Rmu_co8369421.1_g000001

Phospho-2-dehydro-3-deoxyheptonate aldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8369421.1
OG0012776
Physical Location & Seq
Reverse (-)
1 .. 1106
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8369421.1_g000001.1.cds

Sequence Viewer

Length: 794 bp
atggaacttgcacagcgagtggatgaagctattggattccttagtgctgctggggttactggtgacaatccaatcatgaatacaattgagttttggatatctcatgaatgcctccatttaccatatgagcaggccttgactagggaggattctacaactggccgttattatgattgttctgcccacatgctttgggtaggggagaggactcgacaattggatggggcacatgttgaattccttcgtggtgtatccaatcctcttggcattaaggtgagtgataagatggacccaaatgagcttgtgaaactgtgtgagattcttaaccctcacaacagacctggtaggctgacaataattaccaggatgggagcagataatatgcggataaagctcccccacttgatcagagctgtgcgccaggcagggcttattgttacatgggtcagtgatcccatgcatgggaacaccataaaggctccatgtgggctcaagacacggccatttgatgcaatcagggctgaattgagagccttctttgacgtccatgaccaagaagggagctatcctggaggagtgcatctggagatgactgggcagaatgtgacagagtgcgttggagggtcaaagactgtaaccttcagtgacttgaactcccgttatcacacacattgtgaccccagactgaatgcatcgcagtcgcttgagttggcctttttaatatcagataggctgaggaaagacaggttaaaatcatctaggactgattatcagatgaatggcagtgctcaagc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024
Pfam Domains
Protein Families
DAHP_synth_2

Protein Analysis

265

Amino Acids

29.69

Weight (kDa)

6.59

Isoelectric Point (pI)

