Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009835

Physical Location & Seq

Genomic Coordinates Reverse (-)

38918861 .. 38923760

Gene Structure 4900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G467000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGATGTTGCGTCATTGAAGCTTCCACTTGAAAGTCAAACATACACTTCCTCATTGTTAATGGAGCAATCACGACCTGAGGATATGAACGGAAGTGAGCATATTATTGACATAACTGGGAGTAGTGATGCCTCCTCATCTAGCTTGCCACATGGTAGATCTTTAAATAGCTTAAATGCATCACAGCAAGAAGACAGACCTTCAACTAGTCCAAGAGCATCCACATTTCAACCTTCAATTTTTTCCTCTAATGGATCAAACTCTAGGAACAGTGCAACAGGAAGGAGAGGGGATACTCGTCGCCGCAGAAGTCCGTTGAATTCTGGATTATGGATATCTATTGAACTGGTTCTTACTGTGAGCCAAATTGTTGCATCTGTTGTTGTTTTGTCTTTGTCAAGGCATGAGCATCCTCGCACTCCATTGTTTGCATGGATTGTTGGTTATGCATCTGGATGTGTTGCTATTCTTCCTCTTCTATATTGGCGCTATCGTCACCGCAACCAGGTTTCAGAACAAGATTCTGCTCAAGCCCGTCACAGTTCTCAGATTAATGTACCAGCAAGACCATTTTCTCTTTCTGTTTCTAGGACTTCTGAAGGAGATCTTCAGACTACCACTGCATCTTCTAGAAGCAGTCAAAGTTCGGAAGTACTAAGCCGAAGAGTCAAGGTACTTGTGGAATACTTTAAGATGGCATTGGATTGTTTCTTTGCGGTTTGGTTCGTAGTTGGCAATGTTTGGATTTTTGGTGGGCACTCATCTGCCAGTGAGGCTCCTAACCTATACAGGTTATGTATAGTATTTCTTACATTTAGTTGTATTGGATACGCCATGCCTTTCATTTTGTGCGCAACAATCTGCTGTTGTCTTCCTTGTATAATATCTGTCCTTGGATTTCGAGAAGACCTGACACAGGCACGAGGAGCCACACCTGAATCAATTAATGCTCTGCCAACATACAAGTTCAAATTAAAGAAAAACAAAAATAGTGACAATAGAGATAGCAGCAGCGCAGGTGTCTCTGAAGGTGGTGTTGTGGCTGCAGGAACTGAGAAGGAGCGTGTGATCTCTGGAGAGGATGCGGTTTGTTGCATCTGCTTGGCAAAATACGCAAACAATGATGAGCTGAGAGAGTTGCCATGTTCTCATTTTTTCCACAAGGAGTGCGTGGATAAGTGGTTGAAGATCAATGCATCTTGTCCCCTTTGCAAGAGCGAGGTTGGTGAGAGCATTTTGGGCTCTCTCTCTGCGATCAGTGGCACTCAGCAACGCGGTGATAGTAGGGTGGGCAATGAAGTGGCCAACACTATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

440

Amino Acids

47.96

Weight (kDa)

8.3

Isoelectric Point (pI)

