI	GCGC	2 cut(s)	215, 486
AsuHPI	GGTGA	3 cut(s)	367, 998, 1205
AvaI	CYCGRG	1 cut(s)	915
BbsI	GAAGAC	1 cut(s)	857
BbvCI	CCTCAGC	1 cut(s)	1272
BbvI	GCAGC	2 cut(s)	845, 997
BccI	CCATC	2 cut(s)	76, 682
BciT130I	CCWGG	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	284, 511
BfaI	CTAG	3 cut(s)	72, 141, 579
BfmI	CTRYAG	1 cut(s)	1011
BfoI	RGCGCY	1 cut(s)	487
BglII	AGATCT	3 cut(s)	158, 598, 901
BisI	GCNGC	2 cut(s)	859, 1011
BlsI	GCNGC	2 cut(s)	860, 1012
BmcAI	AGTACT	3 cut(s)	205, 648, 669
Bme1390I	CCNGG	1 cut(s)	118
BmeT110I	CYCGRG	1 cut(s)	915
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	6 cut(s)	118, 380, 415, 455, 1039, 1071
BpiI	GAAGAC	1 cut(s)	857
BpmI	CTGGAG	2 cut(s)	244, 1062
Bpu10I	CCTNAGC	1 cut(s)	1272
BpuEI	CTTGAG	2 cut(s)	135, 510
BsaBI	GATNNNNATC	2 cut(s)	335, 405
BsaXI	ACNNNNNCTCC	2 cut(s)	1234, 1264
Bse1I	ACTGG	1 cut(s)	348
Bse3DI	GCAATG	3 cut(s)	736, 1000, 1267
Bse8I	GATNNNNATC	2 cut(s)	335, 405
BseBI	CCWGG	1 cut(s)	118
BseGI	GGATG	4 cut(s)	406, 406, 458, 1054
BseJI	GATNNNNATC	2 cut(s)	335, 405
BseMI	GCAATG	3 cut(s)	736, 1000, 1267
BseMII	CTCAG	5 cut(s)	522, 557, 1011, 1088, 1263
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	4 cut(s)	124, 300, 933, 1207
BseXI	GCAGC	2 cut(s)	845, 997
Bsh1236I	CGCG	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	915
BsmAI	GTCTC	2 cut(s)	284, 511
BsoBI	CYCGRG	1 cut(s)	915
Bsp1407I	TGTACA	1 cut(s)	780
Bsp143I	GATC	5 cut(s)	158, 251, 598, 901, 1155
BspACI	CCGC	2 cut(s)	710, 1052
BspCNI	CTCAG	5 cut(s)	521, 556, 1012, 1089, 1264
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	1 cut(s)	1015
BspPI	GGATC	1 cut(s)	259
BsrDI	GCAATG	3 cut(s)	736, 1000, 1267
BsrGI	TGTACA	1 cut(s)	780
BsrI	ACTGG	1 cut(s)	348
BssMI	GATC	5 cut(s)	158, 251, 598, 901, 1155
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	355, 1285
Bst6I	CTCTTC	3 cut(s)	471, 477, 652
BstAPI	GCANNNNNTGC	1 cut(s)	1079
BstAUI	TGTACA	1 cut(s)	780
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	6 cut(s)	508, 543, 650, 1020, 1097, 1272
BstF5I	GGATG	4 cut(s)	406, 406, 458, 1054
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	2 cut(s)	215, 486
BstKTI	GATC	5 cut(s)	161, 254, 601, 904, 1158
BstMAI	GTCTC	2 cut(s)	284, 511
BstMBI	GATC	5 cut(s)	158, 251, 598, 901, 1155
BstMWI	GCNNNNNNNGC	3 cut(s)	767, 920, 1079
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	1011
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	845, 997
BstV2I	GAAGAC	1 cut(s)	857
BstX2I	RGATCY	3 cut(s)	158, 598, 901
