AT4G33120

rRNA small subunit methyltransferase G

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010879
Physical Location & Seq
Reverse (-)
15975343 .. 15978136
2794 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33120.1

Sequence Viewer

Length: 1068 bp
ATGGAGAAGATTATTGACGTAGCTTATGGTGCATCAGTGAAGGCGGGTTTGACGTTGTTGGAGAAGAATCTGTTGCCGGATCTTGTCATTAGGCGGCTCATACGTCTGCTTTTGGCCAGTCGTCTCCGTTCCGTTTACAAACCCACGGCGGAGATGCAACTCTCCGATCTCCTCCGTTTTGTTGACTCTCTAAAGAAGATGCCTATAGCTATCAATACCGAGACGGCAAAGACTCAACACTATGAATTACCAACAGCTTTCTTCGAACATGCTCTTGGAAGAAACATCAAATACAGCTGTTGTTACTATTCAAACGATTCAAGTAGCTTAGAAGAGGCAGGGGAAGCTATGTTGGCTCTTTCTTGTGAAAGAGCTAAAGTGGAAGATGGTCAAAGTGTTCTTGATATCGGATGTGGCTGGGGATCTTTGACTTTGTACATTGCACGCAAGTACAGCAAATGCAAGTTAACCGGTATCTGCAACTCCAAAACGCAGAAAGCATTTATCGATGAGAAATGCCGGAAACTCGGGCTTCAGAATGTCGAAATCATTGCTGCGGATATTAGCACTTTTGAGCATGAAGGGACATACGATCGGATATTCTCCATCGAAATGTTCGAGCATATGAAAAACTATGGAGAGCTACTGAAGAAGATAGGAAACTGGATGAAGGAAGATAGTCTTCTGTTTGTTCACTATCTCTGCCATAAGACATATGCTTACCACTTTGAGGATGTGAATGACGATGACTGGATCACAAGACACTTCTTCAGCGGAGGAACAATGCCATCAGCAGATCTTCTCCTATATTTCCAAGAAAATGTTTCGATTATGGATCATTGGCTCGTTAACGGGACGCATTATGCAAAGACAAGTGAAGAGTGGCTGAAAGGAATGGATAAGGAGATAGTTGCCGTAAAAGAGATAATGGAAGTGACTTATGGGAAAGAAGAAGCAGTGAAGTGGACGGTTTACTGGAGAACCTTCTTCATCGCGCTTGCTGAGCTTTTCGCATACAACAATGGAGACGAGTGGATGATTGCACACTTCCTCTTCAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CMAS

Protein Analysis

355

Amino Acids

41.0

Weight (kDa)