58.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32600 AT4G32600
fragaria_vesca	FvH4_2g30130 FvH4_2g30130 FvH4_2g30130
malus_domestica	MD15G1115700.v1.1
prunus_persica	Prupe.1G467000_v2.0.a1 Prupe.1G467000_v2.0.a1 Prupe.1G467000_v2.0.a1
pyrus_communis	pycom15g10430
rosa_chinensis	RchiOBHm_Chr6g0312801
rosa_laevigata	RLG00000010297
rosa_multiflora	Rmu_sc0008049.1_g000004
rosa_roxburghii	Rroxscaffold_7G00156480
rosa_rugosa	Rorug06G0399700 Rorug06G0399800
rosa_samantha	Rh6AG516800 Rh6BG528200 Rh6CG532900 Rh6DG519300
rosa_wichuraiana	Rw6G044890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1007
Acc16I	TGCGCA	1 cut(s)	853
Acc36I	ACCTGC	1 cut(s)	1007
AccII	CGCG	1 cut(s)	1275
AciI	CCGC	5 cut(s)	304, 499, 716, 1085, 1275
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	1302
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	3 cut(s)	593, 618, 1047
AfaI	GTAC	3 cut(s)	558, 654, 675
AfiI	CCNNNNNNNGG	2 cut(s)	505, 916
AgsI	TTSAA	9 cut(s)	19, 32, 204, 230, 237, 319, 344, 970, 1186
AhlI	ACTAGT	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	4 cut(s)	22, 144, 171, 1129
AluI	AGCT	4 cut(s)	22, 144, 171, 1129
Alw26I	GTCTC	1 cut(s)	1027
AlwI	GGATC	1 cut(s)	262
AlwNI	CAGNNNCTG	1 cut(s)	1052
AoxI	GGCC	1 cut(s)	1302
ApeKI	GCWGC	3 cut(s)	1008, 1011, 1043
ApoI	RAATTY	1 cut(s)	319
AseI	ATTAAT	2 cut(s)	552, 945
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	3 cut(s)	489, 854, 1016
AsuHPI	GGTGA	3 cut(s)	488, 1238, 1289
AxyI	CCTNAGG	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	759
BalI	TGGCCA	1 cut(s)	1304
BanII	GRGCYC	1 cut(s)	1244
BauI	CACGAG	1 cut(s)	921
BbsI	GAAGAC	3 cut(s)	198, 863, 912
BbvI	GCAGC	3 cut(s)	1020, 1023, 1030
BccI	CCATC	1 cut(s)	688
BciT130I	CCWGG	1 cut(s)	506
BciVI	GTATCC	2 cut(s)	286, 821
BcoDI	GTCTC	1 cut(s)	1027
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	5 cut(s)	141, 207, 264, 588, 630
BfmI	CTRYAG	1 cut(s)	1044
BfoI	RGCGCY	1 cut(s)	490
BfuAI	ACCTGC	1 cut(s)	1007
BfuI	GTATCC	2 cut(s)	286, 821
BglI	GCCNNNNNGGC	1 cut(s)	773
BglII	AGATCT	2 cut(s)	158, 604
BisI	GCNGC	4 cut(s)	304, 1009, 1012, 1044
BlsI	GCNGC	4 cut(s)	305, 1010, 1013, 1045
BmcAI	AGTACT	1 cut(s)	654
Bme1390I	CCNGG	1 cut(s)	506
BmiI	GGNNCC	2 cut(s)	777, 928
BmrFI	CCNGG	1 cut(s)	506
BmrI	ACTGGG	1 cut(s)	126
BmuI	ACTGGG	1 cut(s)	126
BpiI	GAAGAC	3 cut(s)	198, 863, 912
BpmI	CTGGAG	1 cut(s)	1095
BpuEI	CTTGAG	1 cut(s)	513
BsaJI	CCNNGG	1 cut(s)	892
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 916
Bse1I	ACTGG	3 cut(s)	121, 351, 768
Bse21I	CCTNAGG	1 cut(s)	78
Bse3DI	GCAATG	2 cut(s)	742, 1300
