AT4G33510

Phospho-2-dehydro-3-deoxyheptonate aldolase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
16116371 .. 16118825
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33510.1

Sequence Viewer

Length: 1524 bp
ATGGTGACTCTAAACGCTTCTTCTCCTCTCACGACCAAGTCGTTCCTCCCCTACCGTCACGCTCCTCGCCGTCCAATCTCTTTCTCCCCTGTCTTCGCCGTTCATTCGACTGACCCCAAGAAATCTACCCAATCAGCCTCCGCTTCGGTTAAATGGAGTCTAGAGAGTTGGAAGTCGAAGAAAGCTTTGCAATTGCCGGATTATCCTGATCAGAAGGATGTTGATTCGGTTCTACAGACGCTTTCTTCTTTTCCTCCTATAGTTTTCGCTGGTGAGGCTAGGAAACTAGAGGATAAGCTTGGTCAAGCGGCTATGGGTCAAGCCTTTATGCTTCAAGGTGGTGATTGTGCTGAGAGTTTCAAGGAATTTAACGCTAATAACATTAGAGACACCTTTAGGGTTCTTCTTCAGATGGGTGTTGTTCTCATGTTCGGTGGCCAGTTACCAGTTATCAAGGTGGGAAGAATGGCTGGTCAGTTTGCGAAGCCGAGATCAGACCCATTTGAGGAGAAAGATGGTGTGAAGCTGCCGAGTTACAGAGGAGATAACATAAATGGTGATGCTTTTGATGAGAAATCGAGGATTCCTGATCCTCATAGGATGGTTAGAGCGTACACACAGTCTGTGGCTACGTTGAATCTCTTGAGAGCATTTGCTACTGGAGGTTATGCAGCTATGCAGAGAGTTAGCCAGTGGAACCTTGATTTCACGCAACATAGTGAACAGGGTGACAGGTACCGTGAATTGGCTAATAGAGTTGATGAGGCTTTGGGATTCATGGGTGCAGCTGGACTTACTAGTGCTCACCCGATCATGACTACTACTGAGTTTTGGACATCCCATGAGTGTTTGTTATTGCCTTATGAGCAAGCACTCACAAGAGAGGATTCAACATCTGGACTTTACTATGATTGCTCTGCGCACATGCTTTGGGTTGGAGAACGAACTCGCCAACTTGATGGTGCTCATGTTGAGTTTCTGAGGGGAATCGCTAACCCCCTCGGAATCAAGGTGAGTGATAAAATGGTCCCTAGTGAACTGGTTAAGCTGATAGAGATACTAAACCCTCAGAACAAGCCTGGAAGGATTACGGTTATAGTGAGAATGGGAGCTGAGAATATGCGGGTCAAGCTTCCTAATTTGATCAGAGCAGTCCGTGGAGCCGGTCAGATTGTGACTTGGGTTAGTGATCCAATGCACGGAAACACAATCATGGCTCCTGGTGGGCTAAAAACTCGTTCTTTCGATGCAATCAGGGCGGAATTGAGAGCGTTCTTCGACGTCCATGATCAAGAAGGGAGTTTCCCTGGCGGGGTTCATTTAGAAATGACTGGTCAAAACGTGACAGAATGTGTCGGAGGGTCACGCACCATCACTTACAACGATCTAAGCTCACGCTACCACACTCACTGTGACCCAAGACTCAACGCATCTCAGTCTCTGGAGCTTGCATTCATCATTGCAGAGCGTCTGCGAAAGAGAAGGCTTGGTTCCGGGAATCTTCCGTCATCTATTGGAGTCTAG

Protein Analysis

507

Amino Acids

56.15

Weight (kDa)