6.03

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 75 - 327 3.9e-42 Mycolic acid cyclopropane synthetase
Methyltransf_23 PF13489 127 - 237 7.7e-13 Methyltransferase domain
GidB PF02527 128 - 223 1.1e-06 rRNA small subunit methyltransferase G
MTS PF05175 128 - 201 4.8e-06 Methyltransferase small domain
Methyltransf_31 PF13847 129 - 238 6.4e-13 Methyltransferase domain
Methyltransf_25 PF13649 133 - 225 6.6e-14 Methyltransferase domain
Methyltransf_11 PF08241 134 - 230 1.7e-11 Methyltransferase domain
Methyltransf_12 PF08242 134 - 227 4.8e-09 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33110 AT4G33110 AT4G33120
fragaria_vesca FvH4_2g31420
malus_domestica MD15G1054300.v1.1
prunus_persica Prupe.1G407700_v2.0.a1
pyrus_communis pycom15g05110
rosa_chinensis RchiOBHm_Chr6g0311401
rosa_laevigata RLG00000010410
rosa_multiflora Rmu_sc0006915.1_g000006
rosa_roxburghii Rroxscaffold_7G00157650
rosa_rugosa Rorug06G0388500 Rorug06G0388600.1
rosa_samantha Rh6AG503000 Rh6BG513500 Rh6CG519400 Rh6DG505600
rosa_wichuraiana Rw6G043800 Rw7G029480 Rw7G029820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 995
AciI CCGC 5 cut(s) 44, 94, 149, 557, 774
AclWI GGATC 4 cut(s) 87, 430, 761, 843
AcoI YGGCCR 1 cut(s) 114
AcuI CTGAAG 3 cut(s) 518, 668, 754
AfaI GTAC 2 cut(s) 437, 452
AfiI CCNNNNNNNGG 1 cut(s) 730
AgeI ACCGGT 1 cut(s) 470
AgsI TTSAA 3 cut(s) 312, 321, 1057
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AluBI AGCT 9 cut(s) 23, 209, 257, 297, 327, 347, 374, 643, 1006
AluI AGCT 9 cut(s) 23, 209, 257, 297, 327, 347, 374, 643, 1006
Alw26I GTCTC 3 cut(s) 128, 215, 1020
AlwI GGATC 4 cut(s) 87, 430, 761, 843
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 554
AsiGI ACCGGT 1 cut(s) 470
AspLEI GCGC 1 cut(s) 997
AsuII TTCGAA 1 cut(s) 264
AvaI CYCGRG 1 cut(s) 527
BalI TGGCCA 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 674
BbvI GCAGC 1 cut(s) 541
BccI CCATC 3 cut(s) 380, 614, 796
BceAI ACGGC 3 cut(s) 162, 240, 899
BcgI CGANNNNNNTGC 2 cut(s) 533, 567
BcoDI GTCTC 3 cut(s) 128, 215, 1020
BfmI CTRYAG 1 cut(s) 204
BglII AGATCT 1 cut(s) 796
BisI GCNGC 2 cut(s) 95, 555
BlpI GCTNAGC 1 cut(s) 1002
BlsI GCNGC 2 cut(s) 96, 556
BmeT110I CYCGRG 1 cut(s) 527
BmsI GCATC 3 cut(s) 41, 144, 189
BpiI GAAGAC 1 cut(s) 674
BpmI CTGGAG 1 cut(s) 997
Bpu1102I GCTNAGC 1 cut(s) 1002
Bpu14I TTCGAA 1 cut(s) 264
Bsa29I ATCGAT 1 cut(s) 507
BsaJI CCNNGG 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 470
Bsc4I CCNNNNNNNGG 1 cut(s) 730
Bse118I RCCGGY 1 cut(s) 470
Bse1I ACTGG 4 cut(s) 117, 668, 755, 980
Bse3DI GCAATG 2 cut(s) 438, 549
BseCI ATCGAT 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 4 cut(s) 416, 672, 739, 1041
BseLI CCNNNNNNNGG 1 cut(s) 730
BseMI GCAATG 2 cut(s) 438, 549
BseMII CTCAG 1 cut(s) 993
BseNI ACTGG 4 cut(s) 117, 668, 755, 980
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 541
BseYI CCCAGC 1 cut(s) 417
Bsh1236I CGCG 1 cut(s) 995
Bsh1285I CGRYCG 1 cut(s) 595
BshFI GGCC 1 cut(s) 116
BshTI ACCGGT 1 cut(s) 470
BshVI ATCGAT 1 cut(s) 507
BsiEI CGRYCG 1 cut(s) 595
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 3 cut(s) 77, 471, 520
