MD04G1055100.v1.1

Phospho-2-dehydro-3-deoxyheptonate aldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0012776
Physical Location & Seq
Forward (+)
6609285 .. 6613167
3883 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1055100.v1.1.491

Sequence Viewer

Length: 1650 bp
ATGAATCTTGTATCAATCCAGCAGCATCACAGTCTGACTGAAGCACAGAAGAATAAACCTGACATGGCTCTGACACCTACAGCCACAGGCTTTGCTAACCTCACCGCCCCAAACCCCTTCCTCCATCGTACCACCGCCTCCTCACCACACACAAACCTTCTCAAACTCCTCCACCTCACCAGAAAGCCCAACCCCACCATCGCCACTCATTCATCACTCTCTCCTTCTTCCTCTTCCACGCTTTCATCCACCAATCTTGGGCCTTCAGCATGGGCCTTGGACTCGTGGAAATCCAAGCAGGCCCATCAGCTGCCGGTTTACCCGGACCCAGACGAGCTCCGGGATGTTCTGACGACTCTGGAGACGTTCCCGCCAATCGTGTTCGCCGGAGAGGCGAGGCGGCTGGAGACGTGGCTGGGAAAGGCCGCAGTGGGAGAGGCGTTTCTGCTGCAAGGCGGAGACTGCGCCGAGAGCTTCAAGGAGTTCAATGCCAATAACATCAGAGACACCTTCAGGGTCTTCTTGCAGATGGCCATTACTCTCATTTACGGCGCCCAAATGCCCGTCATCAAGGTTGGAAGAATGGCGGGCCAGTTTGCAAAGCCTCGCTCTGAACCATTTGAGGTTAGAGATGGCGTGAAACTCCCAAGTTATCGGGGAGACAATATCAACGGTGATGCCTTCGATGAAAAATCCAGAATACCAGACCCACAAAGGTTACTCAGAGCATACCTTCAATCTGTTGGCACACTGAATCTCCTTAGAGCATTTGCCACTGGTGGATACGCTGCCATGCAAAGAGTCTCAGATTGGAATCTGGACTTCGTAGAACATAGTGAGCAAGGAAACAGGTACATGGAACTTGCACAGAGAGTAGATGAAGCTATTGGTTTCCTTGATGCTGCTGGGGCTACTAGTGACAATCCAATAATGAACACGGTGGAGTTTTGGGTATCTCATGAATGCCTTCATTTACTGTACGAGCAAGCCTTGACTCGAGAGGATTCGACAACAGGACACTACTATGACTGTTCCGCACACATGCTGTGGGTAGGCGAGAGGACTCGACAATTGGATGGAGCACATGTTGAATTCCTTCGGGGTGTATCCAATCCTCTTGGCATTAAGGTGAGTGAAAAAATGGACCCAACAGAGCTTGTCAAATTGTGTGAAGTTCTTAACCCTCATAACAAACCTGGTAGACTGACAATAATTACCCGGATGGGGGCGGAAAATATGAGGAAAAAGCTCCCCCATTTGATCAGAGCTGTGCGCCAGGCAGGGCTTATCGTCACGTGGGTCAGTGATCCCATGCACGGGAACACCATAAAGGCTCCATGTGGGCTGAAGACACGGCCATTTGATGCAATCAGGGCTGAATTGAGAGCTTTCTTTGACGTCCATGAACAAGAAGGGAGCTATCCTGGAGGAGTGCATCTGGAGATGACTGGGCAGAATGTGACAGAGTGCATCGGAGGGTCAAAGGCTGTGACCGACAGTGACTTGACCTCTCGTTACCACACACATTGTGACCCCAGGCTGAATGCATCCCAGTCTCTTGAACTGGCCTTTTTGATAGCAGATCGATTGAGGAAAGACAGATTAAAATCTAACAAAGATTTTCCGGTCAATGGCAGTTCTAAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024
Pfam Domains
Protein Families
DAHP_synth_2

Protein Analysis

550

Amino Acids

60.99

Weight (kDa)

7.06

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAHP_synth_2 PF01474 91 - 527 4.1e-203 Class-II DAHP synthetase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012776)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33510