8.93

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAHP_synth_2 PF01474 52 - 488 1e-203 Class-II DAHP synthetase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012776)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1284
Acc16I TGCGCA 1 cut(s) 921
Acc65I GGTACC 1 cut(s) 735
AccB1I GGYRCC 1 cut(s) 735
AciI CCGC 5 cut(s) 141, 308, 1123, 1259, 1311
AclWI GGATC 2 cut(s) 584, 1184
AcoI YGGCCR 1 cut(s) 436
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 392
AcyI GRCGYC 1 cut(s) 1281
AfaI GTAC 2 cut(s) 614, 737
AfiI CCNNNNNNNGG 4 cut(s) 505, 745, 1199, 1312
AgsI TTSAA 4 cut(s) 335, 361, 637, 891
AhlI ACTAGT 1 cut(s) 797
AjnI CCWGG 3 cut(s) 1078, 1219, 1306
Alw21I GWGCWC 2 cut(s) 805, 967
Alw26I GTCTC 2 cut(s) 381, 1443
AlwI GGATC 2 cut(s) 584, 1184
AlwNI CAGNNNCTG 1 cut(s) 1441
AoxI GGCC 1 cut(s) 436
ApeKI GCWGC 3 cut(s) 526, 671, 785
ApoI RAATTY 1 cut(s) 365
Asp718I GGTACC 1 cut(s) 735
AspLEI GCGC 1 cut(s) 922
AspS9I GGNCC 1 cut(s) 1027
AsuC2I CCSGG 1 cut(s) 1495
AsuHPI GGTGA 7 cut(s) 16, 284, 353, 569, 740, 797, 1024
AvaII GGWCC 1 cut(s) 1027
BalI TGGCCA 1 cut(s) 438
BanI GGYRCC 1 cut(s) 735
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 2 cut(s) 805, 967
BbvI GCAGC 3 cut(s) 513, 683, 797
BccI CCATC 5 cut(s) 406, 509, 595, 953, 1379
BceAI ACGGC 2 cut(s) 54, 83
BciT130I CCWGG 3 cut(s) 1080, 1221, 1308
BclI TGATCA 3 cut(s) 208, 1143, 1288
BcnI CCSGG 1 cut(s) 1495
BcoDI GTCTC 2 cut(s) 381, 1443
BcuI ACTAGT 1 cut(s) 797
BfaI CTAG 6 cut(s) 161, 279, 287, 798, 1032, 1522
BfmI CTRYAG 2 cut(s) 233, 258
BisI GCNGC 4 cut(s) 309, 527, 672, 786
BlsI GCNGC 4 cut(s) 310, 528, 673, 787
Bme1390I CCNGG 4 cut(s) 1080, 1221, 1308, 1495
Bme18I GGWCC 1 cut(s) 1027
BmgT120I GGNCC 1 cut(s) 1027
BmiI GGNNCC 6 cut(s) 698, 737, 1029, 1162, 1218, 1492
BmrFI CCNGG 4 cut(s) 1080, 1221, 1308, 1495
BmsI GCATC 3 cut(s) 550, 1237, 1439
BpiI GAAGAC 1 cut(s) 85
BpmI CTGGAG 2 cut(s) 681, 1463
BpuEI CTTGAG 1 cut(s) 664
BpuMI CCSGG 1 cut(s) 1495
BsaHI GRCGYC 1 cut(s) 1281
BsaJI CCNNGG 3 cut(s) 1000, 1156, 1306
Bsc4I CCNNNNNNNGG 4 cut(s) 505, 745, 1199, 1312
Bse118I RCCGGY 1 cut(s) 1163
Bse1I ACTGG 6 cut(s) 439, 446, 664, 691, 1044, 1336
Bse3DI GCAATG 1 cut(s) 1458
BseBI CCWGG 3 cut(s) 1080, 1221, 1308
BseDI CCNNGG 3 cut(s) 1000, 1156, 1306
BseGI GGATG 3 cut(s) 223, 606, 836
BseLI CCNNNNNNNGG 4 cut(s) 505, 745, 1199, 1312
BseMI GCAATG 1 cut(s) 1458
BseMII CTCAG 6 cut(s) 342, 816, 971, 1082, 1104, 1448
BseNI ACTGG 6 cut(s) 439, 446, 664, 691, 1044, 1336
BseRI GAGGAG 4 cut(s) 15, 54, 521, 555
BseXI GCAGC 3 cut(s) 513, 683, 797
BsgI GTGCAG 1 cut(s) 804
BshFI GGCC 1 cut(s) 438
