Rorug07G0093000

Phospho-2-dehydro-3-deoxyheptonate aldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012776
Physical Location & Seq
Forward (+)
7279313 .. 7304914
25602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0093000.1

Sequence Viewer

Length: 3042 bp
ATGGCCGTCCTGGCTTGCTTTAGGCTCGTACTAGTATTCACTGTGTTTCTATATGCGGCGGAGTCGAAGTACATACAGTACAATACGACGTCGGTCCTTGTTCCCGGGAAGCTGAACGTTCATTTGGTCGCTCACACCCACGACGACGTCGGATGGCTGAAGACCATTGACCAGTACTATGTTGGCTCCAATAATTCCATCCAGGGAGCTTGTGTTCAGAACGTGCTGGATTCGTTGGTTCCGGCATTGTTGGCTGACAAGAACCGCAAGTTTGTATACGTTGAGCAGGCATTTTTCCAAAGATGGTGGAGAGATCAGAGCGAGGAGGTGCAAGACACAGTCAAGGAGCTGGTCAGCTCTGGTCAACTGGAGCTCATAAATGGGGGGATGTGTATGCACGATGAGGCGGCTCCCCATTACATTGATATGATTGATCAGACAACTCTGGGGCATCGATTTATTAAGCAGGAATTCAATTTGACTCCTAGAATCGGTTGGCAAATTGATCCATTTGGACATTCTGCTGTGCAGGCTTACCTTTTGGGGGCTGAGGTTGGATTTGACTCTCTTTTCTTTGCGCGAATTGATTACCAAGACAGAGCTAAACGAAAAGTTGACAAAAGCCTTGAGGTTGTGTGGCGGGGTTCTAAGAGTCTAGGTTCATCTGCGCAGATTTTTGCTGGTGCATTTCCTGCGAATTATGAACCTCCAAGTGATAATTTCTACTTTGAAGTTAATGATGCTGCCCCTATTGTACAAGATAATATGGATTTGTTTGACTACAATGTGCCGGACCGCGTTAATGATTTCGTATCTGCTGCTTTGTCACAAGCGAACATTACTCGGACAAATCATATCATGTGGACCATGGGAACTGATTTTAAGTATCAATATGCTCATACATGGTTTCGGCAGATGGATAAATTCATTAATTATGTGAATCAAGATGGGCGTGTCAATGCCCTGTACTCAACCCCATCAATATATACTGATGCCAAATACGCCGCAGATGAGTCATGGCCGATCAAGAGTGATGACTTCTTTCCATATGCTGACAATGTAAATGCTTACTGGACTGGATACTTTACAAGCAGACCAGCCCTCAAAGGCTATGTAAGAGTGATGAGTGGCTACTATTTGGCAGCAAGACAATTGGAATTTTTTAAGGGACGGAGTAAATCAGGGCCCAACACAGAGTATTTGGCTGATGCTTTAGCAATTGCTCAACATCATGATGCAGTTAGTGGCACATCTAAGCAGCACGTGGCTAATGATTATGCAAAACGGCTTTCAATAGGTTATGTGGAGGCGGAGAAAGTTGTCGCAGAATCACTTTCTTGCATGACAGAGTCATCACAAGCTGGTTGCAAGAGTGTTGTAACCAAGTTTCAACAGTGTCCCCTTCTGAATATTAGCTATTGTCCATCGTCAGAAGTCGGTCTTTCAAAGGGGAAAGACCTGGTTATTGTTGTCTATAATTCTCTGGGATGGAAAAGAAAGGATGTGATAAAGATTCCTGTTGTCAGTGAAAATGTCATTGTAAAGGACTCTACTGGAAAAAAAATTGAATCACAGATTCTACCCCTGCTTAATGCATCCCTAAGCATAAGAAACAACCTTGTTAAGGCATATCTGGGTTTATCTCCGAGTGTGACCCCAAGTTATTGGCTTGCATTTTCAGCAACTGTACCACCTCTTGGCTTTAGCACTTACATTGTCTCAAGTGCCAAAAAGACAGCTACTACTTCAGAGCGACTTATTACAGAGTACAAGACAGAACAAAGTCAAAATAATGAAATCGAAGTGGGGCCAGGGAACTTGAAACTCATTTATTCTGGAAATGATGGAAAACTAATTGAATACAAAAACAGCAGAAGCTCGCTCAAAGAGTCGGTAGATCAATCATTTAGCTACTACCCTGGAGATGACGGAAAGCATGCAAATAAATCTGATTTACAGGCCTCAGGAGCATATGTCTTCCGTCCTAATGGTACATATCCCATTAAATCAGAAGGGCAGGTTTCTTTGACTATTTTAAGGGGACCATTGTTGGATGAAATACATGAAAGGATCAACTCTTGGATATATCAGGTCACTAGAGTGTACAGGGAAAAAGAGCATGCTGAGATTGAATTTACTATAGGGCCTATACCAGTTGATGATGGAATAGGCAAAGAGATTGTAACTAAGATTACAACCAGCATGAGAACCAACAAACAATTCTACACAGATTCTAACGGGCGCGATTTTATTCAAAGAATTCGAGACTACAGAAAAGACTGGGACCTGGAAGTAAACCAACCTGTCGCAGGAAACTATTATCCGATTAATCTGGGAATCTATACGAAAGATAACAACACAGAGCTGTCAGTATTAGTGGATAGATCGGTAGGGGGATCCAGCATTGTGGACGGGCAATTGGAACTGATGCTTCATAGGAGGTTGCTTGCAGATGATGACAAAGGTATTGCAGAGCAACTAAATGAAACGGTGTGCATTGAACATGATTGCAAAGGACTAACAATTACAGGAAAGTACCACCTGAGAATTGATCCTTTAGGAGAGGGTGCTAAGTGGCGTCGATCATTTGGTCAGGAGATATATTCTCCATTTCTATTAGCCTTCACAGAACAAGATGGAGATGACTGGACAAACTCTCATGTCACAACCTTTTCGGGAATGGATCCTTCCTACACTTTACCTGATAATGTTGCAATTATAACTCTCCAGGAGCTGGAAGATGGGAAAGTTCTCTTTCGCCTGGCGCATTTATACGAGATTGAAGAGGACAAGCATCTTTCAGTTATGGCAAGTGTGGAACTGAAAAAGGTGTTTGCAAACAAGAAGATAAAGCATTTAACAGAAATGAGCTTATCTGCTAACCAAGAAAGAAGGGAAATGGAAAGGAAGAGACTGGTTTGGAATGTGCAAGGCTCTTCTGAGGAAGGACCGAAAGGCTTGAGGGGAGGACCTGTTGATCCAACAAAGCTAGTGGTGAATCTTGCTCCAATGGAAATTCGAACATTTACCATCGACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024
Pfam Domains
Protein Families
DAHP_synth_2

Protein Analysis

1013

Amino Acids

114.24

Weight (kDa)

5.79

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_38N PF01074 39 - 351 3.4e-80 Glycosyl hydrolases family 38 N-terminal domain
Alpha-mann_mid PF09261 356 - 447 2.5e-21 Alpha mannosidase middle domain
Laman-like_dom PF21260 522 - 573 1.7e-08 Lysosomal alpha-mannosidase-like, central domain
Glyco_hydro_38C PF07748 604 - 819 2e-42 Glycosyl hydrolases family 38 C-terminal domain
Glyco_hydro38C2 PF17677 903 - 1009 2.3e-07 Glycosyl hydrolases family 38 C-terminal beta sandwich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012776)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33510
fragaria_vesca FvH4_5g20460
malus_domestica MD04G1055100.v1.1 MD05G1042700.v1.1
prunus_persica Prupe.5G055000_v2.0.a1 Prupe.8G064200_v2.0.a1
pyrus_communis pycom05g03530
rosa_chinensis RchiOBHm_Chr7g0205781
rosa_laevigata RLG00000003355
rosa_multiflora Rmu_co8369421.1_g000001 Rmu_sc0000076.1_g000051 Rmu_sc0008518.1_g000012
rosa_roxburghii Rroxscaffold_3G00251990
rosa_rugosa Rorug07G0093000
rosa_samantha Rh7AG224500 Rh7CG238100 Rh7DG231200
rosa_wichuraiana Rw7G019360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2720
AatII GACGTC 2 cut(s) 92, 150