BslFI GGGAC 2 cut(s) 598, 868
BslI CCNNNNNNNGG 1 cut(s) 730
BsmAI GTCTC 3 cut(s) 128, 215, 1020
BsmBI CGTCTC 3 cut(s) 128, 215, 1020
BsmFI GGGAC 2 cut(s) 598, 868
BsnI GGCC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 527
Bsp119I TTCGAA 1 cut(s) 264
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 7 cut(s) 79, 166, 422, 592, 753, 796, 835
Bsp1720I GCTNAGC 1 cut(s) 1002
BspACI CCGC 5 cut(s) 44, 94, 149, 557, 774
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 994
BspDI ATCGAT 1 cut(s) 507
BspFNI CGCG 1 cut(s) 995
BspPI GGATC 4 cut(s) 87, 430, 761, 843
BspT104I TTCGAA 1 cut(s) 264
BsrDI GCAATG 2 cut(s) 438, 549
BsrFI RCCGGY 1 cut(s) 470
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 4 cut(s) 117, 668, 755, 980
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 7 cut(s) 79, 166, 422, 592, 753, 796, 835
Bst4CI ACNGT 1 cut(s) 970
Bst6I CTCTTC 3 cut(s) 327, 873, 1058
BstAUI TGTACA 1 cut(s) 435
BstBI TTCGAA 1 cut(s) 264
BstC8I GCNNGC 2 cut(s) 445, 999
BstDEI CTNAG 2 cut(s) 328, 1002
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 4 cut(s) 416, 672, 739, 1041
BstFNI CGCG 1 cut(s) 995
BstHHI GCGC 1 cut(s) 997
BstKTI GATC 7 cut(s) 82, 169, 425, 595, 756, 799, 838
BstMAI GTCTC 3 cut(s) 128, 215, 1020
BstMBI GATC 7 cut(s) 79, 166, 422, 592, 753, 796, 835
BstMCI CGRYCG 1 cut(s) 595
BstMWI GCNNNNNNNGC 5 cut(s) 29, 344, 353, 453, 1003
BstNSI RCATGY 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 204
BstUI CGCG 1 cut(s) 995
BstV1I GCAGC 1 cut(s) 541
BstV2I GAAGAC 1 cut(s) 674
BstX2I RGATCY 3 cut(s) 79, 422, 796
BstYI RGATCY 3 cut(s) 79, 422, 796
Bsu15I ATCGAT 1 cut(s) 507
BsuRI GGCC 1 cut(s) 116
BsuTUI ATCGAT 1 cut(s) 507
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 976
BtsCI GGATG 4 cut(s) 416, 672, 739, 1041
BtsI GCAGTG 1 cut(s) 963
BtsIMutI CAGTG 2 cut(s) 42, 963
Cac8I GCNNGC 2 cut(s) 445, 999
CfoI GCGC 1 cut(s) 997
Cfr10I RCCGGY 1 cut(s) 470
ClaI ATCGAT 1 cut(s) 507
CseI GACGC 1 cut(s) 865
Csp6I GTAC 2 cut(s) 436, 451
CspAI ACCGGT 1 cut(s) 470
CviAII CATG 2 cut(s) 269, 578
CviQI GTAC 2 cut(s) 436, 451
DdeI CTNAG 2 cut(s) 328, 1002
DpnI GATC 7 cut(s) 81, 168, 424, 594, 755, 798, 837
DpnII GATC 7 cut(s) 79, 166, 422, 592, 753, 796, 835
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 3 cut(s) 327, 873, 1058
EarI CTCTTC 3 cut(s) 327, 873, 1058
EciI GGCGGA 1 cut(s) 164
Eco32I GATATC 1 cut(s) 406
Eco57I CTGAAG 3 cut(s) 518, 668, 754
Eco88I CYCGRG 1 cut(s) 527
EcoRV GATATC 1 cut(s) 406
Esp3I CGTCTC 3 cut(s) 128, 215, 1020
FaeI CATG 2 cut(s) 272, 581
FalI AAGNNNNNCTT 2 cut(s) 666, 698
FaqI GGGAC 2 cut(s) 598, 868
FatI CATG 2 cut(s) 268, 577
FauI CCCGC 1 cut(s) 37
FauNDI CATATG 2 cut(s) 624, 715
Fnu4HI GCNGC 2 cut(s) 95, 555
FokI GGATG 4 cut(s) 423, 679, 746, 1048
Fsp4HI GCNGC 2 cut(s) 95, 555
GlaI GCGC 1 cut(s) 996
GluI GCNGC 2 cut(s) 95, 555
GsaI CCCAGC 1 cut(s) 421
GsuI CTGGAG 1 cut(s) 997
HaeIII GGCC 1 cut(s) 116
HapII CCGG 3 cut(s) 77, 471, 520
HgaI GACGC 1 cut(s) 865
HhaI GCGC 1 cut(s) 997
Hin1II CATG 2 cut(s) 272, 581
Hin6I GCGC 1 cut(s) 995
HinP1I GCGC 1 cut(s) 995
HincII GTYRAC 3 cut(s) 184, 468, 850