27.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012776)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33510
fragaria_vesca FvH4_5g20460
malus_domestica MD04G1055100.v1.1 MD05G1042700.v1.1
prunus_persica Prupe.5G055000_v2.0.a1 Prupe.8G064200_v2.0.a1
pyrus_communis pycom05g03530
rosa_chinensis RchiOBHm_Chr7g0205781
rosa_laevigata RLG00000003355
rosa_multiflora Rmu_co8369421.1_g000001 Rmu_sc0000076.1_g000051 Rmu_sc0008518.1_g000012
rosa_roxburghii Rroxscaffold_3G00251990
rosa_rugosa Rorug07G0093000
rosa_samantha Rh7AG224500 Rh7CG238100 Rh7DG231200
rosa_wichuraiana Rw7G019360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 546
AciI CCGC 1 cut(s) 385
AclWI GGATC 1 cut(s) 446
AcoI YGGCCR 2 cut(s) 160, 500
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 625
AcyI GRCGYC 1 cut(s) 543
AdeI CACNNNGTG 1 cut(s) 674
AfiI CCNNNNNNNGG 3 cut(s) 141, 461, 462
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 2 cut(s) 236, 652
AjnI CCWGG 4 cut(s) 340, 362, 420, 568
AluBI AGCT 5 cut(s) 29, 301, 394, 413, 564
AluI AGCT 5 cut(s) 29, 301, 394, 413, 564
Alw21I GWGCWC 1 cut(s) 790
AlwI GGATC 1 cut(s) 446
AoxI GGCC 4 cut(s) 132, 160, 500, 711
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 74, 286
AvaII GGWCC 1 cut(s) 289
BaeGI GKGCMC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 790
BbvCI CCTCAGC 1 cut(s) 734
BbvI GCAGC 1 cut(s) 34
BccI CCATC 3 cut(s) 215, 280, 361
BceAI ACGGC 2 cut(s) 147, 515
BcgI CGANNNNNNTGC 2 cut(s) 681, 715
BciT130I CCWGG 4 cut(s) 342, 364, 422, 570
BciVI GTATCC 1 cut(s) 262
BclI TGATCA 1 cut(s) 405
BfaI CTAG 2 cut(s) 141, 759
BfuI GTATCC 1 cut(s) 262
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 4 cut(s) 342, 364, 422, 570
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 291, 480
BmrFI CCNGG 4 cut(s) 342, 364, 422, 570
BmrI ACTGGG 1 cut(s) 603
BmsI GCATC 3 cut(s) 499, 589, 701
BmuI ACTGGG 1 cut(s) 603
BpmI CTGGAG 2 cut(s) 591, 605
Bpu10I CCTNAGC 1 cut(s) 734
BpuEI CTTGAG 3 cut(s) 476, 725, 774
BsaHI GRCGYC 1 cut(s) 543
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 461, 462
Bse1I ACTGG 3 cut(s) 64, 163, 598
BseBI CCWGG 4 cut(s) 342, 364, 422, 570
BseGI GGATG 3 cut(s) 28, 226, 372
BseLI CCNNNNNNNGG 3 cut(s) 141, 461, 462
BseMII CTCAG 1 cut(s) 725
BseNI ACTGG 3 cut(s) 64, 163, 598
BseRI GAGGAG 1 cut(s) 588
BseSI GKGCMC 1 cut(s) 229
BseXI GCAGC 1 cut(s) 34
BseYI CCCAGC 1 cut(s) 50
BshFI GGCC 4 cut(s) 134, 162, 502, 713
BsiHKAI GWGCWC 1 cut(s) 790
BslI CCNNNNNNNGG 3 cut(s) 141, 461, 462
BsmI GAATGC 2 cut(s) 113, 694
BsnI GGCC 4 cut(s) 134, 162, 502, 713
Bsp1286I GDGCHC 3 cut(s) 229, 492, 790
Bsp143I GATC 2 cut(s) 405, 451
BspACI CCGC 1 cut(s) 385
BspANI GGCC 4 cut(s) 134, 162, 502, 713
BspCNI CTCAG 1 cut(s) 726
BspHI TCATGA 2 cut(s) 75, 103
BspLI GGNNCC 2 cut(s) 291, 480
BspPI GGATC 1 cut(s) 446
BsrI ACTGG 3 cut(s) 64, 163, 598
BssMI GATC 2 cut(s) 405, 451
BssNI GRCGYC 1 cut(s) 543
Bst2UI CCWGG 4 cut(s) 342, 364, 422, 570
Bst4CI ACNGT 2 cut(s) 312, 634
BstACI GRCGYC 1 cut(s) 543
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 2 cut(s) 41, 734
BstENI CCTNNNNNAGG 1 cut(s) 139
BstF5I GGATG 3 cut(s) 28, 226, 372
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 2 cut(s) 408, 454
BstMBI GATC 2 cut(s) 405, 451
BstMWI GCNNNNNNNGC 2 cut(s) 391, 518
BstNI CCWGG 4 cut(s) 342, 364, 422, 570
BstNSI RCATGY 2 cut(s) 190, 233
BstSCI CCNGG 4 cut(s) 340, 362, 420, 568
BstSLI GKGCMC 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 34
BsuI GTATCC 1 cut(s) 262
BsuRI GGCC 4 cut(s) 134, 162, 502, 713
BtgZI GCGATG 1 cut(s) 678
BtsCI GGATG 3 cut(s) 28, 226, 372
BtsI GCAGTG 1 cut(s) 790
BtsIMutI CAGTG 3 cut(s) 454, 649, 790
Cac8I GCNNGC 1 cut(s) 132
CciI TCATGA 2 cut(s) 75, 103
CfoI GCGC 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 289
CsiI ACCWGGT 1 cut(s) 340
CspCI CAANNNNNGTGG 2 cut(s) 173, 208
CviAII CATG 9 cut(s) 76, 104, 187, 230, 441, 457, 461, 483, 548
DdeI CTNAG 2 cut(s) 41, 734
DpnI GATC 2 cut(s) 407, 453
DpnII GATC 2 cut(s) 405, 451
DraIII CACNNNGTG 1 cut(s) 674
EaeI YGGCCR 2 cut(s) 160, 500
Eco147I AGGCCT 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 492
Eco32I GATATC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 625
EcoNI CCTNNNNNAGG 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 4 cut(s) 340, 362, 420, 568
