Rh6AG503000

(S)-coclaurine N-methyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010879
Physical Location & Seq
Reverse (-)
67627634 .. 67629582
1949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG503000.1

Sequence Viewer

Length: 927 bp
ATGGAAGCAATAGAGTCTTACGTTCTGCTATTCACTTCATTTTCAGCTCTAAAAGAGATGCCTATAGCTATCAAGACTGATGACGCTAAAGCTCAACACTATGAAGTACCCACTTCTTTCTTCAAGATGGTGCTCGGGAACAATCTCAAATATAGTTGCTGTTACTTCACTGATAAGTCAAGCAGCTTGGAGGATGCGGAGAAAGCCATGTTGGAGATGTACTGTGAAAGATCCCAGATTAAAGATGGCCATACTGTTCTTGATGTTGGATGTGGATGGGGATCACTGTCTCTGTACATTGCACAGAAATATAAGAACTGCAGGGTTACTGGGATCTGCAATTCAGCAACACAGAAGGCTTTTATAGAAGAGCAGTGTAGGAATCGTCGGCTGGAGAATGTGGAGATCATTGTTGCAGATATCAGCACATTTGAGATGGAGGCATCATATGACATGATATTTTCCATCGAAATGTTCGAGCACATGAAGAACTACAAAGATCTTCTGAAGAAGATATCCGCGTGGATGAAACAGGACAGCCTTCTATTTGTACATCATTTCTGTCACAAAGCATTTGCTTACCACTTTGAGGACAAAAGTGATGATGACTGGATTACTAGGTATTTCTTCAGTGGAGGTACAATGCCTTCAGCAAATCTACTACTGTATTTCCAGGATGATGTTTCTGTTGTCGATCATTGGCTTGTCAATGGGAAGCATTATGCACAAACAAGTGAAGAATGGCTGAAAAGAATGGACCATAATTCGGCTTCCATAAAACCAATTATGGAGTCAACTTATGGCAAAGATTCGGCTGTGAAGTGGACTGTGTATTGGAGAACTTTCTTCATTGCGGTTGCAGAACTCTTTGGCTACAACAACGGAGAAGAATGGATGGTTGCTCTCTTCCTATTCAAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CMAS

Protein Analysis

308

Amino Acids

35.9

Weight (kDa)