fragaria_vesca FvH4_5g20460
malus_domestica MD04G1055100.v1.1 MD05G1042700.v1.1
prunus_persica Prupe.5G055000_v2.0.a1 Prupe.8G064200_v2.0.a1
pyrus_communis pycom05g03530
rosa_chinensis RchiOBHm_Chr7g0205781
rosa_laevigata RLG00000003355
rosa_multiflora Rmu_co8369421.1_g000001 Rmu_sc0000076.1_g000051 Rmu_sc0008518.1_g000012
rosa_roxburghii Rroxscaffold_3G00251990
rosa_rugosa Rorug07G0093000
rosa_samantha Rh7AG224500 Rh7CG238100 Rh7DG231200
rosa_wichuraiana Rw7G019360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1401
AccB1I GGYRCC 1 cut(s) 551
AccI GTMKAC 1 cut(s) 1201
AciI CCGC 9 cut(s) 105, 135, 371, 400, 426, 456, 587, 1035, 1229
AclWI GGATC 1 cut(s) 1301
AcoI YGGCCR 2 cut(s) 531, 1355
AcsI RAATTY 1 cut(s) 1091
AcuI CTGAAG 4 cut(s) 60, 249, 496, 1367
AcvI CACGTG 1 cut(s) 1296
AcyI GRCGYC 2 cut(s) 552, 1398
AdeI CACNNNGTG 1 cut(s) 1529
AfaI GTAC 3 cut(s) 130, 854, 980
AfiI CCNNNNNNNGG 6 cut(s) 258, 1224, 1225, 1316, 1317, 1631
AflIII ACRYGT 1 cut(s) 1084
AgsI TTSAA 5 cut(s) 478, 487, 737, 1091, 1562
AhlI ACTAGT 1 cut(s) 914
AjiI CACGTC 1 cut(s) 411
AjnI CCWGG 4 cut(s) 1195, 1275, 1423, 1535
AluBI AGCT 9 cut(s) 310, 337, 474, 884, 1156, 1249, 1268, 1388, 1419
AluI AGCT 9 cut(s) 310, 337, 474, 884, 1156, 1249, 1268, 1388, 1419
Alw21I GWGCWC 2 cut(s) 339, 1084
Alw26I GTCTC 7 cut(s) 356, 401, 453, 498, 654, 808, 1560
AlwI GGATC 1 cut(s) 1301
Ama87I CYCGRG 1 cut(s) 996
AoxI GGCC 8 cut(s) 260, 273, 300, 423, 531, 589, 1355, 1566
ApeKI GCWGC 5 cut(s) 22, 310, 448, 788, 902
ApoI RAATTY 1 cut(s) 1091
Asp700I GAANNNNTTC 2 cut(s) 966, 1095
AspLEI GCGC 3 cut(s) 467, 554, 1275
AspS9I GGNCC 6 cut(s) 260, 273, 301, 325, 589, 1144
AsuC2I CCSGG 3 cut(s) 323, 341, 1219
AsuHPI GGTGA 5 cut(s) 94, 135, 169, 686, 1141
AvaI CYCGRG 1 cut(s) 996
AvaII GGWCC 2 cut(s) 325, 1144
BalI TGGCCA 1 cut(s) 533
BanI GGYRCC 1 cut(s) 551
BanII GRGCYC 1 cut(s) 339
BauI CACGAG 1 cut(s) 283
BbrPI CACGTG 1 cut(s) 1296
BbsI GAAGAC 2 cut(s) 511, 1355
Bbv12I GWGCWC 2 cut(s) 339, 1084
BbvI GCAGC 5 cut(s) 34, 297, 435, 775, 889
BccI CCATC 7 cut(s) 132, 206, 312, 523, 626, 1070, 1216
BceAI ACGGC 2 cut(s) 565, 1370
BciT130I CCWGG 4 cut(s) 1197, 1277, 1425, 1537
