Rw7G019360

Phospho-2-dehydro-3-deoxyheptonate aldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0012776
Physical Location & Seq
Reverse (-)
21431855 .. 21435646
3792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G019360.1

Sequence Viewer

Length: 1584 bp
ATGTCTCTGACAGCCACAGCCGCCGCCTCAGCAGCAGGCTCTGCTAATCTCACCACCCCAAACCCCTTCCTCTCCCGTACCACCACCCCAAAACCCACAACCCATTTCAAACTCTTCACTCTCCCCAAAAACCCCAAACGCACAATTTCCGCCGTCTCCTCGTCCCCTTCCGCAATTTCCTCCACCGCCGGGCCCTCCGACTGGGCCGTGGACTCATGGAAATCCAGGACGGCCCACCAGCTCCCGGTTTACCCGGACCCGGACGAGCTCCGGAACGTGTTGACCACCCTCGAGACCTTCCCGCCAATTGTCTTCGCCGGAGAGGCGAGGAGGCTGGAGACCTTGCTCGGCAAGGCGGCTCAAGGCGAGGCCTTTTTGCTTCAGGGAGGTGATTGCGCCGAGAGTTTCAAGGAGTTTAATGCTAATAATATTAGGGATACCTTCAGAGTCTTCTTGCAGATGGCCATCACTCTCATCTATGGGGCCCAAATGCCTGTCATCAAGGTTGGGAGAATGGCAGGCCAATTCGCAAAGCCTAGGTCTGATGATTTTGAGACTAGAGATGGTGTGAAGCTCCCAAGTTATCGGGGAGACAATATCAATGGTGATGCTTTTGATGAGAAATCTAGAATACCAGACCCACAAAGGTTACTGAGAGCATACCTCCAATCTGTTGGCACACTGAATCTCCTTAGAGCATTTGCCACTGGTGGTTATGCTGCAATGCAGAGAGTCTCAGATTGGAATCTTGACTTCGTAGAGCATAGCGAGCAAGCGAACAGGTACATGGAACTTGCACAGCGAGTGGATGAAGCTATTGGATTCCTTAGTGCTGCTGGGGTTACTGGTGACAATCCAATCATGAATACAATTGAGTTTTGGATATCTCATGAATGCCTCCATTTACCATATGAGCAGGCCTTGACTAGGGAGGATTCCACAACTGGCCGTTATTATGATTGTTCTGCCCACATGCTTTGGGTAGGGGAGAGGACTCGACAATTGGATGGGGCACATGTTGAATTCCTTCGTGGTGTATCCAATCCTCTTGGCATTAAGGTGAGTGATAAGATGGACCCAAATGAGCTTGTGAAACTGTGTGAGATTCTTAACCCTCACAACAGACCTGGTAGGTTGACAATAATTACCAGGATGGGAGCAGATAATATGCGGATAAAGCTCCCCCACTTGATCAGAGCTGTGCGCCAGGCAGGGCTTATTGTTACATGGGTCAGTGATCCCATGCATGGGAACACCATAAAGGCTCCATGTGGGCTCAAGACACGGCCATTTGATGCAATCAGGGCTGAATTGAGAGCCTTCTTTGACGTCCATGACCAAGAAGGGAGCTATCCTGGAGGAGTGCATCTGGAGATGACTGGGCAGAATGTGACAGAGTGCGTTGGAGGGTCAAAGACTGTAACCTTCAGTGACTTGAACTCCCGTTATCACACACATTGTGACCCCAGACTGAATGCATCGCAGTCGCTTGAGTTGGCCTTTTTAATATCAGATAGGCTGAGGAAAGACAGGTTAAAATCATCTAGGACTGGTTATCAGATGAATGGCAGTGCTCGAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024
Pfam Domains
Protein Families
DAHP_synth_2

Protein Analysis

527

Amino Acids

58.36

Weight (kDa)

8.38

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAHP_synth_2 PF01474 68 - 504 2.6e-202 Class-II DAHP synthetase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012776)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33510