5.72

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 28 - 265 2.8e-44 Mycolic acid cyclopropane synthetase
Methyltransf_31 PF13847 80 - 201 8.9e-16 Methyltransferase domain
Methyltransf_23 PF13489 80 - 188 1.7e-12 Methyltransferase domain
TehB PF03848 80 - 164 3.6e-07 Tellurite resistance protein TehB
MTS PF05175 82 - 155 9.8e-08 Methyltransferase small domain
Methyltransf_25 PF13649 86 - 178 5.5e-16 Methyltransferase domain
Methyltransf_11 PF08241 87 - 183 2.8e-14 Methyltransferase domain
Methyltransf_12 PF08242 87 - 180 2.8e-11 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33110 AT4G33110 AT4G33120
fragaria_vesca FvH4_2g31420
malus_domestica MD15G1054300.v1.1
prunus_persica Prupe.1G407700_v2.0.a1
pyrus_communis pycom15g05110
rosa_chinensis RchiOBHm_Chr6g0311401
rosa_laevigata RLG00000010410
rosa_multiflora Rmu_sc0006915.1_g000006
rosa_roxburghii Rroxscaffold_7G00157650
rosa_rugosa Rorug06G0388500 Rorug06G0388600.1
rosa_samantha Rh6AG503000 Rh6BG513500 Rh6CG519400 Rh6DG505600
rosa_wichuraiana Rw6G043800 Rw7G029480 Rw7G029820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 521
AciI CCGC 3 cut(s) 197, 519, 854
AclWI GGATC 3 cut(s) 225, 289, 341
AcoI YGGCCR 1 cut(s) 247
AcuI CTGAAG 3 cut(s) 527, 613, 633
AfaI GTAC 5 cut(s) 108, 221, 296, 552, 640
AfiI CCNNNNNNNGG 2 cut(s) 589, 766
AgsI TTSAA 2 cut(s) 124, 916
AjnI CCWGG 1 cut(s) 672
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 4 cut(s) 47, 68, 92, 186
AluI AGCT 4 cut(s) 47, 68, 92, 186
Alw21I GWGCWC 2 cut(s) 135, 483
Alw26I GTCTC 1 cut(s) 294
AlwI GGATC 3 cut(s) 225, 289, 341
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 757
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 1 cut(s) 757
BalI TGGCCA 1 cut(s) 249
BarI GAAGNNNNNNTAC 2 cut(s) 631, 663
Bbv12I GWGCWC 2 cut(s) 135, 483
BbvI GCAGC 1 cut(s) 195
BccI CCATC 6 cut(s) 121, 239, 270, 430, 473, 889
BciT130I CCWGG 1 cut(s) 674
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 1 cut(s) 618
BfmI CTRYAG 2 cut(s) 63, 319
BglII AGATCT 1 cut(s) 499
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 674
Bme18I GGWCC 1 cut(s) 757
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 757
BmrFI CCNGG 1 cut(s) 674
BmrI ACTGGG 1 cut(s) 339
BmsI GCATC 3 cut(s) 48, 184, 452
BmuI ACTGGG 1 cut(s) 339
BpmI CTGGAG 1 cut(s) 413
BsaBI GATNNNNATC 1 cut(s) 280
Bsc4I CCNNNNNNNGG 2 cut(s) 589, 766
Bse1I ACTGG 2 cut(s) 334, 614
Bse3DI GCAATG 2 cut(s) 297, 849
Bse8I GATNNNNATC 1 cut(s) 280
BseBI CCWGG 1 cut(s) 674
BseGI GGATG 6 cut(s) 199, 275, 281, 531, 682, 900
BseJI GATNNNNATC 1 cut(s) 280
BseLI CCNNNNNNNGG 2 cut(s) 589, 766
BseMI GCAATG 2 cut(s) 297, 849
BseNI ACTGG 2 cut(s) 334, 614
BseXI GCAGC 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 521
BshFI GGCC 1 cut(s) 249
BsiHKAI GWGCWC 2 cut(s) 135, 483
BsiHKCI CYCGRG 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 589, 766
BsmAI GTCTC 1 cut(s) 294
BsnI GGCC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 2 cut(s) 135, 483
Bsp1407I TGTACA 2 cut(s) 294, 550
Bsp143I GATC 6 cut(s) 230, 281, 333, 405, 499, 694
BspACI CCGC 3 cut(s) 197, 519, 854
BspANI GGCC 1 cut(s) 249
BspFNI CGCG 1 cut(s) 521
BspMAI CTGCAG 1 cut(s) 323
BspPI GGATC 3 cut(s) 225, 289, 341
BspQI GCTCTTC 1 cut(s) 363
BsrDI GCAATG 2 cut(s) 297, 849
BsrGI TGTACA 2 cut(s) 294, 550
BsrI ACTGG 2 cut(s) 334, 614
BssMI GATC 6 cut(s) 230, 281, 333, 405, 499, 694
Bst2UI CCWGG 1 cut(s) 674
Bst4CI ACNGT 5 cut(s) 224, 256, 288, 666, 829
Bst6I CTCTTC 2 cut(s) 363, 911
BstAUI TGTACA 2 cut(s) 294, 550
BstF5I GGATG 6 cut(s) 199, 275, 281, 531, 682, 900
BstFNI CGCG 1 cut(s) 521
BstKTI GATC 6 cut(s) 233, 284, 336, 408, 502, 697
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 6 cut(s) 230, 281, 333, 405, 499, 694
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 674
BstSCI CCNGG 1 cut(s) 672
BstSFI CTRYAG 2 cut(s) 63, 319
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 1 cut(s) 195
BstX2I RGATCY 3 cut(s) 230, 333, 499
BstYI RGATCY 3 cut(s) 230, 333, 499
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 6 cut(s) 199, 275, 281, 531, 682, 900
BtsI GCAGTG 1 cut(s) 380
BtsIMutI CAGTG 4 cut(s) 168, 284, 380, 637