BseBI	CCWGG	1 cut(s)	506
BseDI	CCNNGG	1 cut(s)	892
BseGI	GGATG	5 cut(s)	10, 218, 409, 461, 1087
BseLI	CCNNNNNNNGG	2 cut(s)	505, 916
BseMI	GCAATG	2 cut(s)	742, 1300
BseMII	CTCAG	5 cut(s)	69, 560, 1044, 1121, 1280
BseNI	ACTGG	3 cut(s)	121, 351, 768
BseRI	GAGGAG	2 cut(s)	124, 939
BseSI	GKGCMC	1 cut(s)	759
BseXI	GCAGC	3 cut(s)	1020, 1023, 1030
Bsh1236I	CGCG	1 cut(s)	1275
BshFI	GGCC	1 cut(s)	1304
BslFI	GGGAC	1 cut(s)	1188
BslI	CCNNNNNNNGG	2 cut(s)	505, 916
BsmAI	GTCTC	1 cut(s)	1027
BsmFI	GGGAC	1 cut(s)	1188
BsnI	GGCC	1 cut(s)	1304
Bsp1286I	GDGCHC	2 cut(s)	759, 1244
Bsp143I	GATC	6 cut(s)	158, 254, 604, 1068, 1188, 1254
BspACI	CCGC	5 cut(s)	304, 499, 716, 1085, 1275
BspANI	GGCC	1 cut(s)	1304
BspCNI	CTCAG	5 cut(s)	70, 559, 1045, 1122, 1279
BspFNI	CGCG	1 cut(s)	1275
BspLI	GGNNCC	2 cut(s)	777, 928
BspMAI	CTGCAG	1 cut(s)	1048
BspMI	ACCTGC	1 cut(s)	1007
BspPI	GGATC	1 cut(s)	262
BsrDI	GCAATG	2 cut(s)	742, 1300
BsrI	ACTGG	3 cut(s)	121, 351, 768
BssECI	CCNNGG	1 cut(s)	892
BssMI	GATC	6 cut(s)	158, 254, 604, 1068, 1188, 1254
BssSI	CACGAG	1 cut(s)	921
BssT1I	CCWWGG	1 cut(s)	892
Bst2BI	CACGAG	1 cut(s)	921
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	3 cut(s)	272, 358, 542
Bst6I	CTCTTC	2 cut(s)	480, 658
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	6 cut(s)	78, 546, 656, 1053, 1130, 1266
BstENI	CCTNNNNNAGG	1 cut(s)	914
BstF5I	GGATG	5 cut(s)	10, 218, 409, 461, 1087
BstFNI	CGCG	1 cut(s)	1275
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	3 cut(s)	489, 854, 1016
BstKTI	GATC	6 cut(s)	161, 257, 607, 1071, 1191, 1257
BstMAI	GTCTC	1 cut(s)	1027
BstMBI	GATC	6 cut(s)	158, 254, 604, 1068, 1188, 1254
BstMWI	GCNNNNNNNGC	4 cut(s)	773, 926, 1112, 1239
BstNI	CCWGG	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	504
BstSFI	CTRYAG	1 cut(s)	1044
BstSLI	GKGCMC	1 cut(s)	759
BstUI	CGCG	1 cut(s)	1275
BstV1I	GCAGC	3 cut(s)	1020, 1023, 1030
BstV2I	GAAGAC	3 cut(s)	198, 863, 912
BstX2I	RGATCY	2 cut(s)	158, 604
BstYI	RGATCY	2 cut(s)	158, 604
Bsu36I	CCTNAGG	1 cut(s)	78
BsuI	GTATCC	2 cut(s)	286, 821
BsuRI	GGCC	1 cut(s)	1304
BtsCI	GGATG	5 cut(s)	10, 218, 409, 461, 1087
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	4 cut(s)	277, 618, 775, 1264
BveI	ACCTGC	1 cut(s)	1007
Cac8I	GCNNGC	1 cut(s)	146
CaiI	CAGNNNCTG	1 cut(s)	1052
CfoI	GCGC	3 cut(s)	489, 854, 1016
CsiI	ACCWGGT	1 cut(s)	504
Csp6I	GTAC	3 cut(s)	557, 653, 674
CviAII	CATG	5 cut(s)	152, 404, 432, 835, 1143
CviQI	GTAC	3 cut(s)	557, 653, 674
DdeI	CTNAG	6 cut(s)	78, 546, 656, 1053, 1130, 1266
DpnI	GATC	6 cut(s)	160, 256, 606, 1070, 1190, 1256