Acc16I TGCGCA 1 cut(s) 669
Acc36I ACCTGC 1 cut(s) 2008
AccB7I CCANNNNNTGG 2 cut(s) 1697, 2734
AccI GTMKAC 1 cut(s) 276
AccII CGCG 3 cut(s) 580, 798, 2244
AciI CCGC 8 cut(s) 56, 59, 265, 407, 640, 796, 1005, 1310
AclI AACGTT 1 cut(s) 117
AclWI GGATC 8 cut(s) 500, 2078, 2391, 2404, 2546, 2678, 2691, 2972
AcoI YGGCCR 2 cut(s) 3, 1019
AcsI RAATTY 6 cut(s) 470, 923, 1157, 2132, 2259, 3015
AcuI CTGAAG 2 cut(s) 179, 1731
AcvI CACGTG 1 cut(s) 1264
AcyI GRCGYC 3 cut(s) 89, 147, 2578
AfiI CCNNNNNNNGG 6 cut(s) 491, 544, 1624, 1697, 2309, 2734
AhlI ACTAGT 1 cut(s) 31
AjnI CCWGG 8 cut(s) 9, 201, 1458, 1810, 1918, 2286, 2727, 2760
AjuI GAANNNNNNNTTGG 4 cut(s) 107, 139, 2204, 2236
AleI CACNNNNGTG 1 cut(s) 2099
AloI GAACNNNNNNTCC 2 cut(s) 198, 230
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 3 cut(s) 1723, 2259, 2905
AlwI GGATC 8 cut(s) 500, 2078, 2391, 2404, 2546, 2678, 2691, 2972
AlwNI CAGNNNCTG 2 cut(s) 1685, 2734
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 6 cut(s) 3, 1019, 1184, 1808, 1959, 2144
ApaI GGGCCC 1 cut(s) 1188
ApeKI GCWGC 4 cut(s) 743, 818, 1142, 1258
ApoI RAATTY 6 cut(s) 470, 923, 1157, 2132, 2259, 3015
AseI ATTAAT 2 cut(s) 930, 2328
AspLEI GCGC 4 cut(s) 580, 670, 2244, 2767
AsuC2I CCSGG 2 cut(s) 105, 106
AsuHPI GGTGA 1 cut(s) 3007
AsuII TTCGAA 1 cut(s) 3019
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 7 cut(s) 94, 793, 864, 2042, 2284, 2948, 2969
AxyI CCTNAGG 1 cut(s) 1963
BaeGI GKGCMC 1 cut(s) 1188
BamHI GGATCC 2 cut(s) 2396, 2683
BanII GRGCYC 2 cut(s) 375, 1188
BbrPI CACGTG 1 cut(s) 1264
BbsI GAAGAC 2 cut(s) 167, 1969
Bbv12I GWGCWC 1 cut(s) 375
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 4 cut(s) 730, 805, 1154, 1270
BceAI ACGGC 1 cut(s) 1301
BciT130I CCWGG 8 cut(s) 11, 203, 1460, 1812, 1920, 2288, 2729, 2762
BciVI GTATCC 1 cut(s) 1073
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 2 cut(s) 105, 106
BcoDI GTCTC 3 cut(s) 1723, 2259, 2905
BcuI ACTAGT 1 cut(s) 31
BfaI CTAG 6 cut(s) 32, 486, 656, 2097, 2990, 3040
BfmI CTRYAG 2 cut(s) 2139, 2269
BfuAI ACCTGC 1 cut(s) 2008
BfuI GTATCC 1 cut(s) 1073
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 7 cut(s) 57, 408, 744, 819, 1005, 1143, 1259
BlsI GCNGC 7 cut(s) 58, 409, 745, 820, 1006, 1144, 1260
BmcAI AGTACT 1 cut(s) 176
Bme18I GGWCC 7 cut(s) 94, 793, 864, 2042, 2284, 2948, 2969