Cfr13I GGNCC 1 cut(s) 757
CseI GACGC 1 cut(s) 92
Csp6I GTAC 5 cut(s) 107, 220, 295, 551, 639
CviAII CATG 3 cut(s) 208, 454, 484
CviQI GTAC 5 cut(s) 107, 220, 295, 551, 639
DpnI GATC 6 cut(s) 232, 283, 335, 407, 501, 696
DpnII GATC 6 cut(s) 230, 281, 333, 405, 499, 694
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 2 cut(s) 363, 911
EarI CTCTTC 2 cut(s) 363, 911
Eco32I GATATC 2 cut(s) 421, 516
Eco47I GGWCC 1 cut(s) 757
Eco57I CTGAAG 3 cut(s) 527, 613, 633
Eco88I CYCGRG 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 672
EcoRV GATATC 2 cut(s) 421, 516
FaeI CATG 3 cut(s) 211, 457, 487
FatI CATG 3 cut(s) 207, 453, 483
FauNDI CATATG 1 cut(s) 448
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 6 cut(s) 206, 282, 288, 538, 689, 907
Fsp4HI GCNGC 1 cut(s) 184
FspBI CTAG 1 cut(s) 618
GluI GCNGC 1 cut(s) 184
GsuI CTGGAG 1 cut(s) 413
HaeIII GGCC 1 cut(s) 249
HgaI GACGC 1 cut(s) 92
Hin1II CATG 3 cut(s) 211, 457, 487
HincII GTYRAC 1 cut(s) 795
HindII GTYRAC 1 cut(s) 795
HinfI GANTC 4 cut(s) 14, 382, 791, 809
Hpy166II GTNNAC 2 cut(s) 795, 825
Hpy188I TCNGA 1 cut(s) 507
Hpy188III TCNNGA 4 cut(s) 73, 124, 136, 260
Hpy8I GTNNAC 2 cut(s) 795, 825
Hpy99I CGWCG 1 cut(s) 390
HpyAV CCTTC 3 cut(s) 349, 551, 657
HpyCH4III ACNGT 5 cut(s) 224, 256, 288, 666, 829
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 6 cut(s) 302, 321, 339, 416, 725, 860
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 3 cut(s) 211, 457, 487
Kzo9I GATC 6 cut(s) 230, 281, 333, 405, 499, 694
LguI GCTCTTC 1 cut(s) 363
LpnPI CCDG 8 cut(s) 248, 307, 315, 377, 518, 595, 659, 686
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 3 cut(s) 48, 184, 452
MaeI CTAG 1 cut(s) 618
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 3 cut(s) 161, 325, 563
MalI GATC 6 cut(s) 232, 283, 335, 407, 501, 696
MboI GATC 6 cut(s) 230, 281, 333, 405, 499, 694
MflI RGATCY 3 cut(s) 230, 333, 499
MhlI GDGCHC 2 cut(s) 135, 483
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 3 cut(s) 340, 763, 783
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 2 cut(s) 23, 800
MmeI TCCRAC 2 cut(s) 192, 247
MnlI CCTC 4 cut(s) 184, 433, 583, 629
Mox20I TGGCCA 1 cut(s) 249
MscI TGGCCA 1 cut(s) 249
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 470
Msp20I TGGCCA 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 674
MvaI CCWGG 1 cut(s) 674
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeI CATATG 1 cut(s) 448
NdeII GATC 6 cut(s) 230, 281, 333, 405, 499, 694
NlaIII CATG 3 cut(s) 211, 457, 487
NmuCI GTSAC 1 cut(s) 563
PciSI GCTCTTC 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 474
PfeI GAWTC 2 cut(s) 382, 809
PfoI TCCNGGA 1 cut(s) 672
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 2 cut(s) 22, 799
PpsI GAGTC 2 cut(s) 22, 799
Psp6I CCWGG 1 cut(s) 672
PspGI CCWGG 1 cut(s) 672
PspPI GGNCC 1 cut(s) 757
PstI CTGCAG 1 cut(s) 323
PsuI RGATCY 3 cut(s) 230, 333, 499
RsaI GTAC 5 cut(s) 108, 221, 296, 552, 640
RsaNI GTAC 5 cut(s) 107, 220, 295, 551, 639
RseI CAYNNNNRTG 1 cut(s) 470
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 6 cut(s) 230, 281, 333, 405, 499, 694
Sau96I GGNCC 1 cut(s) 757
SchI GAGTC 2 cut(s) 23, 800
ScrFI CCNGG 1 cut(s) 674
SduI GDGCHC 2 cut(s) 135, 483
SetI ASST 7 cut(s) 24, 49, 70, 94, 188, 623, 640
SfaNI GCATC 3 cut(s) 48, 184, 452
SfcI CTRYAG 2 cut(s) 63, 319
SinI GGWCC 1 cut(s) 757
SmiMI CAYNNNNRTG 1 cut(s) 470
Sse9I AATT 3 cut(s) 340, 763, 783
SsiI CCGC 3 cut(s) 197, 519, 854
SspMI CTAG 1 cut(s) 618
StyD4I CCNGG 1 cut(s) 672
TaaI ACNGT 5 cut(s) 224, 256, 288, 666, 829
TaiI ACGT 1 cut(s) 24
TaqI TCGA 3 cut(s) 468, 477, 693
TasI AATT 3 cut(s) 340, 763, 783
TatI WGTACW 3 cut(s) 219, 294, 550
TfiI GAWTC 2 cut(s) 382, 809
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 4 cut(s) 175, 291, 380, 637
TseFI GTSAC 1 cut(s) 563
TseI GCWGC 1 cut(s) 183
Tsp45I GTSAC 1 cut(s) 563
TspDTI ATGAA 5 cut(s) 27, 117, 500, 542, 838
TspGWI ACGGA 1 cut(s) 897
TspRI CASTG 4 cut(s) 175, 291, 380, 637
VpaK11BI GGWCC 1 cut(s) 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 242
XspI CTAG 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.