HindII GTYRAC 3 cut(s) 184, 468, 850
HinfI GANTC 4 cut(s) 67, 185, 232, 317
HpaI GTTAAC 2 cut(s) 468, 850
HpaII CCGG 3 cut(s) 77, 471, 520
Hpy166II GTNNAC 7 cut(s) 136, 184, 468, 694, 850, 966, 973
Hpy188I TCNGA 4 cut(s) 166, 410, 537, 597
Hpy188III TCNNGA 2 cut(s) 401, 1057
Hpy8I GTNNAC 7 cut(s) 136, 184, 468, 694, 850, 966, 973
HpyAV CCTTC 4 cut(s) 34, 575, 664, 994
HpyCH4III ACNGT 1 cut(s) 970
HpyCH4IV ACGT 3 cut(s) 18, 53, 103
HpyCH4V TGCA 7 cut(s) 32, 157, 443, 462, 480, 866, 1043
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 344, 353, 453, 1003
HpyF3I CTNAG 2 cut(s) 328, 1002
HpySE526I ACGT 3 cut(s) 18, 53, 103
Hsp92II CATG 2 cut(s) 272, 581
HspAI GCGC 1 cut(s) 995
KspAI GTTAAC 2 cut(s) 468, 850
Kzo9I GATC 7 cut(s) 79, 166, 422, 592, 753, 796, 835
LpnPI CCDG 9 cut(s) 90, 130, 324, 403, 484, 533, 649, 736, 961
Lsp1109I GCAGC 1 cut(s) 541
LweI GCATC 3 cut(s) 41, 144, 189
MaeII ACGT 3 cut(s) 18, 53, 103
MaeIII GTNAC 2 cut(s) 302, 934
MalI GATC 7 cut(s) 81, 168, 424, 594, 755, 798, 837
MboI GATC 7 cut(s) 79, 166, 422, 592, 753, 796, 835
MflI RGATCY 3 cut(s) 79, 422, 796
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 1 cut(s) 245
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 2 cut(s) 179, 226
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 5 cut(s) 182, 328, 724, 770, 1061
Mox20I TGGCCA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 116
MseI TTAA 2 cut(s) 467, 849
MslI CAYNNNNRTG 1 cut(s) 611
Msp20I TGGCCA 1 cut(s) 116
MspA1I CMGCKG 2 cut(s) 297, 774
MspI CCGG 3 cut(s) 77, 471, 520
MvnI CGCG 1 cut(s) 995
MwoI GCNNNNNNNGC 5 cut(s) 29, 344, 353, 453, 1003
NdeI CATATG 2 cut(s) 624, 715
NdeII GATC 7 cut(s) 79, 166, 422, 592, 753, 796, 835
NlaIII CATG 2 cut(s) 272, 581
NmuCI GTSAC 1 cut(s) 934
NspI RCATGY 1 cut(s) 272
NspV TTCGAA 1 cut(s) 264
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PfeI GAWTC 2 cut(s) 67, 317
PinAI ACCGGT 1 cut(s) 470
PkrI GCNGC 2 cut(s) 96, 556
Ple19I CGATCG 1 cut(s) 595
PleI GAGTC 2 cut(s) 179, 226
PpsI GAGTC 2 cut(s) 179, 226
PspFI CCCAGC 1 cut(s) 417
PsuI RGATCY 3 cut(s) 79, 422, 796
PvuI CGATCG 1 cut(s) 595
PvuII CAGCTG 1 cut(s) 297
RsaI GTAC 2 cut(s) 437, 452
RsaNI GTAC 2 cut(s) 436, 451
RseI CAYNNNNRTG 1 cut(s) 611
SaqAI TTAA 2 cut(s) 467, 849
SatI GCNGC 2 cut(s) 95, 555
Sau3AI GATC 7 cut(s) 79, 166, 422, 592, 753, 796, 835
SchI GAGTC 2 cut(s) 179, 226
SfaNI GCATC 3 cut(s) 41, 144, 189
SfcI CTRYAG 1 cut(s) 204
SfuI TTCGAA 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 611
Sse9I AATT 1 cut(s) 245
SsiI CCGC 5 cut(s) 44, 94, 149, 557, 774
TaaI ACNGT 1 cut(s) 970
TaiI ACGT 3 cut(s) 21, 56, 106
TaqI TCGA 6 cut(s) 264, 507, 543, 609, 618, 827
TasI AATT 1 cut(s) 245
TatI WGTACW 2 cut(s) 435, 450
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 2 cut(s) 67, 317
Tru1I TTAA 2 cut(s) 467, 849
Tru9I TTAA 2 cut(s) 467, 849
TscAI CASTG 2 cut(s) 42, 963
TseFI GTSAC 1 cut(s) 934
TseI GCWGC 1 cut(s) 554
Tsp45I GTSAC 1 cut(s) 934
TspDTI ATGAA 5 cut(s) 258, 594, 641, 683, 979
TspGWI ACGGA 3 cut(s) 116, 121, 164
TspRI CASTG 2 cut(s) 42, 963
XceI RCATGY 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.