DpnII	GATC	6 cut(s)	158, 254, 604, 1068, 1188, 1254
DraI	TTTAAA	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	1302
Eam1104I	CTCTTC	2 cut(s)	480, 658
EarI	CTCTTC	2 cut(s)	480, 658
Eco130I	CCWWGG	1 cut(s)	892
Eco24I	GRGCYC	1 cut(s)	1244
Eco32I	GATATC	1 cut(s)	336
Eco57I	CTGAAG	3 cut(s)	593, 618, 1047
Eco81I	CCTNAGG	1 cut(s)	78
EcoNI	CCTNNNNNAGG	1 cut(s)	914
EcoRI	GAATTC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	504
EcoRV	GATATC	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	892
EcoT22I	ATGCAT	3 cut(s)	181, 451, 1198
EcoT38I	GRGCYC	1 cut(s)	1244
ErhI	CCWWGG	1 cut(s)	892
FaeI	CATG	5 cut(s)	155, 407, 435, 838, 1146
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FaqI	GGGAC	1 cut(s)	1188
FatI	CATG	5 cut(s)	151, 403, 431, 834, 1142
Fnu4HI	GCNGC	4 cut(s)	304, 1009, 1012, 1044
FokI	GGATG	5 cut(s)	17, 205, 396, 468, 1094
FriOI	GRGCYC	1 cut(s)	1244
Fsp4HI	GCNGC	4 cut(s)	304, 1009, 1012, 1044
FspBI	CTAG	5 cut(s)	141, 207, 264, 588, 630
FspI	TGCGCA	1 cut(s)	853
GlaI	GCGC	3 cut(s)	488, 853, 1015
GluI	GCNGC	4 cut(s)	304, 1009, 1012, 1044
GsuI	CTGGAG	1 cut(s)	1095
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	1 cut(s)	1304
HhaI	GCGC	3 cut(s)	489, 854, 1016
Hin1II	CATG	5 cut(s)	155, 407, 435, 838, 1146
Hin6I	GCGC	3 cut(s)	487, 852, 1014
HinP1I	GCGC	3 cut(s)	487, 852, 1014
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	3 cut(s)	521, 666, 938
HphI	GGTGA	3 cut(s)	488, 1238, 1289
Hpy188I	TCNGA	6 cut(s)	514, 549, 598, 612, 649, 1027
Hpy188III	TCNNGA	6 cut(s)	72, 324, 453, 630, 902, 1074
Hpy99I	CGWCG	1 cut(s)	303
HpyAV	CCTTC	6 cut(s)	210, 243, 276, 593, 1022, 1051
HpyCH4III	ACNGT	3 cut(s)	272, 358, 542
HpyF10VI	GCNNNNNNNGC	4 cut(s)	773, 926, 1112, 1239
HpyF3I	CTNAG	6 cut(s)	78, 546, 656, 1053, 1130, 1266
Hsp92II	CATG	5 cut(s)	155, 407, 435, 838, 1146
HspAI	GCGC	3 cut(s)	487, 852, 1014
Kzo9I	GATC	6 cut(s)	158, 254, 604, 1068, 1188, 1254
LmnI	GCTCC	4 cut(s)	64, 781, 926, 1060
Lsp1109I	GCAGC	3 cut(s)	1020, 1023, 1030
MabI	ACCWGGT	1 cut(s)	504
MaeI	CTAG	5 cut(s)	141, 207, 264, 588, 630
MaeIII	GTNAC	3 cut(s)	494, 536, 992
MalI	GATC	6 cut(s)	160, 256, 606, 1070, 1190, 1256
MboI	GATC	6 cut(s)	158, 254, 604, 1068, 1188, 1254
MboII	GAAGA	9 cut(s)	203, 461, 467, 599, 618, 675, 863, 917, 1198
MflI	RGATCY	2 cut(s)	158, 604
MhlI	GDGCHC	2 cut(s)	759, 1244
MlsI	TGGCCA	1 cut(s)	1304
MluCI	AATT	5 cut(s)	237, 319, 366, 942, 971
MluNI	TGGCCA	1 cut(s)	1304
MlyI	GAGTC	1 cut(s)	675
Mox20I	TGGCCA	1 cut(s)	1304
Mph1103I	ATGCAT	3 cut(s)	181, 451, 1198