BstYI	RGATCY	3 cut(s)	158, 598, 901
BtgZI	GCGATG	1 cut(s)	479
BtsCI	GGATG	4 cut(s)	406, 406, 458, 1054
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	146
CaiI	CAGNNNCTG	1 cut(s)	1019
CfoI	GCGC	2 cut(s)	215, 486
CseI	GACGC	3 cut(s)	309, 776, 1152
Csp6I	GTAC	4 cut(s)	204, 647, 668, 781
CviAII	CATG	3 cut(s)	429, 829, 1110
CviQI	GTAC	4 cut(s)	204, 647, 668, 781
DdeI	CTNAG	6 cut(s)	508, 543, 650, 1020, 1097, 1272
DpnI	GATC	5 cut(s)	160, 253, 600, 903, 1157
DpnII	GATC	5 cut(s)	158, 251, 598, 901, 1155
DraI	TTTAAA	1 cut(s)	165
DrdI	GACNNNNNNGTC	1 cut(s)	306
DseDI	GACNNNNNNGTC	1 cut(s)	306
Eam1104I	CTCTTC	3 cut(s)	471, 477, 652
EarI	CTCTTC	3 cut(s)	471, 477, 652
Eco32I	GATATC	1 cut(s)	333
Eco57I	CTGAAG	3 cut(s)	255, 570, 587
Eco88I	CYCGRG	1 cut(s)	915
EcoRI	GAATTC	2 cut(s)	316, 538
EcoRII	CCWGG	1 cut(s)	116
EcoRV	GATATC	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	448
FaeI	CATG	3 cut(s)	432, 832, 1113
FatI	CATG	3 cut(s)	428, 828, 1109
FblI	GTMKAC	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	859, 1011
FokI	GGATG	4 cut(s)	393, 413, 465, 1061
Fsp4HI	GCNGC	2 cut(s)	859, 1011
FspBI	CTAG	3 cut(s)	72, 141, 579
GlaI	GCGC	2 cut(s)	214, 485
GluI	GCNGC	2 cut(s)	859, 1011
GsuI	CTGGAG	2 cut(s)	244, 1062
HaeII	RGCGCY	1 cut(s)	487
HgaI	GACGC	3 cut(s)	309, 776, 1152
HhaI	GCGC	2 cut(s)	215, 486
Hin1II	CATG	3 cut(s)	432, 832, 1113
Hin6I	GCGC	2 cut(s)	213, 484
HinP1I	GCGC	2 cut(s)	213, 484
HincII	GTYRAC	2 cut(s)	299, 1279
HindII	GTYRAC	2 cut(s)	299, 1279
HinfI	GANTC	4 cut(s)	292, 518, 660, 932
HphI	GGTGA	3 cut(s)	367, 998, 1205
Hpy166II	GTNNAC	2 cut(s)	299, 1279
Hpy188I	TCNGA	7 cut(s)	39, 511, 537, 589, 606, 804, 906
Hpy188III	TCNNGA	8 cut(s)	72, 152, 261, 450, 685, 896, 964, 1041
Hpy8I	GTNNAC	2 cut(s)	299, 1279
Hpy99I	CGWCG	3 cut(s)	300, 303, 770
HpyAV	CCTTC	5 cut(s)	207, 240, 584, 992, 1018
HpyCH4III	ACNGT	2 cut(s)	355, 1285
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	9 cut(s)	371, 428, 446, 617, 848, 1013, 1062, 1082, 1179
HpyF10VI	GCNNNNNNNGC	3 cut(s)	767, 920, 1079
HpyF3I	CTNAG	6 cut(s)	508, 543, 650, 1020, 1097, 1272
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	3 cut(s)	432, 832, 1113
HspAI	GCGC	2 cut(s)	213, 484
Kzo9I	GATC	5 cut(s)	158, 251, 598, 901, 1155
LmnI	GCTCC	4 cut(s)	64, 775, 920, 1027
Lsp1109I	GCAGC	2 cut(s)	845, 997
LweI	GCATC	6 cut(s)	118, 380, 415, 455, 1039, 1071
MaeI	CTAG	3 cut(s)	72, 141, 579
MaeII	ACGT	1 cut(s)	6
MalI	GATC	5 cut(s)	160, 253, 600, 903, 1157
MboI	GATC	5 cut(s)	158, 251, 598, 901, 1155