BshNI GGYRCC 1 cut(s) 735
BsiHKAI GWGCWC 2 cut(s) 805, 967
BsiSI CCGG 3 cut(s) 197, 1164, 1494
BslFI GGGAC 1 cut(s) 1013
BslI CCNNNNNNNGG 4 cut(s) 505, 745, 1199, 1312
BsmAI GTCTC 2 cut(s) 381, 1443
BsmFI GGGAC 1 cut(s) 1013
BsmI GAATGC 1 cut(s) 1451
BsnI GGCC 1 cut(s) 438
Bsp1286I GDGCHC 2 cut(s) 805, 967
Bsp143I GATC 8 cut(s) 208, 491, 589, 810, 1143, 1189, 1288, 1384
BspACI CCGC 5 cut(s) 141, 308, 1123, 1259, 1311
BspANI GGCC 1 cut(s) 438
BspCNI CTCAG 6 cut(s) 343, 817, 972, 1081, 1105, 1447
BspHI TCATGA 1 cut(s) 813
BspLI GGNNCC 6 cut(s) 698, 737, 1029, 1162, 1218, 1492
BspPI GGATC 2 cut(s) 584, 1184
BspT107I GGYRCC 1 cut(s) 735
BsrDI GCAATG 1 cut(s) 1458
BsrFI RCCGGY 1 cut(s) 1163
BsrI ACTGG 6 cut(s) 439, 446, 664, 691, 1044, 1336
BssAI RCCGGY 1 cut(s) 1163
BssECI CCNNGG 3 cut(s) 1000, 1156, 1306
BssMI GATC 8 cut(s) 208, 491, 589, 810, 1143, 1189, 1288, 1384
BssNI GRCGYC 1 cut(s) 1281
Bst2UI CCWGG 3 cut(s) 1080, 1221, 1308
Bst4CI ACNGT 5 cut(s) 56, 621, 740, 1093, 1412
BstACI GRCGYC 1 cut(s) 1281
BstC8I GCNNGC 2 cut(s) 870, 1449
BstDEI CTNAG 7 cut(s) 351, 825, 980, 1068, 1113, 1388, 1434
BstDSI CCRYGG 1 cut(s) 1156
BstF5I GGATG 3 cut(s) 223, 606, 836
BstHHI GCGC 1 cut(s) 922
BstKTI GATC 8 cut(s) 211, 494, 592, 813, 1146, 1192, 1291, 1387
BstMAI GTCTC 2 cut(s) 381, 1443
BstMBI GATC 8 cut(s) 208, 491, 589, 810, 1143, 1189, 1288, 1384
BstMWI GCNNNNNNNGC 4 cut(s) 275, 865, 1129, 1256
BstNI CCWGG 3 cut(s) 1080, 1221, 1308
BstNSI RCATGY 1 cut(s) 928
BstSCI CCNGG 4 cut(s) 1078, 1219, 1306, 1493
BstSFI CTRYAG 2 cut(s) 233, 258
BstV1I GCAGC 3 cut(s) 513, 683, 797
BstV2I GAAGAC 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 959
BsuRI GGCC 1 cut(s) 438
BtgI CCRYGG 1 cut(s) 1156
BtsCI GGATG 3 cut(s) 223, 606, 836
BtsIMutI CAGTG 2 cut(s) 698, 1408
Cac8I GCNNGC 2 cut(s) 870, 1449
CaiI CAGNNNCTG 1 cut(s) 1441
CciI TCATGA 1 cut(s) 813
CfoI GCGC 1 cut(s) 922
Cfr10I RCCGGY 1 cut(s) 1163
Cfr13I GGNCC 1 cut(s) 1027
CseI GACGC 2 cut(s) 247, 1457
Csp6I GTAC 2 cut(s) 613, 736
CviAII CATG 8 cut(s) 427, 778, 814, 842, 925, 968, 1213, 1286
CviQI GTAC 2 cut(s) 613, 736
DdeI CTNAG 7 cut(s) 351, 825, 980, 1068, 1113, 1388, 1434
DpnI GATC 8 cut(s) 210, 493, 591, 812, 1145, 1191, 1290, 1386
DpnII GATC 8 cut(s) 208, 491, 589, 810, 1143, 1189, 1288, 1384
EaeI YGGCCR 1 cut(s) 436
EciI GGCGGA 1 cut(s) 1274
Eco47I GGWCC 1 cut(s) 1027
Eco57I CTGAAG 1 cut(s) 392
EcoRII CCWGG 3 cut(s) 1078, 1219, 1306
FaeI CATG 8 cut(s) 430, 781, 817, 845, 928, 971, 1216, 1289
FaqI GGGAC 1 cut(s) 1013
FatI CATG 8 cut(s) 426, 777, 813, 841, 924, 967, 1212, 1285
FauI CCCGC 2 cut(s) 1116, 1304