MroXI	GAANNNNTTC	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	1304
MseI	TTAA	7 cut(s)	59, 164, 173, 552, 690, 945, 974
MslI	CAYNNNNRTG	1 cut(s)	454
Msp20I	TGGCCA	1 cut(s)	1304
MspR9I	CCNGG	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	506
MvnI	CGCG	1 cut(s)	1275
MwoI	GCNNNNNNNGC	4 cut(s)	773, 926, 1112, 1239
NdeII	GATC	6 cut(s)	158, 254, 604, 1068, 1188, 1254
NlaIII	CATG	5 cut(s)	155, 407, 435, 838, 1146
NlaIV	GGNNCC	2 cut(s)	777, 928
NmuCI	GTSAC	3 cut(s)	494, 536, 992
NsbI	TGCGCA	1 cut(s)	853
NsiI	ATGCAT	3 cut(s)	181, 451, 1198
PaqCI	CACCTGC	1 cut(s)	1007
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	521, 938
PkrI	GCNGC	4 cut(s)	305, 1010, 1013, 1045
PleI	GAGTC	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	674
PshBI	ATTAAT	2 cut(s)	552, 945
Psp6I	CCWGG	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	2 cut(s)	777, 928
PstI	CTGCAG	1 cut(s)	1048
PstNI	CAGNNNCTG	1 cut(s)	1052
PsuI	RGATCY	2 cut(s)	158, 604
RsaI	GTAC	3 cut(s)	558, 654, 675
RsaNI	GTAC	3 cut(s)	557, 653, 674
RseI	CAYNNNNRTG	1 cut(s)	454
SaqAI	TTAA	7 cut(s)	59, 164, 173, 552, 690, 945, 974
SatI	GCNGC	4 cut(s)	304, 1009, 1012, 1044
Sau3AI	GATC	6 cut(s)	158, 254, 604, 1068, 1188, 1254
ScaI	AGTACT	1 cut(s)	654
SchI	GAGTC	1 cut(s)	675
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	2 cut(s)	759, 1244
SexAI	ACCWGGT	1 cut(s)	504
SfcI	CTRYAG	1 cut(s)	1044
SmiMI	CAYNNNNRTG	1 cut(s)	454
SmlI	CTYRAG	1 cut(s)	528
SmoI	CTYRAG	1 cut(s)	528
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	5 cut(s)	237, 319, 366, 942, 971
SsiI	CCGC	5 cut(s)	304, 499, 716, 1085, 1275
SspMI	CTAG	5 cut(s)	141, 207, 264, 588, 630
StyD4I	CCNGG	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	892
TaaI	ACNGT	3 cut(s)	272, 358, 542
TaqI	TCGA	1 cut(s)	901
TasI	AATT	5 cut(s)	237, 319, 366, 942, 971
TatI	WGTACW	1 cut(s)	652
TauI	GCSGC	1 cut(s)	306
TfiI	GAWTC	2 cut(s)	521, 938
Tru1I	TTAA	7 cut(s)	59, 164, 173, 552, 690, 945, 974
Tru9I	TTAA	7 cut(s)	59, 164, 173, 552, 690, 945, 974
TscAI	CASTG	4 cut(s)	277, 625, 775, 1264
TseFI	GTSAC	3 cut(s)	494, 536, 992
TseI	GCWGC	3 cut(s)	1008, 1011, 1043
Tsp45I	GTSAC	3 cut(s)	494, 536, 992
TspDTI	ATGAA	3 cut(s)	101, 832, 1311
TspGWI	ACGGA	2 cut(s)	105, 303
TspRI	CASTG	4 cut(s)	277, 625, 775, 1264
VspI	ATTAAT	2 cut(s)	552, 945
XagI	CCTNNNNNAGG	1 cut(s)	914
XapI	RAATTY	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	429
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	5 cut(s)	141, 207, 264, 588, 630
ZrmI	AGTACT	1 cut(s)	654
Zsp2I	ATGCAT	3 cut(s)	181, 451, 1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.