BciVI GTATCC 2 cut(s) 776, 1117
BclI TGATCA 1 cut(s) 1260
BcnI CCSGG 3 cut(s) 323, 341, 1219
BcoDI GTCTC 7 cut(s) 356, 401, 453, 498, 654, 808, 1560
BcuI ACTAGT 1 cut(s) 914
BfaI CTAG 1 cut(s) 915
BfmI CTRYAG 1 cut(s) 78
BfoI RGCGCY 1 cut(s) 555
BfuI GTATCC 2 cut(s) 776, 1117
BglI GCCNNNNNGGC 1 cut(s) 392
BisI GCNGC 7 cut(s) 23, 311, 401, 426, 449, 789, 903
BlsI GCNGC 7 cut(s) 24, 312, 402, 427, 450, 790, 904
Bme1390I CCNGG 7 cut(s) 323, 341, 1197, 1219, 1277, 1425, 1537
Bme18I GGWCC 2 cut(s) 325, 1144
BmeT110I CYCGRG 1 cut(s) 996
BmgBI CACGTC 1 cut(s) 411
BmgT120I GGNCC 6 cut(s) 260, 273, 301, 325, 589, 1144
BmiI GGNNCC 4 cut(s) 327, 553, 1146, 1335
BmrFI CCNGG 7 cut(s) 323, 341, 1197, 1219, 1277, 1425, 1537
BmrI ACTGGG 2 cut(s) 1458, 1546
BmsI GCATC 7 cut(s) 34, 667, 889, 1354, 1444, 1479, 1556
BmuI ACTGGG 2 cut(s) 1458, 1546
BpiI GAAGAC 2 cut(s) 511, 1355
BpmI CTGGAG 4 cut(s) 380, 425, 1446, 1460
BpuMI CCSGG 3 cut(s) 323, 341, 1219
Bsa29I ATCGAT 1 cut(s) 1585
BsaAI YACGTR 1 cut(s) 1296
BsaBI GATNNNNATC 2 cut(s) 813, 1606
BsaHI GRCGYC 2 cut(s) 552, 1398
BsaJI CCNNGG 2 cut(s) 276, 1535
BsaWI WCCGGW 1 cut(s) 1624
BsaXI ACNNNNNCTCC 4 cut(s) 741, 771, 1071, 1101
Bsc4I CCNNNNNNNGG 6 cut(s) 258, 1224, 1225, 1316, 1317, 1631
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 5 cut(s) 592, 781, 1453, 1552, 1569
Bse8I GATNNNNATC 2 cut(s) 813, 1606
BseBI CCWGG 4 cut(s) 1197, 1277, 1425, 1537
BseCI ATCGAT 1 cut(s) 1585
BseDI CCNNGG 2 cut(s) 276, 1535
BseGI GGATG 5 cut(s) 245, 349, 1081, 1227, 1547
BseJI GATNNNNATC 2 cut(s) 813, 1606
BseLI CCNNNNNNNGG 6 cut(s) 258, 1224, 1225, 1316, 1317, 1631
BseMII CTCAG 2 cut(s) 736, 819
BseNI ACTGG 5 cut(s) 592, 781, 1453, 1552, 1569
BseRI GAGGAG 3 cut(s) 130, 158, 1443
BseXI GCAGC 5 cut(s) 34, 297, 435, 775, 889
BseYI CCCAGC 2 cut(s) 415, 905
BshFI GGCC 8 cut(s) 262, 275, 302, 425, 533, 591, 1357, 1568
BshNI GGYRCC 1 cut(s) 551
BshVI ATCGAT 1 cut(s) 1585
BsiHKAI GWGCWC 2 cut(s) 339, 1084
BsiHKCI CYCGRG 1 cut(s) 996
BsiSI CCGG 6 cut(s) 314, 323, 340, 387, 1219, 1625
BslI CCNNNNNNNGG 6 cut(s) 258, 1224, 1225, 1316, 1317, 1631
BsmAI GTCTC 7 cut(s) 356, 401, 453, 498, 654, 808, 1560
BsmBI CGTCTC 2 cut(s) 356, 401
BsmI GAATGC 2 cut(s) 968, 1549