BmeT110I CYCGRG 1 cut(s) 104
BmiI GGNNCC 9 cut(s) 187, 240, 411, 1186, 1809, 2043, 2285, 2398, 2685
BmrI ACTGGG 1 cut(s) 2290
BmsI GCATC 8 cut(s) 460, 730, 982, 1198, 1225, 1604, 2418, 2803
BmuI ACTGGG 1 cut(s) 2290
BoxI GACNNNNGTC 1 cut(s) 92
BpiI GAAGAC 2 cut(s) 167, 1969
BpmI CTGGAG 3 cut(s) 389, 1941, 2711
Bpu10I CCTNAGC 2 cut(s) 549, 1601
Bpu14I TTCGAA 1 cut(s) 3019
BpuEI CTTGAG 3 cut(s) 647, 1705, 2980
BpuMI CCSGG 2 cut(s) 105, 106
Bsa29I ATCGAT 1 cut(s) 454
BsaAI YACGTR 1 cut(s) 1264
BsaHI GRCGYC 3 cut(s) 89, 147, 2578
BsaJI CCNNGG 5 cut(s) 104, 202, 867, 1811, 1918
BsaXI ACNNNNNCTCC 8 cut(s) 53, 83, 198, 228, 1959, 1989, 2958, 2988
Bsc4I CCNNNNNNNGG 6 cut(s) 491, 544, 1624, 1697, 2309, 2734
Bse1I ACTGG 9 cut(s) 172, 372, 1076, 1081, 1558, 2153, 2285, 2651, 2919
Bse21I CCTNAGG 1 cut(s) 1963
BseBI CCWGG 8 cut(s) 11, 203, 1460, 1812, 1920, 2288, 2729, 2762
BseCI ATCGAT 1 cut(s) 454
BseDI CCNNGG 5 cut(s) 104, 202, 867, 1811, 1918
BseGI GGATG 7 cut(s) 158, 198, 393, 1493, 1507, 1595, 2059
BseLI CCNNNNNNNGG 6 cut(s) 491, 544, 1624, 1697, 2309, 2734
BseMII CTCAG 5 cut(s) 540, 1977, 2115, 2534, 2931
BseNI ACTGG 9 cut(s) 172, 372, 1076, 1081, 1558, 2153, 2285, 2651, 2919
BseRI GAGGAG 1 cut(s) 338
BseSI GKGCMC 1 cut(s) 1188
BseXI GCAGC 4 cut(s) 730, 805, 1154, 1270
BsgI GTGCAG 1 cut(s) 548
Bsh1236I CGCG 3 cut(s) 580, 798, 2244
BshFI GGCC 6 cut(s) 5, 1021, 1186, 1810, 1961, 2146
BshVI ATCGAT 1 cut(s) 454
BsiHKAI GWGCWC 1 cut(s) 375
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 3 cut(s) 105, 242, 791
BslFI GGGAC 4 cut(s) 1182, 1383, 2055, 2297
BslI CCNNNNNNNGG 6 cut(s) 491, 544, 1624, 1697, 2309, 2734
BsmAI GTCTC 3 cut(s) 1723, 2259, 2905
BsmFI GGGAC 4 cut(s) 1182, 1383, 2055, 2297
BsnI GGCC 6 cut(s) 5, 1021, 1186, 1810, 1961, 2146
BsoBI CYCGRG 1 cut(s) 104
Bsp119I TTCGAA 1 cut(s) 3019
Bsp120I GGGCCC 1 cut(s) 1184
Bsp1286I GDGCHC 2 cut(s) 375, 1188
Bsp1407I TGTACA 2 cut(s) 754, 2103
Bsp19I CCATGG 1 cut(s) 867
BspACI CCGC 8 cut(s) 56, 59, 265, 407, 640, 796, 1005, 1310
BspANI GGCC 6 cut(s) 5, 1021, 1186, 1810, 1961, 2146
BspCNI CTCAG 5 cut(s) 541, 1976, 2116, 2535, 2932
BspDI ATCGAT 1 cut(s) 454
BspFNI CGCG 3 cut(s) 580, 798, 2244
BspHI TCATGA 1 cut(s) 1231
BspLI GGNNCC 9 cut(s) 187, 240, 411, 1186, 1809, 2043, 2285, 2398, 2685
BspMI ACCTGC 1 cut(s) 2008