FbaI TGATCA 3 cut(s) 208, 1143, 1288
Fnu4HI GCNGC 4 cut(s) 309, 527, 672, 786
FokI GGATG 3 cut(s) 230, 613, 823
Fsp4HI GCNGC 4 cut(s) 309, 527, 672, 786
FspBI CTAG 6 cut(s) 161, 279, 287, 798, 1032, 1522
FspI TGCGCA 1 cut(s) 921
GlaI GCGC 1 cut(s) 921
GluI GCNGC 4 cut(s) 309, 527, 672, 786
GsuI CTGGAG 2 cut(s) 681, 1463
HaeIII GGCC 1 cut(s) 438
HapII CCGG 3 cut(s) 197, 1164, 1494
HgaI GACGC 2 cut(s) 247, 1457
HhaI GCGC 1 cut(s) 922
Hin1I GRCGYC 1 cut(s) 1281
Hin1II CATG 8 cut(s) 430, 781, 817, 845, 928, 971, 1216, 1289
Hin6I GCGC 1 cut(s) 920
HinP1I GCGC 1 cut(s) 920
HindIII AAGCTT 3 cut(s) 183, 296, 1130
HpaII CCGG 3 cut(s) 197, 1164, 1494
HphI GGTGA 7 cut(s) 16, 284, 353, 569, 740, 797, 1024
Hpy166II GTNNAC 3 cut(s) 615, 722, 1037
Hpy188I TCNGA 9 cut(s) 213, 411, 496, 981, 1004, 1071, 1148, 1170, 1358
Hpy188III TCNNGA 9 cut(s) 31, 161, 206, 587, 643, 814, 897, 1292, 1442
Hpy8I GTNNAC 3 cut(s) 615, 722, 1037
Hpy99I CGWCG 1 cut(s) 1283
HpyAV CCTTC 4 cut(s) 208, 1077, 1289, 1476
HpyCH4III ACNGT 5 cut(s) 56, 621, 740, 1093, 1412
HpyCH4IV ACGT 3 cut(s) 632, 1281, 1341
HpyCH4V TGCA 8 cut(s) 190, 671, 679, 785, 1198, 1250, 1451, 1463
HpyF10VI GCNNNNNNNGC 4 cut(s) 275, 865, 1129, 1256
HpyF3I CTNAG 7 cut(s) 351, 825, 980, 1068, 1113, 1388, 1434
HpySE526I ACGT 3 cut(s) 632, 1281, 1341
Hsp92I GRCGYC 1 cut(s) 1281
Hsp92II CATG 8 cut(s) 430, 781, 817, 845, 928, 971, 1216, 1289
HspAI GCGC 1 cut(s) 920
KpnI GGTACC 1 cut(s) 739
Ksp22I TGATCA 3 cut(s) 208, 1143, 1288
Kzo9I GATC 8 cut(s) 208, 491, 589, 810, 1143, 1189, 1288, 1384
LmnI GCTCC 5 cut(s) 67, 1109, 1160, 1222, 1444
Lsp1109I GCAGC 3 cut(s) 513, 683, 797
LweI GCATC 3 cut(s) 550, 1237, 1439
MaeI CTAG 6 cut(s) 161, 279, 287, 798, 1032, 1522
MaeII ACGT 3 cut(s) 632, 1281, 1341
MaeIII GTNAC 9 cut(s) 4, 56, 441, 533, 728, 1174, 1342, 1362, 1412
MalI GATC 8 cut(s) 210, 493, 591, 812, 1145, 1191, 1290, 1386
MboI GATC 8 cut(s) 208, 491, 589, 810, 1143, 1189, 1288, 1384
MboII GAAGA 9 cut(s) 12, 85, 190, 237, 395, 398, 474, 1267, 1493
MfeI CAATTG 1 cut(s) 191
MhlI GDGCHC 2 cut(s) 805, 967
MlsI TGGCCA 1 cut(s) 438
MluCI AATT 5 cut(s) 191, 365, 743, 1138, 1262
MluNI TGGCCA 1 cut(s) 438
MlyI GAGTC 2 cut(s) 166, 1416
MmeI TCCRAC 3 cut(s) 149, 916, 1336
Mox20I TGGCCA 1 cut(s) 438
MscI TGGCCA 1 cut(s) 438
MseI TTAA 3 cut(s) 150, 369, 1044
MslI CAYNNNNRTG 1 cut(s) 1211
Msp20I TGGCCA 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 788
MspI CCGG 3 cut(s) 197, 1164, 1494
MspR9I CCNGG 4 cut(s) 1080, 1221, 1308, 1495
MunI CAATTG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 1451
MvaI CCWGG 3 cut(s) 1080, 1221, 1308
