Rw7G029820

(S)-coclaurine N-methyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
41626922 .. 41627876
955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G029820.1

Sequence Viewer

Length: 441 bp
ATGTCTAGGAATTGTCAGCTGGAGAATGTGGAGATCATTATTGCAGATATCAGCACATTTGAGATAGAGGCATCATATGACAGAATATTTTCCATCGAAATGTTTGAGGACGGCTTTCTGTTTGTACATCATTTCTGTCACAAAGCATTTGCTTACCACTTTGAGATAACTAGGTACTTCTTCAGCGGAGGTACAATGCTTTCAGCAAATCTACTACTGTATTTCCAGGATGATGTTTCTATTGTCGATCATTGGCTTGTCAATGGGAAGCATTATAATTGGGCTTCCATAAAACCAATTATGGAGTCAACTTATGGCAAGGATTCGATTGGGAAGTGGACTGTGTATTGGAGAACTTTCTTTATTGCAGTTGCAGAACTCTTTGGCTACAACAACGGAGAAAAATGGATGATTGCTCTCTTCCTATTCAAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

17.3

Weight (kDa)

5.82

Isoelectric Point (pI)

26.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010879)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 276
AciI CCGC 1 cut(s) 186
AcuI CTGAAG 1 cut(s) 166
AfaI GTAC 3 cut(s) 126, 176, 193
AgsI TTSAA 1 cut(s) 430
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Asp700I GAANNNNTTC 1 cut(s) 88
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 227
BfaI CTAG 2 cut(s) 6, 171
Bme1390I CCNGG 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 41
BseBI CCWGG 1 cut(s) 227
BseGI GGATG 2 cut(s) 235, 414
Bsp1407I TGTACA 1 cut(s) 124
Bsp143I GATC 2 cut(s) 33, 247
BspACI CCGC 1 cut(s) 186
BsrGI TGTACA 1 cut(s) 124
BssMI GATC 2 cut(s) 33, 247
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 2 cut(s) 219, 343
Bst6I CTCTTC 1 cut(s) 425
BstAUI TGTACA 1 cut(s) 124
BstF5I GGATG 2 cut(s) 235, 414
BstKTI GATC 2 cut(s) 36, 250
BstMBI GATC 2 cut(s) 33, 247
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BtsCI GGATG 2 cut(s) 235, 414
Csp6I GTAC 3 cut(s) 125, 175, 192
CviJI RGCY 5 cut(s) 19, 114, 256, 284, 387
CviKI_1 RGCY 5 cut(s) 19, 114, 256, 284, 387
CviQI GTAC 3 cut(s) 125, 175, 192
DpnI GATC 2 cut(s) 35, 249
DpnII GATC 2 cut(s) 33, 247
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Eco32I GATATC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 225
EcoRV GATATC 1 cut(s) 49
FaiI YATR 6 cut(s) 76, 78, 276, 290, 302, 315
FauNDI CATATG 1 cut(s) 76
FokI GGATG 2 cut(s) 242, 421
FspBI CTAG 2 cut(s) 6, 171
GsuI CTGGAG 1 cut(s) 41
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 2 cut(s) 305, 323
Hpy166II GTNNAC 2 cut(s) 309, 339
Hpy8I GTNNAC 2 cut(s) 309, 339
HpyCH4III ACNGT 2 cut(s) 219, 343
HpyCH4V TGCA 3 cut(s) 44, 368, 374
Kzo9I GATC 2 cut(s) 33, 247
LpnPI CCDG 3 cut(s) 5, 212, 239
LweI GCATC 1 cut(s) 80
MaeI CTAG 2 cut(s) 6, 171
MaeIII GTNAC 1 cut(s) 137
MalI GATC 2 cut(s) 35, 249
MboI GATC 2 cut(s) 33, 247
MboII GAAGA 2 cut(s) 172, 412
MluCI AATT 3 cut(s) 10, 277, 297
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 3 cut(s) 61, 100, 182
MroXI GAANNNNTTC 1 cut(s) 88
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 2 cut(s) 19, 186
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
NdeI CATATG 1 cut(s) 76
NdeII GATC 2 cut(s) 33, 247
NmuCI GTSAC 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 323
PfoI TCCNGGA 1 cut(s) 225
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PsiI TTATAA 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 3 cut(s) 126, 176, 193
RsaNI GTAC 3 cut(s) 125, 175, 192
RseI CAYNNNNRTG 1 cut(s) 98
Sau3AI GATC 2 cut(s) 33, 247
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 227
SetI ASST 3 cut(s) 21, 176, 193
SfaNI GCATC 1 cut(s) 80
SgeI CNNG 7 cut(s) 18, 32, 183, 238, 239, 269, 331
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 3 cut(s) 10, 277, 297
SsiI CCGC 1 cut(s) 186
SspI AATATT 1 cut(s) 87
SspMI CTAG 2 cut(s) 6, 171
StyD4I CCNGG 1 cut(s) 225
TaaI ACNGT 2 cut(s) 219, 343
TaqI TCGA 3 cut(s) 96, 246, 326
TasI AATT 3 cut(s) 10, 277, 297
TatI WGTACW 1 cut(s) 124
TfiI GAWTC 1 cut(s) 323
TseFI GTSAC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 137
TspGWI ACGGA 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 88
XspI CTAG 2 cut(s) 6, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.