BspPI GGATC 8 cut(s) 500, 2078, 2391, 2404, 2546, 2678, 2691, 2972
BspQI GCTCTTC 1 cut(s) 2941
BspT104I TTCGAA 1 cut(s) 3019
BsrGI TGTACA 2 cut(s) 754, 2103
BsrI ACTGG 9 cut(s) 172, 372, 1076, 1081, 1558, 2153, 2285, 2651, 2919
BssECI CCNNGG 5 cut(s) 104, 202, 867, 1811, 1918
BssNAI GTATAC 1 cut(s) 277
BssNI GRCGYC 3 cut(s) 89, 147, 2578
BssT1I CCWWGG 1 cut(s) 867
Bst1107I GTATAC 1 cut(s) 277
Bst2UI CCWGG 8 cut(s) 11, 203, 1460, 1812, 1920, 2288, 2729, 2762
Bst4CI ACNGT 6 cut(s) 43, 78, 340, 1395, 1687, 2491
Bst6I CTCTTC 3 cut(s) 2778, 2903, 2941
BstACI GRCGYC 3 cut(s) 89, 147, 2578
BstAPI GCANNNNNTGC 1 cut(s) 692
BstAUI TGTACA 2 cut(s) 754, 2103
BstBAI YACGTR 1 cut(s) 1264
BstBI TTCGAA 1 cut(s) 3019
BstC8I GCNNGC 8 cut(s) 16, 288, 531, 1671, 1880, 1938, 2121, 2448
BstDSI CCRYGG 1 cut(s) 867
BstENI CCTNNNNNAGG 2 cut(s) 1622, 2307
BstF5I GGATG 7 cut(s) 158, 198, 393, 1493, 1507, 1595, 2059
BstFNI CGCG 3 cut(s) 580, 798, 2244
BstHHI GCGC 4 cut(s) 580, 670, 2244, 2767
BstMAI GTCTC 3 cut(s) 1723, 2259, 2905
BstMWI GCNNNNNNNGC 7 cut(s) 11, 251, 530, 692, 1001, 1679, 1967
BstNI CCWGG 8 cut(s) 11, 203, 1460, 1812, 1920, 2288, 2729, 2762
BstNSI RCATGY 2 cut(s) 1940, 2123
BstPAI GACNNNNGTC 1 cut(s) 92
BstSFI CTRYAG 2 cut(s) 2139, 2269
BstSLI GKGCMC 1 cut(s) 1188
BstUI CGCG 3 cut(s) 580, 798, 2244
BstV1I GCAGC 4 cut(s) 730, 805, 1154, 1270
BstV2I GAAGAC 2 cut(s) 167, 1969
BstX2I RGATCY 2 cut(s) 2396, 2683
BstXI CCANNNNNNTGG 2 cut(s) 1665, 2407
BstYI RGATCY 2 cut(s) 2396, 2683
BstZ17I GTATAC 1 cut(s) 277
Bsu15I ATCGAT 1 cut(s) 454
Bsu36I CCTNAGG 1 cut(s) 1963
BsuI GTATCC 1 cut(s) 1073
BsuRI GGCC 6 cut(s) 5, 1021, 1186, 1810, 1961, 2146
BsuTUI ATCGAT 1 cut(s) 454
BtgI CCRYGG 1 cut(s) 867
BtsCI GGATG 7 cut(s) 158, 198, 393, 1493, 1507, 1595, 2059
BtsIMutI CAGTG 3 cut(s) 39, 1400, 1531
BveI ACCTGC 1 cut(s) 2008
Cac8I GCNNGC 8 cut(s) 16, 288, 531, 1671, 1880, 1938, 2121, 2448
CaiI CAGNNNCTG 2 cut(s) 1685, 2734
CciI TCATGA 1 cut(s) 1231
CfoI GCGC 4 cut(s) 580, 670, 2244, 2767
Cfr9I CCCGGG 1 cut(s) 104
ClaI ATCGAT 1 cut(s) 454
CpoI CGGWCCG 1 cut(s) 793
CseI GACGC 1 cut(s) 2567
CsiI ACCWGGT 1 cut(s) 1458
CspCI CAANNNNNGTGG 4 cut(s) 287, 322, 2973, 3008
CspI CGGWCCG 1 cut(s) 793
EaeI YGGCCR 2 cut(s) 3, 1019
Eam1104I CTCTTC 3 cut(s) 2778, 2903, 2941
EarI CTCTTC 3 cut(s) 2778, 2903, 2941