fragaria_vesca FvH4_5g20460
malus_domestica MD04G1055100.v1.1 MD05G1042700.v1.1
prunus_persica Prupe.5G055000_v2.0.a1 Prupe.8G064200_v2.0.a1
pyrus_communis pycom05g03530
rosa_chinensis RchiOBHm_Chr7g0205781
rosa_laevigata RLG00000003355
rosa_multiflora Rmu_co8369421.1_g000001 Rmu_sc0000076.1_g000051 Rmu_sc0008518.1_g000012
rosa_roxburghii Rroxscaffold_3G00251990
rosa_rugosa Rorug07G0093000
rosa_samantha Rh7AG224500 Rh7CG238100 Rh7DG231200
rosa_wichuraiana Rw7G019360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1332
AccIII TCCGGA 1 cut(s) 270
AciI CCGC 8 cut(s) 21, 24, 150, 171, 186, 302, 356, 1171
AclWI GGATC 1 cut(s) 1232
AcoI YGGCCR 3 cut(s) 462, 946, 1286
AcsI RAATTY 1 cut(s) 1022
AcuI CTGAAG 3 cut(s) 365, 427, 1411
AcyI GRCGYC 1 cut(s) 1329
AdeI CACNNNGTG 1 cut(s) 1460
AfaI GTAC 2 cut(s) 79, 785
AfiI CCNNNNNNNGG 7 cut(s) 189, 201, 244, 259, 927, 1247, 1248
AflIII ACRYGT 2 cut(s) 276, 1015
AgsI TTSAA 4 cut(s) 109, 409, 1022, 1438
AjnI CCWGG 5 cut(s) 224, 1126, 1148, 1206, 1354
AluBI AGCT 8 cut(s) 241, 268, 574, 815, 1087, 1180, 1199, 1350
AluI AGCT 8 cut(s) 241, 268, 574, 815, 1087, 1180, 1199, 1350
Alw21I GWGCWC 2 cut(s) 270, 1576
Alw26I GTCTC 7 cut(s) 9, 160, 287, 332, 548, 585, 739
AlwI GGATC 1 cut(s) 1232
AlwNI CAGNNNCTG 1 cut(s) 41
Ama87I CYCGRG 2 cut(s) 290, 1575
Aor13HI TCCGGA 1 cut(s) 270
ApaI GGGCCC 2 cut(s) 195, 487
ApeKI GCWGC 3 cut(s) 32, 719, 833
ApoI RAATTY 1 cut(s) 1022
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
Asp700I GAANNNNTTC 1 cut(s) 1026
AspA2I CCTAGG 1 cut(s) 536
AspLEI GCGC 2 cut(s) 398, 1206
AspS9I GGNCC 8 cut(s) 191, 192, 204, 232, 256, 483, 484, 1075
AsuC2I CCSGG 4 cut(s) 190, 245, 254, 260
AsuHPI GGTGA 5 cut(s) 43, 401, 617, 860, 1072
AvaI CYCGRG 2 cut(s) 290, 1575
AvaII GGWCC 2 cut(s) 256, 1075
AvrII CCTAGG 1 cut(s) 536
BaeGI GKGCMC 3 cut(s) 195, 487, 1015
BalI TGGCCA 1 cut(s) 464
BanII GRGCYC 4 cut(s) 195, 270, 487, 1278
BbsI GAAGAC 2 cut(s) 304, 442
Bbv12I GWGCWC 2 cut(s) 270, 1576
BbvCI CCTCAGC 2 cut(s) 28, 1520
BbvI GCAGC 3 cut(s) 44, 706, 820
BccI CCATC 6 cut(s) 454, 473, 557, 1001, 1066, 1147
BceAI ACGGC 5 cut(s) 137, 191, 246, 933, 1301
BcgI CGANNNNNNTGC 2 cut(s) 1467, 1501
BciT130I CCWGG 5 cut(s) 226, 1128, 1150, 1208, 1356