MwoI GCNNNNNNNGC 4 cut(s) 275, 865, 1129, 1256
NciI CCSGG 1 cut(s) 1495
NdeII GATC 8 cut(s) 208, 491, 589, 810, 1143, 1189, 1288, 1384
NlaIII CATG 8 cut(s) 430, 781, 817, 845, 928, 971, 1216, 1289
NlaIV GGNNCC 6 cut(s) 698, 737, 1029, 1162, 1218, 1492
NmeAIII GCCGAG 2 cut(s) 513, 555
NmuCI GTSAC 7 cut(s) 4, 56, 728, 1174, 1342, 1362, 1412
NsbI TGCGCA 1 cut(s) 921
NspI RCATGY 1 cut(s) 928
PagI TCATGA 1 cut(s) 813
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PctI GAATGC 1 cut(s) 1451
PfeI GAWTC 8 cut(s) 224, 583, 637, 774, 887, 987, 1005, 1498
PflFI GACNNNGTC 1 cut(s) 37
PfoI TCCNGGA 1 cut(s) 1493
PkrI GCNGC 4 cut(s) 310, 528, 673, 787
PleI GAGTC 2 cut(s) 165, 1416
PpsI GAGTC 2 cut(s) 165, 1416
Psp6I CCWGG 3 cut(s) 1078, 1219, 1306
PspGI CCWGG 3 cut(s) 1078, 1219, 1306
PspN4I GGNNCC 6 cut(s) 698, 737, 1029, 1162, 1218, 1492
PspPI GGNCC 1 cut(s) 1027
PstNI CAGNNNCTG 1 cut(s) 1441
PsyI GACNNNGTC 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 788
RsaI GTAC 2 cut(s) 614, 737
RsaNI GTAC 2 cut(s) 613, 736
RseI CAYNNNNRTG 1 cut(s) 1211
SaqAI TTAA 3 cut(s) 150, 369, 1044
SatI GCNGC 4 cut(s) 309, 527, 672, 786
Sau3AI GATC 8 cut(s) 208, 491, 589, 810, 1143, 1189, 1288, 1384
Sau96I GGNCC 1 cut(s) 1027
SchI GAGTC 2 cut(s) 166, 1416
ScrFI CCNGG 4 cut(s) 1080, 1221, 1308, 1495
SduI GDGCHC 2 cut(s) 805, 967
SfaNI GCATC 3 cut(s) 550, 1237, 1439
SfcI CTRYAG 2 cut(s) 233, 258
SinI GGWCC 1 cut(s) 1027
SmiMI CAYNNNNRTG 1 cut(s) 1211
SmlI CTYRAG 1 cut(s) 643
SmoI CTYRAG 1 cut(s) 643
SpeI ACTAGT 1 cut(s) 797
Sse9I AATT 5 cut(s) 191, 365, 743, 1138, 1262
SsiI CCGC 5 cut(s) 141, 308, 1123, 1259, 1311
SspMI CTAG 6 cut(s) 161, 279, 287, 798, 1032, 1522
StyD4I CCNGG 4 cut(s) 1078, 1219, 1306, 1493
TaaI ACNGT 5 cut(s) 56, 621, 740, 1093, 1412
TaiI ACGT 3 cut(s) 635, 1284, 1344
TaqI TCGA 5 cut(s) 107, 176, 578, 1245, 1278
TasI AATT 5 cut(s) 191, 365, 743, 1138, 1262
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 8 cut(s) 224, 583, 637, 774, 887, 987, 1005, 1498
Tru1I TTAA 3 cut(s) 150, 369, 1044
Tru9I TTAA 3 cut(s) 150, 369, 1044
TscAI CASTG 2 cut(s) 698, 1415
TseFI GTSAC 7 cut(s) 4, 56, 728, 1174, 1342, 1362, 1412
TseI GCWGC 3 cut(s) 526, 671, 785
Tsp45I GTSAC 7 cut(s) 4, 56, 728, 1174, 1342, 1362, 1412
TspDTI ATGAA 4 cut(s) 92, 766, 1307, 1444
TspGWI ACGGA 3 cut(s) 1145, 1215, 1494
TspRI CASTG 2 cut(s) 698, 1415
Tth111I GACNNNGTC 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 1027
XapI RAATTY 1 cut(s) 365
XbaI TCTAGA 1 cut(s) 160
XceI RCATGY 1 cut(s) 928
XspI CTAG 6 cut(s) 161, 279, 287, 798, 1032, 1522
ZraI GACGTC 1 cut(s) 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.