BsnI GGCC 8 cut(s) 262, 275, 302, 425, 533, 591, 1357, 1568
BsoBI CYCGRG 1 cut(s) 996
Bsp1286I GDGCHC 2 cut(s) 339, 1084
Bsp143I GATC 3 cut(s) 1260, 1306, 1582
BspACI CCGC 9 cut(s) 105, 135, 371, 400, 426, 456, 587, 1035, 1229
BspANI GGCC 8 cut(s) 262, 275, 302, 425, 533, 591, 1357, 1568
BspCNI CTCAG 2 cut(s) 735, 818
BspDI ATCGAT 1 cut(s) 1585
BspHI TCATGA 1 cut(s) 958
BspLI GGNNCC 4 cut(s) 327, 553, 1146, 1335
BspPI GGATC 1 cut(s) 1301
BspT107I GGYRCC 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 5 cut(s) 592, 781, 1453, 1552, 1569
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 2 cut(s) 276, 1535
BssMI GATC 3 cut(s) 1260, 1306, 1582
BssNI GRCGYC 2 cut(s) 552, 1398
BssSI CACGAG 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 283
Bst2UI CCWGG 4 cut(s) 1197, 1277, 1425, 1537
Bst4CI ACNGT 6 cut(s) 32, 674, 940, 978, 1031, 1499
Bst6I CTCTTC 1 cut(s) 238
BstACI GRCGYC 2 cut(s) 552, 1398
BstBAI YACGTR 1 cut(s) 1296
BstC8I GCNNGC 3 cut(s) 300, 589, 987
BstDEI CTNAG 3 cut(s) 722, 761, 805
BstF5I GGATG 5 cut(s) 245, 349, 1081, 1227, 1547
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 3 cut(s) 467, 554, 1275
BstKTI GATC 3 cut(s) 1263, 1309, 1585
BstMAI GTCTC 7 cut(s) 356, 401, 453, 498, 654, 808, 1560
BstMBI GATC 3 cut(s) 1260, 1306, 1582
BstMWI GCNNNNNNNGC 5 cut(s) 392, 462, 471, 908, 1373
BstNI CCWGG 4 cut(s) 1197, 1277, 1425, 1537
BstNSI RCATGY 2 cut(s) 1045, 1088
BstSCI CCNGG 7 cut(s) 321, 339, 1195, 1217, 1275, 1423, 1535
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 5 cut(s) 34, 297, 435, 775, 889
BstV2I GAAGAC 2 cut(s) 511, 1355
Bsu15I ATCGAT 1 cut(s) 1585
BsuI GTATCC 2 cut(s) 776, 1117
BsuRI GGCC 8 cut(s) 262, 275, 302, 425, 533, 591, 1357, 1568
BsuTUI ATCGAT 1 cut(s) 1585
BtgZI GCGATG 1 cut(s) 184
BtrI CACGTC 1 cut(s) 411
BtsCI GGATG 5 cut(s) 245, 349, 1081, 1227, 1547
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 5 cut(s) 435, 749, 774, 1309, 1504
Cac8I GCNNGC 3 cut(s) 300, 589, 987
CciI TCATGA 1 cut(s) 958
CfoI GCGC 3 cut(s) 467, 554, 1275
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 6 cut(s) 260, 273, 301, 325, 589, 1144
ClaI ATCGAT 1 cut(s) 1585
CsiI ACCWGGT 1 cut(s) 1195
Csp6I GTAC 3 cut(s) 129, 853, 979
CspCI CAANNNNNGTGG 6 cut(s) 73, 108, 238, 273, 1508, 1543