BciVI GTATCC 2 cut(s) 430, 1048
BclI TGATCA 1 cut(s) 1191
BcnI CCSGG 4 cut(s) 190, 245, 254, 260
BcoDI GTCTC 7 cut(s) 9, 160, 287, 332, 548, 585, 739
BfaI CTAG 5 cut(s) 537, 558, 627, 927, 1545
BfuI GTATCC 2 cut(s) 430, 1048
BglI GCCNNNNNGGC 1 cut(s) 323
BisI GCNGC 6 cut(s) 21, 24, 33, 357, 720, 834
BlnI CCTAGG 1 cut(s) 536
BlsI GCNGC 6 cut(s) 22, 25, 34, 358, 721, 835
Bme1390I CCNGG 9 cut(s) 190, 226, 245, 254, 260, 1128, 1150, 1208, 1356
Bme18I GGWCC 2 cut(s) 256, 1075
BmeT110I CYCGRG 2 cut(s) 290, 1575
BmgT120I GGNCC 8 cut(s) 191, 192, 204, 232, 256, 483, 484, 1075
BmiI GGNNCC 6 cut(s) 193, 258, 484, 485, 1077, 1266
BmrFI CCNGG 9 cut(s) 190, 226, 245, 254, 260, 1128, 1150, 1208, 1356
BmrI ACTGGG 2 cut(s) 211, 1389
BmsI GCATC 4 cut(s) 598, 1285, 1375, 1487
BmuI ACTGGG 2 cut(s) 211, 1389
BpiI GAAGAC 2 cut(s) 304, 442
BplI GAGNNNNNCTC 2 cut(s) 648, 680
BpmI CTGGAG 3 cut(s) 356, 1377, 1391
Bpu10I CCTNAGC 2 cut(s) 28, 1520
BpuEI CTTGAG 3 cut(s) 345, 1262, 1511
BpuMI CCSGG 4 cut(s) 190, 245, 254, 260
BsaBI GATNNNNATC 2 cut(s) 464, 744
BsaHI GRCGYC 1 cut(s) 1329
BsaI GGTCTC 2 cut(s) 287, 332
BsaJI CCNNGG 2 cut(s) 207, 536
BsaWI WCCGGW 1 cut(s) 270
BsaXI ACNNNNNCTCC 4 cut(s) 672, 702, 1424, 1454
Bsc4I CCNNNNNNNGG 7 cut(s) 189, 201, 244, 259, 927, 1247, 1248
Bse1I ACTGG 6 cut(s) 206, 712, 850, 949, 1384, 1555
Bse3DI GCAATG 1 cut(s) 729
Bse8I GATNNNNATC 2 cut(s) 464, 744
BseAI TCCGGA 1 cut(s) 270
BseBI CCWGG 5 cut(s) 226, 1128, 1150, 1208, 1356
BseDI CCNNGG 2 cut(s) 207, 536
BseGI GGATG 3 cut(s) 814, 1012, 1158
BseJI GATNNNNATC 2 cut(s) 464, 744
BseLI CCNNNNNNNGG 7 cut(s) 189, 201, 244, 259, 927, 1247, 1248
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 4 cut(s) 42, 644, 750, 1511
BseNI ACTGG 6 cut(s) 206, 712, 850, 949, 1384, 1555
BseRI GAGGAG 3 cut(s) 148, 343, 1374
BseSI GKGCMC 3 cut(s) 195, 487, 1015
BseXI GCAGC 3 cut(s) 44, 706, 820
BseYI CCCAGC 1 cut(s) 836
BsiHKAI GWGCWC 2 cut(s) 270, 1576
BsiHKCI CYCGRG 2 cut(s) 290, 1575
BsiSI CCGG 6 cut(s) 189, 245, 254, 260, 271, 318
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 7 cut(s) 189, 201, 244, 259, 927, 1247, 1248
BsmAI GTCTC 7 cut(s) 9, 160, 287, 332, 548, 585, 739
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 148