EcoRV GATATC 1 cut(s) 99
EcoT22I ATGCAT 2 cut(s) 462, 694
EcoT38I GRGCYC 1 cut(s) 492
FaeI CATG 9 cut(s) 79, 107, 190, 233, 444, 460, 464, 486, 551
FatI CATG 9 cut(s) 75, 103, 186, 229, 440, 456, 460, 482, 547
FauNDI CATATG 1 cut(s) 124
FbaI TGATCA 1 cut(s) 405
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 3 cut(s) 35, 233, 379
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 2 cut(s) 141, 759
GlaI GCGC 1 cut(s) 419
GluI GCNGC 1 cut(s) 48
GsaI CCCAGC 1 cut(s) 54
GsuI CTGGAG 2 cut(s) 591, 605
HaeIII GGCC 4 cut(s) 134, 162, 502, 713
HhaI GCGC 1 cut(s) 420
Hin1I GRCGYC 1 cut(s) 543
Hin1II CATG 9 cut(s) 79, 107, 190, 233, 444, 460, 464, 486, 551
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HinfI GANTC 4 cut(s) 36, 149, 208, 319
HphI GGTGA 2 cut(s) 74, 286
Hpy188I TCNGA 3 cut(s) 410, 727, 774
Hpy188III TCNNGA 4 cut(s) 76, 104, 493, 584
HpyAV CCTTC 4 cut(s) 251, 544, 551, 649
HpyCH4III ACNGT 2 cut(s) 312, 634
HpyCH4IV ACGT 1 cut(s) 543
HpyCH4V TGCA 5 cut(s) 11, 460, 512, 580, 692
HpyF10VI GCNNNNNNNGC 2 cut(s) 391, 518
HpyF3I CTNAG 2 cut(s) 41, 734
HpySE526I ACGT 1 cut(s) 543
Hsp92I GRCGYC 1 cut(s) 543
Hsp92II CATG 9 cut(s) 79, 107, 190, 233, 444, 460, 464, 486, 551
HspAI GCGC 1 cut(s) 418
Ksp22I TGATCA 1 cut(s) 405
Kzo9I GATC 2 cut(s) 405, 451
LmnI GCTCC 4 cut(s) 371, 399, 484, 561
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 3 cut(s) 499, 589, 701
MabI ACCWGGT 1 cut(s) 340
MaeI CTAG 2 cut(s) 141, 759
MaeII ACGT 1 cut(s) 543
MaeIII GTNAC 7 cut(s) 55, 62, 436, 604, 634, 644, 674
MalI GATC 2 cut(s) 407, 453
MboI GATC 2 cut(s) 405, 451
MfeI CAATTG 2 cut(s) 84, 215
MhlI GDGCHC 3 cut(s) 229, 492, 790
MluCI AATT 5 cut(s) 84, 215, 236, 357, 524
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 598
MnlI CCTC 8 cut(s) 122, 139, 198, 270, 339, 566, 614, 729
Mph1103I ATGCAT 2 cut(s) 462, 694
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 4 cut(s) 270, 324, 719, 749
MslI CAYNNNNRTG 1 cut(s) 272
MspR9I CCNGG 4 cut(s) 342, 364, 422, 570
MunI CAATTG 2 cut(s) 84, 215
Mva1269I GAATGC 2 cut(s) 113, 694
MvaI CCWGG 4 cut(s) 342, 364, 422, 570
MwoI GCNNNNNNNGC 2 cut(s) 391, 518
NdeI CATATG 1 cut(s) 124
NdeII GATC 2 cut(s) 405, 451
NlaIII CATG 9 cut(s) 79, 107, 190, 233, 444, 460, 464, 486, 551
NlaIV GGNNCC 2 cut(s) 291, 480
NmuCI GTSAC 4 cut(s) 62, 604, 644, 674
NsiI ATGCAT 2 cut(s) 462, 694
NspI RCATGY 2 cut(s) 190, 233
PagI TCATGA 2 cut(s) 75, 103
PceI AGGCCT 1 cut(s) 134
PciI ACATGT 1 cut(s) 229
PctI GAATGC 2 cut(s) 113, 694
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 3 cut(s) 36, 149, 319
PfoI TCCNGGA 1 cut(s) 568
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PscI ACATGT 1 cut(s) 229
Psp6I CCWGG 4 cut(s) 340, 362, 420, 568
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 4 cut(s) 340, 362, 420, 568
PspN4I GGNNCC 2 cut(s) 291, 480
PspPI GGNCC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 4 cut(s) 270, 324, 719, 749
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 2 cut(s) 405, 451
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 4 cut(s) 342, 364, 422, 570
SduI GDGCHC 3 cut(s) 229, 492, 790
SexAI ACCWGGT 1 cut(s) 340
SfaNI GCATC 3 cut(s) 499, 589, 701
SinI GGWCC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 3 cut(s) 491, 704, 789
SmoI CTYRAG 3 cut(s) 491, 704, 789
Sse9I AATT 5 cut(s) 84, 215, 236, 357, 524
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 1 cut(s) 385
SspMI CTAG 2 cut(s) 141, 759
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 4 cut(s) 340, 362, 420, 568
TaaI ACNGT 2 cut(s) 312, 634
TaiI ACGT 1 cut(s) 546
TaqI TCGA 1 cut(s) 211
TasI AATT 5 cut(s) 84, 215, 236, 357, 524
TfiI GAWTC 3 cut(s) 36, 149, 319
Tru1I TTAA 4 cut(s) 270, 324, 719, 749
Tru9I TTAA 4 cut(s) 270, 324, 719, 749
TscAI CASTG 3 cut(s) 454, 649, 790
TseFI GTSAC 4 cut(s) 62, 604, 644, 674
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 4 cut(s) 62, 604, 644, 674
TspDTI ATGAA 4 cut(s) 39, 92, 120, 791
TspRI CASTG 3 cut(s) 454, 649, 790
VpaK11BI GGWCC 1 cut(s) 289
XagI CCTNNNNNAGG 1 cut(s) 139
XapI RAATTY 1 cut(s) 236
XceI RCATGY 2 cut(s) 190, 233
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 2 cut(s) 141, 759
ZraI GACGTC 1 cut(s) 544
Zsp2I ATGCAT 2 cut(s) 462, 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.