CviQI GTAC 3 cut(s) 129, 853, 979
DdeI CTNAG 3 cut(s) 722, 761, 805
DinI GGCGCC 1 cut(s) 553
DpnI GATC 3 cut(s) 1262, 1308, 1584
DpnII GATC 3 cut(s) 1260, 1306, 1582
DraIII CACNNNGTG 1 cut(s) 1529
EaeI YGGCCR 2 cut(s) 531, 1355
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
EciI GGCGGA 2 cut(s) 471, 1244
Ecl136II GAGCTC 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 339
Eco47I GGWCC 2 cut(s) 325, 1144
Eco53kI GAGCTC 1 cut(s) 337
Eco57I CTGAAG 4 cut(s) 60, 249, 496, 1367
Eco72I CACGTG 1 cut(s) 1296
Eco88I CYCGRG 1 cut(s) 996
EcoICRI GAGCTC 1 cut(s) 337
EcoRI GAATTC 1 cut(s) 1091
EcoRII CCWGG 4 cut(s) 1195, 1275, 1423, 1535
EcoT14I CCWWGG 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 1549
EcoT38I GRGCYC 1 cut(s) 339
EgeI GGCGCC 1 cut(s) 553
EheI GGCGCC 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 276
Esp3I CGTCTC 2 cut(s) 356, 401
FauI CCCGC 2 cut(s) 378, 580
FbaI TGATCA 1 cut(s) 1260
FblI GTMKAC 1 cut(s) 1201
Fnu4HI GCNGC 7 cut(s) 23, 311, 401, 426, 449, 789, 903
FokI GGATG 5 cut(s) 232, 356, 1088, 1234, 1534
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 7 cut(s) 23, 311, 401, 426, 449, 789, 903
FspBI CTAG 1 cut(s) 915
GlaI GCGC 3 cut(s) 466, 553, 1274
GluI GCNGC 7 cut(s) 23, 311, 401, 426, 449, 789, 903
GsaI CCCAGC 2 cut(s) 419, 909
GsuI CTGGAG 4 cut(s) 380, 425, 1446, 1460
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 8 cut(s) 262, 275, 302, 425, 533, 591, 1357, 1568
HapII CCGG 6 cut(s) 314, 323, 340, 387, 1219, 1625
HhaI GCGC 3 cut(s) 467, 554, 1275
Hin1I GRCGYC 2 cut(s) 552, 1398
Hin6I GCGC 3 cut(s) 465, 552, 1273
HinP1I GCGC 3 cut(s) 465, 552, 1273
HinfI GANTC 9 cut(s) 4, 281, 355, 754, 801, 814, 994, 1004, 1063
HpaII CCGG 6 cut(s) 314, 323, 340, 387, 1219, 1625
HphI GGTGA 5 cut(s) 94, 135, 169, 686, 1141
Hpy166II GTNNAC 2 cut(s) 319, 1202
Hpy188I TCNGA 9 cut(s) 36, 72, 351, 503, 613, 725, 808, 1265, 1475
Hpy188III TCNNGA 7 cut(s) 359, 696, 818, 959, 998, 1439, 1559
Hpy8I GTNNAC 2 cut(s) 319, 1202
HpyCH4III ACNGT 6 cut(s) 32, 674, 940, 978, 1031, 1499
HpyCH4IV ACGT 4 cut(s) 365, 410, 1295, 1398
HpyF10VI GCNNNNNNNGC 5 cut(s) 392, 462, 471, 908, 1373
HpyF3I CTNAG 3 cut(s) 722, 761, 805
HpySE526I ACGT 4 cut(s) 365, 410, 1295, 1398
Hsp92I GRCGYC 2 cut(s) 552, 1398