MflI	RGATCY	3 cut(s)	158, 598, 901
MluCI	AATT	4 cut(s)	316, 538, 936, 959
MlyI	GAGTC	2 cut(s)	286, 669
Mph1103I	ATGCAT	1 cut(s)	448
MroXI	GAANNNNTTC	3 cut(s)	268, 345, 600
MseI	TTAA	5 cut(s)	59, 87, 164, 173, 939
MslI	CAYNNNNRTG	2 cut(s)	272, 451
MspR9I	CCNGG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	3 cut(s)	767, 920, 1079
NdeII	GATC	5 cut(s)	158, 251, 598, 901, 1155
NlaIII	CATG	3 cut(s)	432, 832, 1113
NlaIV	GGNNCC	1 cut(s)	66
NsiI	ATGCAT	1 cut(s)	448
OliI	CACNNNNGTG	1 cut(s)	272
PaeR7I	CTCGAG	1 cut(s)	915
PdmI	GAANNNNTTC	3 cut(s)	268, 345, 600
PfeI	GAWTC	2 cut(s)	518, 932
PkrI	GCNGC	2 cut(s)	860, 1012
PleI	GAGTC	2 cut(s)	286, 668
PpsI	GAGTC	2 cut(s)	286, 668
PshBI	ATTAAT	1 cut(s)	939
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	915
PstI	CTGCAG	1 cut(s)	1015
PstNI	CAGNNNCTG	1 cut(s)	1019
PsuI	RGATCY	3 cut(s)	158, 598, 901
RsaI	GTAC	4 cut(s)	205, 648, 669, 782
RsaNI	GTAC	4 cut(s)	204, 647, 668, 781
RseI	CAYNNNNRTG	2 cut(s)	272, 451
SalI	GTCGAC	1 cut(s)	297
SaqAI	TTAA	5 cut(s)	59, 87, 164, 173, 939
SatI	GCNGC	2 cut(s)	859, 1011
Sau3AI	GATC	5 cut(s)	158, 251, 598, 901, 1155
ScaI	AGTACT	3 cut(s)	205, 648, 669
SchI	GAGTC	2 cut(s)	286, 669
ScrFI	CCNGG	1 cut(s)	118
SfaNI	GCATC	6 cut(s)	118, 380, 415, 455, 1039, 1071
SfcI	CTRYAG	1 cut(s)	1011
Sfr274I	CTCGAG	1 cut(s)	915
SgrDI	CGTCGACG	1 cut(s)	297
SlaI	CTCGAG	1 cut(s)	915
SmiMI	CAYNNNNRTG	2 cut(s)	272, 451
SmlI	CTYRAG	3 cut(s)	150, 525, 915
SmoI	CTYRAG	3 cut(s)	150, 525, 915
Sse9I	AATT	4 cut(s)	316, 538, 936, 959
SsiI	CCGC	2 cut(s)	710, 1052
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	3 cut(s)	72, 141, 579
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	355, 1285
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	5 cut(s)	254, 298, 339, 895, 916
TasI	AATT	4 cut(s)	316, 538, 936, 959
TatI	WGTACW	4 cut(s)	203, 646, 667, 780
TfiI	GAWTC	2 cut(s)	518, 932
Tru1I	TTAA	5 cut(s)	59, 87, 164, 173, 939
Tru9I	TTAA	5 cut(s)	59, 87, 164, 173, 939
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	2 cut(s)	858, 1010
TspDTI	ATGAA	4 cut(s)	826, 983, 1011, 1278
TspGWI	ACGGA	2 cut(s)	300, 1255
TspRI	CASTG	1 cut(s)	279
VspI	ATTAAT	1 cut(s)	939
XapI	RAATTY	3 cut(s)	316, 538, 959
XbaI	TCTAGA	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	426
XhoI	CTCGAG	1 cut(s)	915
XmiI	GTMKAC	1 cut(s)	298
XmnI	GAANNNNTTC	3 cut(s)	268, 345, 600
XspI	CTAG	3 cut(s)	72, 141, 579
ZrmI	AGTACT	3 cut(s)	205, 648, 669
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.