BsmI GAATGC 2 cut(s) 899, 1480
Bso31I GGTCTC 2 cut(s) 287, 332
BsoBI CYCGRG 2 cut(s) 290, 1575
Bsp120I GGGCCC 2 cut(s) 191, 483
Bsp1286I GDGCHC 6 cut(s) 195, 270, 487, 1015, 1278, 1576
Bsp13I TCCGGA 1 cut(s) 270
Bsp143I GATC 2 cut(s) 1191, 1237
BspACI CCGC 8 cut(s) 21, 24, 150, 171, 186, 302, 356, 1171
BspCNI CTCAG 4 cut(s) 41, 645, 749, 1512
BspEI TCCGGA 1 cut(s) 270
BspHI TCATGA 2 cut(s) 861, 889
BspLI GGNNCC 6 cut(s) 193, 258, 484, 485, 1077, 1266
BspPI GGATC 1 cut(s) 1232
BspTNI GGTCTC 2 cut(s) 287, 332
BsrDI GCAATG 1 cut(s) 729
BsrI ACTGG 6 cut(s) 206, 712, 850, 949, 1384, 1555
BssECI CCNNGG 2 cut(s) 207, 536
BssMI GATC 2 cut(s) 1191, 1237
BssNI GRCGYC 1 cut(s) 1329
BssT1I CCWWGG 1 cut(s) 536
Bst2UI CCWGG 5 cut(s) 226, 1128, 1150, 1208, 1356
Bst4CI ACNGT 2 cut(s) 1098, 1420
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 1329
BstAPI GCANNNNNTGC 1 cut(s) 41
BstC8I GCNNGC 5 cut(s) 37, 520, 770, 774, 918
BstDEI CTNAG 6 cut(s) 28, 653, 692, 736, 827, 1520
BstDSI CCRYGG 1 cut(s) 207
BstENI CCTNNNNNAGG 1 cut(s) 925
BstF5I GGATG 3 cut(s) 814, 1012, 1158
BstHHI GCGC 2 cut(s) 398, 1206
BstKTI GATC 2 cut(s) 1194, 1240
BstMAI GTCTC 7 cut(s) 9, 160, 287, 332, 548, 585, 739
BstMBI GATC 2 cut(s) 1191, 1237
BstMWI GCNNNNNNNGC 8 cut(s) 20, 29, 32, 41, 323, 769, 1177, 1304
BstNI CCWGG 5 cut(s) 226, 1128, 1150, 1208, 1356
BstNSI RCATGY 2 cut(s) 976, 1019
BstSCI CCNGG 9 cut(s) 188, 224, 243, 252, 258, 1126, 1148, 1206, 1354
BstSLI GKGCMC 3 cut(s) 195, 487, 1015
BstV1I GCAGC 3 cut(s) 44, 706, 820
BstV2I GAAGAC 2 cut(s) 304, 442
BstXI CCANNNNNNTGG 1 cut(s) 674
BsuI GTATCC 2 cut(s) 430, 1048
BtgI CCRYGG 1 cut(s) 207
BtgZI GCGATG 1 cut(s) 1464
BtsCI GGATG 3 cut(s) 814, 1012, 1158
BtsI GCAGTG 1 cut(s) 1576
BtsIMutI CAGTG 5 cut(s) 680, 705, 1240, 1435, 1576
Cac8I GCNNGC 5 cut(s) 37, 520, 770, 774, 918
CaiI CAGNNNCTG 1 cut(s) 41
CciI TCATGA 2 cut(s) 861, 889
CfoI GCGC 2 cut(s) 398, 1206
Cfr13I GGNCC 8 cut(s) 191, 192, 204, 232, 256, 483, 484, 1075
CsiI ACCWGGT 1 cut(s) 1126
Csp6I GTAC 2 cut(s) 78, 784
CspCI CAANNNNNGTGG 2 cut(s) 959, 994
CviQI GTAC 2 cut(s) 78, 784
DdeI CTNAG 6 cut(s) 28, 653, 692, 736, 827, 1520
DpnI GATC 2 cut(s) 1193, 1239
DpnII GATC 2 cut(s) 1191, 1237
DraIII CACNNNGTG 1 cut(s) 1460