HspAI GCGC 3 cut(s) 465, 552, 1273
KasI GGCGCC 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 1260
Kzo9I GATC 3 cut(s) 1260, 1306, 1582
LmnI GCTCC 5 cut(s) 342, 1079, 1254, 1339, 1416
Lsp1109I GCAGC 5 cut(s) 34, 297, 435, 775, 889
LweI GCATC 7 cut(s) 34, 667, 889, 1354, 1444, 1479, 1556
MabI ACCWGGT 1 cut(s) 1195
MaeI CTAG 1 cut(s) 915
MaeII ACGT 4 cut(s) 365, 410, 1295, 1398
MaeIII GTNAC 8 cut(s) 717, 917, 1291, 1459, 1489, 1499, 1514, 1529
MalI GATC 3 cut(s) 1262, 1308, 1584
MboI GATC 3 cut(s) 1260, 1306, 1582
MboII GAAGA 6 cut(s) 61, 219, 225, 511, 591, 1360
MfeI CAATTG 1 cut(s) 1070
MhlI GDGCHC 2 cut(s) 339, 1084
MlsI TGGCCA 1 cut(s) 533
MluCI AATT 5 cut(s) 1070, 1091, 1163, 1212, 1379
MluNI TGGCCA 1 cut(s) 533
Mly113I GGCGCC 1 cut(s) 552
MlyI GAGTC 5 cut(s) 275, 349, 810, 988, 1057
MmeI TCCRAC 1 cut(s) 556
Mox20I TGGCCA 1 cut(s) 533
Mph1103I ATGCAT 1 cut(s) 1549
MroXI GAANNNNTTC 2 cut(s) 966, 1095
MscI TGGCCA 1 cut(s) 533
MseI TTAA 3 cut(s) 1125, 1179, 1604
MslI CAYNNNNRTG 2 cut(s) 1023, 1127
Msp20I TGGCCA 1 cut(s) 533
MspA1I CMGCKG 1 cut(s) 310
MspI CCGG 6 cut(s) 314, 323, 340, 387, 1219, 1625
MspR9I CCNGG 7 cut(s) 323, 341, 1197, 1219, 1277, 1425, 1537
MunI CAATTG 1 cut(s) 1070
Mva1269I GAATGC 2 cut(s) 968, 1549
MvaI CCWGG 4 cut(s) 1197, 1277, 1425, 1537
MwoI GCNNNNNNNGC 5 cut(s) 392, 462, 471, 908, 1373
NarI GGCGCC 1 cut(s) 552
NciI CCSGG 3 cut(s) 323, 341, 1219
NdeII GATC 3 cut(s) 1260, 1306, 1582
NlaIV GGNNCC 4 cut(s) 327, 553, 1146, 1335
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 6 cut(s) 917, 1291, 1459, 1489, 1499, 1529
NsiI ATGCAT 1 cut(s) 1549
NspI RCATGY 2 cut(s) 1045, 1088
PaeR7I CTCGAG 1 cut(s) 996
PagI TCATGA 1 cut(s) 958
PciI ACATGT 1 cut(s) 1084
PctI GAATGC 2 cut(s) 968, 1549
PdmI GAANNNNTTC 2 cut(s) 966, 1095
PfeI GAWTC 4 cut(s) 4, 754, 814, 1004
PfoI TCCNGGA 2 cut(s) 339, 1423
PkrI GCNGC 7 cut(s) 24, 312, 402, 427, 450, 790, 904
PleI GAGTC 5 cut(s) 275, 349, 809, 988, 1057
PluTI GGCGCC 1 cut(s) 555
PmaCI CACGTG 1 cut(s) 1296
PmlI CACGTG 1 cut(s) 1296
PpsI GAGTC 5 cut(s) 275, 349, 809, 988, 1057
Ppu21I YACGTR 1 cut(s) 1296
PscI ACATGT 1 cut(s) 1084
Psp124BI GAGCTC 1 cut(s) 339
Psp6I CCWGG 4 cut(s) 1195, 1275, 1423, 1535
PspCI CACGTG 1 cut(s) 1296