EciI GGCGGA 2 cut(s) 74, 1325
Ecl136II GAGCTC 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 867
Eco147I AGGCCT 1 cut(s) 1961
Eco24I GRGCYC 2 cut(s) 375, 1188
Eco47I GGWCC 7 cut(s) 94, 793, 864, 2042, 2284, 2948, 2969
Eco53kI GAGCTC 1 cut(s) 373
Eco57I CTGAAG 2 cut(s) 179, 1731
Eco72I CACGTG 1 cut(s) 1264
Eco81I CCTNAGG 1 cut(s) 1963
Eco88I CYCGRG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 373
EcoNI CCTNNNNNAGG 2 cut(s) 1622, 2307
EcoO109I RGGNCCY 4 cut(s) 1184, 2144, 2284, 2969
EcoRI GAATTC 2 cut(s) 470, 2259
EcoRII CCWGG 8 cut(s) 9, 201, 1458, 1810, 1918, 2286, 2727, 2760
EcoT14I CCWWGG 1 cut(s) 867
EcoT22I ATGCAT 1 cut(s) 1597
EcoT38I GRGCYC 2 cut(s) 375, 1188
ErhI CCWWGG 1 cut(s) 867
FalI AAGNNNNNCTT 2 cut(s) 1425, 1457
FaqI GGGAC 4 cut(s) 1182, 1383, 2055, 2297
FauI CCCGC 1 cut(s) 633
FauNDI CATATG 2 cut(s) 1048, 1972
FbaI TGATCA 1 cut(s) 433
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 7 cut(s) 57, 408, 744, 819, 1005, 1143, 1259
FokI GGATG 7 cut(s) 165, 185, 400, 1500, 1514, 1582, 2066
FriOI GRGCYC 2 cut(s) 375, 1188
Fsp4HI GCNGC 7 cut(s) 57, 408, 744, 819, 1005, 1143, 1259
FspBI CTAG 6 cut(s) 32, 486, 656, 2097, 2990, 3040
FspI TGCGCA 1 cut(s) 669
GlaI GCGC 4 cut(s) 579, 669, 2243, 2766
GluI GCNGC 7 cut(s) 57, 408, 744, 819, 1005, 1143, 1259
GsuI CTGGAG 3 cut(s) 389, 1941, 2711
HaeIII GGCC 6 cut(s) 5, 1021, 1186, 1810, 1961, 2146
HapII CCGG 3 cut(s) 105, 242, 791
HgaI GACGC 1 cut(s) 2567
HhaI GCGC 4 cut(s) 580, 670, 2244, 2767
Hin1I GRCGYC 3 cut(s) 89, 147, 2578
Hin6I GCGC 4 cut(s) 578, 668, 2242, 2765
HinP1I GCGC 4 cut(s) 578, 668, 2242, 2765
HincII GTYRAC 2 cut(s) 365, 616
HindII GTYRAC 2 cut(s) 365, 616
HpaII CCGG 3 cut(s) 105, 242, 791
HphI GGTGA 1 cut(s) 3007
Hpy166II GTNNAC 7 cut(s) 277, 365, 616, 864, 2104, 2296, 2410
Hpy188III TCNNGA 8 cut(s) 944, 1027, 1232, 1836, 1965, 2264, 2594, 2676
Hpy8I GTNNAC 7 cut(s) 277, 365, 616, 864, 2104, 2296, 2410
Hpy99I CGWCG 6 cut(s) 91, 94, 146, 149, 152, 2583
HpyAV CCTTC 6 cut(s) 1412, 2006, 2632, 2697, 2886, 2939
HpyCH4III ACNGT 6 cut(s) 43, 78, 340, 1395, 1687, 2491
HpyCH4IV ACGT 6 cut(s) 89, 117, 147, 222, 279, 1263
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 251, 530, 692, 1001, 1679, 1967
HpySE526I ACGT 6 cut(s) 89, 117, 147, 222, 279, 1263
Hsp92I GRCGYC 3 cut(s) 89, 147, 2578