EaeI YGGCCR 3 cut(s) 462, 946, 1286
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 536
Eco147I AGGCCT 2 cut(s) 371, 920
Eco24I GRGCYC 4 cut(s) 195, 270, 487, 1278
Eco31I GGTCTC 2 cut(s) 287, 332
Eco32I GATATC 1 cut(s) 885
Eco47I GGWCC 2 cut(s) 256, 1075
Eco53kI GAGCTC 1 cut(s) 268
Eco57I CTGAAG 3 cut(s) 365, 427, 1411
Eco88I CYCGRG 2 cut(s) 290, 1575
EcoICRI GAGCTC 1 cut(s) 268
EcoNI CCTNNNNNAGG 1 cut(s) 925
EcoO109I RGGNCCY 2 cut(s) 192, 483
EcoRI GAATTC 1 cut(s) 1022
EcoRII CCWGG 5 cut(s) 224, 1126, 1148, 1206, 1354
EcoRV GATATC 1 cut(s) 885
EcoT14I CCWWGG 1 cut(s) 536
EcoT22I ATGCAT 2 cut(s) 1248, 1480
EcoT38I GRGCYC 4 cut(s) 195, 270, 487, 1278
ErhI CCWWGG 1 cut(s) 536
Esp3I CGTCTC 1 cut(s) 160
FaqI GGGAC 1 cut(s) 148
FauI CCCGC 1 cut(s) 309
FauNDI CATATG 1 cut(s) 910
FbaI TGATCA 1 cut(s) 1191
Fnu4HI GCNGC 6 cut(s) 21, 24, 33, 357, 720, 834
FokI GGATG 3 cut(s) 821, 1019, 1165
FriOI GRGCYC 4 cut(s) 195, 270, 487, 1278
Fsp4HI GCNGC 6 cut(s) 21, 24, 33, 357, 720, 834
FspBI CTAG 5 cut(s) 537, 558, 627, 927, 1545
GlaI GCGC 2 cut(s) 397, 1205
GluI GCNGC 6 cut(s) 21, 24, 33, 357, 720, 834
GsaI CCCAGC 1 cut(s) 840
GsuI CTGGAG 3 cut(s) 356, 1377, 1391
HapII CCGG 6 cut(s) 189, 245, 254, 260, 271, 318
HhaI GCGC 2 cut(s) 398, 1206
Hin1I GRCGYC 1 cut(s) 1329
Hin6I GCGC 2 cut(s) 396, 1204
HinP1I GCGC 2 cut(s) 396, 1204
HincII GTYRAC 2 cut(s) 282, 1137
HindII GTYRAC 2 cut(s) 282, 1137
HinfI GANTC 9 cut(s) 212, 447, 685, 732, 745, 822, 935, 994, 1105
HpaII CCGG 6 cut(s) 189, 245, 254, 260, 271, 318
HphI GGTGA 5 cut(s) 43, 401, 617, 860, 1072
Hpy166II GTNNAC 4 cut(s) 211, 250, 282, 1137
Hpy188I TCNGA 8 cut(s) 9, 199, 446, 544, 739, 1196, 1513, 1560
Hpy188III TCNNGA 8 cut(s) 271, 292, 627, 749, 862, 890, 1279, 1370
Hpy8I GTNNAC 4 cut(s) 211, 250, 282, 1137
HpyAV CCTTC 8 cut(s) 76, 177, 307, 451, 1037, 1330, 1337, 1435
HpyCH4III ACNGT 2 cut(s) 1098, 1420
HpyCH4IV ACGT 2 cut(s) 276, 1329
HpyCH4V TGCA 8 cut(s) 457, 722, 727, 797, 1246, 1298, 1366, 1478
HpyF10VI GCNNNNNNNGC 8 cut(s) 20, 29, 32, 41, 323, 769, 1177, 1304
HpyF3I CTNAG 6 cut(s) 28, 653, 692, 736, 827, 1520
HpySE526I ACGT 2 cut(s) 276, 1329
Hsp92I GRCGYC 1 cut(s) 1329
HspAI GCGC 2 cut(s) 396, 1204
Kpn2I TCCGGA 1 cut(s) 270
Ksp22I TGATCA 1 cut(s) 1191