PspFI CCCAGC 2 cut(s) 415, 905
PspGI CCWGG 4 cut(s) 1195, 1275, 1423, 1535
PspN4I GGNNCC 4 cut(s) 327, 553, 1146, 1335
PspPI GGNCC 6 cut(s) 260, 273, 301, 325, 589, 1144
PvuII CAGCTG 1 cut(s) 310
RsaI GTAC 3 cut(s) 130, 854, 980
RsaNI GTAC 3 cut(s) 129, 853, 979
RseI CAYNNNNRTG 2 cut(s) 1023, 1127
SacI GAGCTC 1 cut(s) 339
SaqAI TTAA 3 cut(s) 1125, 1179, 1604
SatI GCNGC 7 cut(s) 23, 311, 401, 426, 449, 789, 903
Sau3AI GATC 3 cut(s) 1260, 1306, 1582
Sau96I GGNCC 6 cut(s) 260, 273, 301, 325, 589, 1144
SchI GAGTC 5 cut(s) 275, 349, 810, 988, 1057
ScrFI CCNGG 7 cut(s) 323, 341, 1197, 1219, 1277, 1425, 1537
SduI GDGCHC 2 cut(s) 339, 1084
SexAI ACCWGGT 1 cut(s) 1195
SfaNI GCATC 7 cut(s) 34, 667, 889, 1354, 1444, 1479, 1556
SfcI CTRYAG 1 cut(s) 78
SfoI GGCGCC 1 cut(s) 553
Sfr274I CTCGAG 1 cut(s) 996
SinI GGWCC 2 cut(s) 325, 1144
SlaI CTCGAG 1 cut(s) 996
SmiMI CAYNNNNRTG 2 cut(s) 1023, 1127
SmlI CTYRAG 1 cut(s) 996
SmoI CTYRAG 1 cut(s) 996
SpeI ACTAGT 1 cut(s) 914
Sse9I AATT 5 cut(s) 1070, 1091, 1163, 1212, 1379
SsiI CCGC 9 cut(s) 105, 135, 371, 400, 426, 456, 587, 1035, 1229
SspDI GGCGCC 1 cut(s) 551
SspMI CTAG 1 cut(s) 915
SstI GAGCTC 1 cut(s) 339
StyD4I CCNGG 7 cut(s) 321, 339, 1195, 1217, 1275, 1423, 1535
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 6 cut(s) 32, 674, 940, 978, 1031, 1499
TaiI ACGT 4 cut(s) 368, 413, 1298, 1401
TaqI TCGA 5 cut(s) 684, 997, 1007, 1066, 1585
TaqII GACCGA 1 cut(s) 1508
TasI AATT 5 cut(s) 1070, 1091, 1163, 1212, 1379
TauI GCSGC 2 cut(s) 403, 428
TfiI GAWTC 4 cut(s) 4, 754, 814, 1004
Tru1I TTAA 3 cut(s) 1125, 1179, 1604
Tru9I TTAA 3 cut(s) 1125, 1179, 1604
TscAI CASTG 5 cut(s) 435, 756, 781, 1309, 1504
TseFI GTSAC 6 cut(s) 917, 1291, 1459, 1489, 1499, 1529
TseI GCWGC 5 cut(s) 22, 310, 448, 788, 902
Tsp45I GTSAC 6 cut(s) 917, 1291, 1459, 1489, 1499, 1529
TspDTI ATGAA 9 cut(s) 17, 201, 234, 702, 894, 947, 959, 975, 1419
TspRI CASTG 5 cut(s) 435, 756, 781, 1309, 1504
VpaK11BI GGWCC 2 cut(s) 325, 1144
XapI RAATTY 1 cut(s) 1091
XceI RCATGY 2 cut(s) 1045, 1088
XhoI CTCGAG 1 cut(s) 996
XmiI GTMKAC 1 cut(s) 1201
XmnI GAANNNNTTC 2 cut(s) 966, 1095
XspI CTAG 1 cut(s) 915
ZraI GACGTC 1 cut(s) 1399
Zsp2I ATGCAT 1 cut(s) 1549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.