HspAI GCGC 4 cut(s) 578, 668, 2242, 2765
Ksp22I TGATCA 1 cut(s) 433
LguI GCTCTTC 1 cut(s) 2941
LmnI GCTCC 8 cut(s) 191, 206, 346, 370, 415, 1967, 2731, 3010
Lsp1109I GCAGC 4 cut(s) 730, 805, 1154, 1270
LweI GCATC 8 cut(s) 460, 730, 982, 1198, 1225, 1604, 2418, 2803
MabI ACCWGGT 1 cut(s) 1458
MaeI CTAG 6 cut(s) 32, 486, 656, 2097, 2990, 3040
MaeII ACGT 6 cut(s) 89, 117, 147, 222, 279, 1263
MaeIII GTNAC 6 cut(s) 825, 1378, 1651, 2092, 2182, 2662
MboII GAAGA 7 cut(s) 172, 1969, 2750, 2795, 2857, 2920, 2928
MfeI CAATTG 3 cut(s) 1151, 1218, 2417
MflI RGATCY 2 cut(s) 2396, 2683
MhlI GDGCHC 2 cut(s) 375, 1188
MlyI GAGTC 8 cut(s) 71, 475, 557, 661, 1022, 1358, 1541, 1898
MmeI TCCRAC 4 cut(s) 130, 535, 2031, 3005
Mph1103I ATGCAT 1 cut(s) 1597
MslI CAYNNNNRTG 3 cut(s) 425, 1233, 2099
MspI CCGG 3 cut(s) 105, 242, 791
MunI CAATTG 3 cut(s) 1151, 1218, 2417
MvaI CCWGG 8 cut(s) 11, 203, 1460, 1812, 1920, 2288, 2729, 2762
MvnI CGCG 3 cut(s) 580, 798, 2244
MwoI GCNNNNNNNGC 7 cut(s) 11, 251, 530, 692, 1001, 1679, 1967
NciI CCSGG 2 cut(s) 105, 106
NcoI CCATGG 1 cut(s) 867
NdeI CATATG 2 cut(s) 1048, 1972
NlaIV GGNNCC 9 cut(s) 187, 240, 411, 1186, 1809, 2043, 2285, 2398, 2685
NmuCI GTSAC 4 cut(s) 825, 1651, 2092, 2662
NsbI TGCGCA 1 cut(s) 669
NsiI ATGCAT 1 cut(s) 1597
NspI RCATGY 2 cut(s) 1940, 2123
NspV TTCGAA 1 cut(s) 3019
OliI CACNNNNGTG 1 cut(s) 2099
PaeI GCATGC 2 cut(s) 1940, 2123
PagI TCATGA 1 cut(s) 1231
PceI AGGCCT 1 cut(s) 1961
PciSI GCTCTTC 1 cut(s) 2941
PflFI GACNNNGTC 3 cut(s) 146, 338, 1348
PflMI CCANNNNNTGG 2 cut(s) 1697, 2734
PfoI TCCNGGA 1 cut(s) 2727
PkrI GCNGC 7 cut(s) 58, 409, 745, 820, 1006, 1144, 1260
PleI GAGTC 8 cut(s) 70, 475, 557, 660, 1021, 1357, 1541, 1897
PmaCI CACGTG 1 cut(s) 1264
PmlI CACGTG 1 cut(s) 1264
PpsI GAGTC 8 cut(s) 70, 475, 557, 660, 1021, 1357, 1541, 1897
Ppu21I YACGTR 1 cut(s) 1264
PpuMI RGGWCCY 2 cut(s) 2284, 2969
PshAI GACNNNNGTC 1 cut(s) 92
PshBI ATTAAT 2 cut(s) 930, 2328
PsiI TTATAA 1 cut(s) 2720
Psp124BI GAGCTC 1 cut(s) 375
Psp1406I AACGTT 1 cut(s) 117
Psp5II RGGWCCY 2 cut(s) 2284, 2969
Psp6I CCWGG 8 cut(s) 9, 201, 1458, 1810, 1918, 2286, 2727, 2760
PspCI CACGTG 1 cut(s) 1264
PspGI CCWGG 8 cut(s) 9, 201, 1458, 1810, 1918, 2286, 2727, 2760
PspN4I GGNNCC 9 cut(s) 187, 240, 411, 1186, 1809, 2043, 2285, 2398, 2685
PspOMI GGGCCC 1 cut(s) 1184