Kzo9I GATC 2 cut(s) 1191, 1237
LmnI GCTCC 7 cut(s) 246, 273, 579, 1157, 1185, 1270, 1347
Lsp1109I GCAGC 3 cut(s) 44, 706, 820
LweI GCATC 4 cut(s) 598, 1285, 1375, 1487
MabI ACCWGGT 1 cut(s) 1126
MaeI CTAG 5 cut(s) 537, 558, 627, 927, 1545
MaeII ACGT 2 cut(s) 276, 1329
MaeIII GTNAC 8 cut(s) 648, 841, 848, 1222, 1390, 1420, 1430, 1460
MalI GATC 2 cut(s) 1193, 1239
MboI GATC 2 cut(s) 1191, 1237
MboII GAAGA 3 cut(s) 106, 304, 442
MfeI CAATTG 3 cut(s) 306, 870, 1001
MhlI GDGCHC 6 cut(s) 195, 270, 487, 1015, 1278, 1576
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 9 cut(s) 144, 174, 306, 524, 870, 1001, 1022, 1143, 1310
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 4 cut(s) 206, 456, 741, 988
MmeI TCCRAC 2 cut(s) 222, 1384
Mox20I TGGCCA 1 cut(s) 464
Mph1103I ATGCAT 2 cut(s) 1248, 1480
MroI TCCGGA 1 cut(s) 270
MroXI GAANNNNTTC 1 cut(s) 1026
MscI TGGCCA 1 cut(s) 464
MseI TTAA 5 cut(s) 417, 1056, 1110, 1505, 1535
MslI CAYNNNNRTG 1 cut(s) 1058
Msp20I TGGCCA 1 cut(s) 464
MspI CCGG 6 cut(s) 189, 245, 254, 260, 271, 318
MspR9I CCNGG 9 cut(s) 190, 226, 245, 254, 260, 1128, 1150, 1208, 1356
MunI CAATTG 3 cut(s) 306, 870, 1001
Mva1269I GAATGC 2 cut(s) 899, 1480
MvaI CCWGG 5 cut(s) 226, 1128, 1150, 1208, 1356
MwoI GCNNNNNNNGC 8 cut(s) 20, 29, 32, 41, 323, 769, 1177, 1304
NciI CCSGG 4 cut(s) 190, 245, 254, 260
NdeI CATATG 1 cut(s) 910
NdeII GATC 2 cut(s) 1191, 1237
NlaIV GGNNCC 6 cut(s) 193, 258, 484, 485, 1077, 1266
NmeAIII GCCGAG 2 cut(s) 327, 424
NmuCI GTSAC 4 cut(s) 848, 1390, 1430, 1460
NsiI ATGCAT 2 cut(s) 1248, 1480
NspI RCATGY 2 cut(s) 976, 1019
PaeR7I CTCGAG 2 cut(s) 290, 1575
PagI TCATGA 2 cut(s) 861, 889
PceI AGGCCT 2 cut(s) 371, 920
PciI ACATGT 1 cut(s) 1015
PctI GAATGC 2 cut(s) 899, 1480
PdmI GAANNNNTTC 1 cut(s) 1026
PfeI GAWTC 5 cut(s) 685, 745, 822, 935, 1105
PfoI TCCNGGA 2 cut(s) 224, 1354
PkrI GCNGC 6 cut(s) 22, 25, 34, 358, 721, 835
PleI GAGTC 4 cut(s) 206, 455, 740, 988
PpsI GAGTC 4 cut(s) 206, 455, 740, 988
PscI ACATGT 1 cut(s) 1015
Psp124BI GAGCTC 1 cut(s) 270
Psp6I CCWGG 5 cut(s) 224, 1126, 1148, 1206, 1354
PspFI CCCAGC 1 cut(s) 836
PspGI CCWGG 5 cut(s) 224, 1126, 1148, 1206, 1354
PspN4I GGNNCC 6 cut(s) 193, 258, 484, 485, 1077, 1266
PspOMI GGGCCC 2 cut(s) 191, 483
PspPI GGNCC 8 cut(s) 191, 192, 204, 232, 256, 483, 484, 1075
PspXI VCTCGAGB 1 cut(s) 1575
PstNI CAGNNNCTG 1 cut(s) 41
RsaI GTAC 2 cut(s) 79, 785
RsaNI GTAC 2 cut(s) 78, 784
RseI CAYNNNNRTG 1 cut(s) 1058
SacI GAGCTC 1 cut(s) 270
SaqAI TTAA 5 cut(s) 417, 1056, 1110, 1505, 1535
SatI GCNGC 6 cut(s) 21, 24, 33, 357, 720, 834
Sau3AI GATC 2 cut(s) 1191, 1237
Sau96I GGNCC 8 cut(s) 191, 192, 204, 232, 256, 483, 484, 1075
SchI GAGTC 4 cut(s) 206, 456, 741, 988
ScrFI CCNGG 9 cut(s) 190, 226, 245, 254, 260, 1128, 1150, 1208, 1356
SduI GDGCHC 6 cut(s) 195, 270, 487, 1015, 1278, 1576
SexAI ACCWGGT 1 cut(s) 1126
SfaNI GCATC 4 cut(s) 598, 1285, 1375, 1487
Sfr274I CTCGAG 2 cut(s) 290, 1575
SinI GGWCC 2 cut(s) 256, 1075
SlaI CTCGAG 2 cut(s) 290, 1575
SmiMI CAYNNNNRTG 1 cut(s) 1058
SmlI CTYRAG 5 cut(s) 290, 360, 1277, 1490, 1575
SmoI CTYRAG 5 cut(s) 290, 360, 1277, 1490, 1575
Sse9I AATT 9 cut(s) 144, 174, 306, 524, 870, 1001, 1022, 1143, 1310
SseBI AGGCCT 2 cut(s) 371, 920
SsiI CCGC 8 cut(s) 21, 24, 150, 171, 186, 302, 356, 1171
SspI AATATT 1 cut(s) 430
SspMI CTAG 5 cut(s) 537, 558, 627, 927, 1545
SstI GAGCTC 1 cut(s) 270
StuI AGGCCT 2 cut(s) 371, 920
StyD4I CCNGG 9 cut(s) 188, 224, 243, 252, 258, 1126, 1148, 1206, 1354
StyI CCWWGG 1 cut(s) 536
TaaI ACNGT 2 cut(s) 1098, 1420
TaiI ACGT 2 cut(s) 279, 1332
TaqI TCGA 3 cut(s) 291, 997, 1576
TasI AATT 9 cut(s) 144, 174, 306, 524, 870, 1001, 1022, 1143, 1310
TauI GCSGC 3 cut(s) 23, 26, 359
TfiI GAWTC 5 cut(s) 685, 745, 822, 935, 1105
Tru1I TTAA 5 cut(s) 417, 1056, 1110, 1505, 1535
Tru9I TTAA 5 cut(s) 417, 1056, 1110, 1505, 1535
TscAI CASTG 5 cut(s) 687, 712, 1240, 1435, 1576
TseFI GTSAC 4 cut(s) 848, 1390, 1430, 1460
TseI GCWGC 3 cut(s) 32, 719, 833
Tsp45I GTSAC 4 cut(s) 848, 1390, 1430, 1460
TspDTI ATGAA 4 cut(s) 825, 878, 906, 1577
TspRI CASTG 5 cut(s) 687, 712, 1240, 1435, 1576
VpaK11BI GGWCC 2 cut(s) 256, 1075
XagI CCTNNNNNAGG 1 cut(s) 925
XapI RAATTY 1 cut(s) 1022
XbaI TCTAGA 1 cut(s) 626
XceI RCATGY 2 cut(s) 976, 1019
XhoI CTCGAG 2 cut(s) 290, 1575
XmaJI CCTAGG 1 cut(s) 536
XmnI GAANNNNTTC 1 cut(s) 1026
XspI CTAG 5 cut(s) 537, 558, 627, 927, 1545
ZraI GACGTC 1 cut(s) 1330
Zsp2I ATGCAT 2 cut(s) 1248, 1480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.