PspPPI RGGWCCY 2 cut(s) 2284, 2969
PstNI CAGNNNCTG 2 cut(s) 1685, 2734
PsuI RGATCY 2 cut(s) 2396, 2683
PsyI GACNNNGTC 3 cut(s) 146, 338, 1348
RseI CAYNNNNRTG 3 cut(s) 425, 1233, 2099
Rsr2I CGGWCCG 1 cut(s) 793
RsrII CGGWCCG 1 cut(s) 793
SacI GAGCTC 1 cut(s) 375
SapI GCTCTTC 1 cut(s) 2941
SatI GCNGC 7 cut(s) 57, 408, 744, 819, 1005, 1143, 1259
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 8 cut(s) 71, 475, 557, 661, 1022, 1358, 1541, 1898
SduI GDGCHC 2 cut(s) 375, 1188
SexAI ACCWGGT 1 cut(s) 1458
SfaNI GCATC 8 cut(s) 460, 730, 982, 1198, 1225, 1604, 2418, 2803
SfcI CTRYAG 2 cut(s) 2139, 2269
SfuI TTCGAA 1 cut(s) 3019
SinI GGWCC 7 cut(s) 94, 793, 864, 2042, 2284, 2948, 2969
SmaI CCCGGG 1 cut(s) 106
SmiMI CAYNNNNRTG 3 cut(s) 425, 1233, 2099
SmlI CTYRAG 3 cut(s) 626, 1720, 2959
SmoI CTYRAG 3 cut(s) 626, 1720, 2959
SpeI ACTAGT 1 cut(s) 31
SphI GCATGC 2 cut(s) 1940, 2123
SseBI AGGCCT 1 cut(s) 1961
SsiI CCGC 8 cut(s) 56, 59, 265, 407, 640, 796, 1005, 1310
SspI AATATT 1 cut(s) 1411
SspMI CTAG 6 cut(s) 32, 486, 656, 2097, 2990, 3040
SstI GAGCTC 1 cut(s) 375
StuI AGGCCT 1 cut(s) 1961
StyI CCWWGG 1 cut(s) 867
TaaI ACNGT 6 cut(s) 43, 78, 340, 1395, 1687, 2491
TaiI ACGT 6 cut(s) 92, 120, 150, 225, 282, 1266
TaqI TCGA 7 cut(s) 65, 454, 1800, 2263, 2581, 3019, 3033
TaqII GACCGA 3 cut(s) 82, 1427, 2965
TatI WGTACW 7 cut(s) 69, 78, 174, 754, 966, 1767, 2103
TauI GCSGC 3 cut(s) 59, 410, 1007
TscAI CASTG 3 cut(s) 46, 1400, 1531
TseFI GTSAC 4 cut(s) 825, 1651, 2092, 2662
TseI GCWGC 4 cut(s) 743, 818, 1142, 1258
Tsp45I GTSAC 4 cut(s) 825, 1651, 2092, 2662
TspDTI ATGAA 9 cut(s) 110, 651, 717, 916, 1809, 2070, 2079, 2423, 2499
TspGWI ACGGA 3 cut(s) 1186, 1944, 1970
TspMI CCCGGG 1 cut(s) 104
TspRI CASTG 3 cut(s) 46, 1400, 1531
Tth111I GACNNNGTC 3 cut(s) 146, 338, 1348
Van91I CCANNNNNTGG 2 cut(s) 1697, 2734
VpaK11BI GGWCC 7 cut(s) 94, 793, 864, 2042, 2284, 2948, 2969
VspI ATTAAT 2 cut(s) 930, 2328
XagI CCTNNNNNAGG 2 cut(s) 1622, 2307
XapI RAATTY 6 cut(s) 470, 923, 1157, 2132, 2259, 3015
XceI RCATGY 2 cut(s) 1940, 2123
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XmaI CCCGGG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 6 cut(s) 32, 486, 656, 2097, 2990, 3040
ZraI GACGTC 2 cut(s) 90, 148
ZrmI AGTACT 1 cut(s) 176
Zsp2I ATGCAT 1 cut(s) 1597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.