AT4G33565

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016518
Physical Location & Seq
Forward (+)
16136749 .. 16138287
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33565.1

Sequence Viewer

Length: 1104 bp
ATGATAGATACCGTCAACCTACTTTTGTTGACCAAACTTGATTCTAAAGAAAGAAAGCAAAAGAGAGAGAACAAAAACGAAGACAACTCTCATCTTCTTTTCTCTTTCTTTTTCCTCTTTCTCCATTGCTTGTTGATTGATGATCTTGAAGCAAGGATCATGAGGTTCCTTCACAGATTTCTGTTGGAGGATATGCCCAAAGAAACCTTTTCGGACTCTCTCTGTAAAAATAATTGCATCCAAGAGTTGAAAACTCTAGGATACTGTTCATCCTATTGTCTTGACGAGTGTCCTTCCATCTGCGAGATCGTCGTAATTTCAGGTCTTTCACCACCTGCAGAGATCCACCACGACGATAACTTAAAGAGGATCTTGATCATCTCTGCTTCATCTATCATCACAACTCTGTTTCTCCTTACTTTACTTGTTCTCTGCTTCAAGTTTTACTATAGGAGGAGAAGATCAATAACAACATCAAGAAGATGGAGTATGGAAGAAGCTAGGAATTGGGATTTTGATGGACCAGCACCTGTTATTGTTGATCATCCGATTTGGCATATCAGAACCATAGGGTTGAATCCAACGGTTATAAGTTCCATCAAAGTTTGTCAGTATAGTAAAAAAGATGGTGTTGTGGAAGGAACTGATTGCTCCGTTTGTTTAAGCGAATTCGAAGAAGAAGAGACGCTTAGATTGTTACCAAAGTGTAAACATGCTTTTCATCTTTATTGTATTGATACTTGGCTTAGATCACACACCAATTGTCCGCTTTGTCGTGCTCCTATCGTTGAGGCCAACACAATGATTGATGATCATAGTGAGGGGCTAGAGGAGATAAGTGTGATGATTCCAGAAGAAAATGGAGATGATACCGATGAAGAAATCGAGGAAGAAAGAGATGGCTTTGTTAGTAATATTAGTAGAGATCATGGTGAGTCACAACAACAGCGAGTGAGACGATCAGTGTCGTTGGATTCGTTATCGGGTTTAAGGGTAAGTGAAGTTGTTGTGGGTAGAGAAAAGGAGAAGTTGAAGAGAGGCAATAATATTGGATCTGGGAGGTCAAGTTTATTGAAGAGATCTATCTCTTACAGTGGAAAGTAG

Protein Analysis

367

Amino Acids

42.18

Weight (kDa)

5.71

Isoelectric Point (pI)

61.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 216 - 259 8.6e-14 Ring finger domain
zf-RING_11 PF17123 216 - 245 2.3e-10 RING-like zinc finger
zf-rbx1 PF12678 217 - 259 1.5e-09 RING-H2 zinc finger domain
zf-C3HC4_2 PF13923 217 - 258 7.2e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 217 - 258 7e-07 Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11 PF12861 232 - 260 4e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016518)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33565
fragaria_vesca FvH4_2g23890
prunus_persica Prupe.8G066400_v2.0.a1 Prupe.8G066400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291501
rosa_laevigata RLG00000012111
rosa_multiflora Rmu_sc0024207.1_g000003 Rmu_sc0026626.1_g000002
rosa_rugosa Rorug06G0220000
rosa_samantha Rh6AG332100 Rh6BG339000 Rh6CG345200 Rh6DG332600
rosa_wichuraiana Rw6G028850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 590
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 343
AciI CCGC 1 cut(s) 767
AclWI GGATC 4 cut(s) 164, 337, 377, 1060
AcsI RAATTY 1 cut(s) 668
AgsI TTSAA 6 cut(s) 149, 250, 439, 577, 1033, 1075
AluBI AGCT 1 cut(s) 500
AluI AGCT 1 cut(s) 500
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 2 cut(s) 677, 949
AlwI GGATC 4 cut(s) 164, 337, 377, 1060
AlwNI CAGNNNCTG 1 cut(s) 530
AoxI GGCC 1 cut(s) 792
ApoI RAATTY 1 cut(s) 668
AspS9I GGNCC 1 cut(s) 521
AsuHPI GGTGA 2 cut(s) 321, 944
AsuII TTCGAA 1 cut(s) 672
AvaII GGWCC 1 cut(s) 521
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 781
BccI CCATC 6 cut(s) 305, 477, 512, 605, 620, 893
BciVI GTATCC 1 cut(s) 254
BclI TGATCA 3 cut(s) 375, 541, 811
BcoDI GTCTC 2 cut(s) 677, 949
BfaI CTAG 3 cut(s) 257, 501, 827
BfmI CTRYAG 2 cut(s) 336, 448
BfuAI ACCTGC 1 cut(s) 343
BfuI GTATCC 1 cut(s) 254
BglII AGATCT 1 cut(s) 1079
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 1 cut(s) 167
BmsI GCATC 1 cut(s) 246
BoxI GACNNNNGTC 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 672
BsaBI GATNNNNATC 1 cut(s) 374
BsaXI ACNNNNNCTCC 2 cut(s) 1051, 1081
Bse3DI GCAATG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 374
BseGI GGATG 3 cut(s) 237, 269, 544
BseJI GATNNNNATC 1 cut(s) 374
BseMI GCAATG 1 cut(s) 124
BseRI GAGGAG 2 cut(s) 469, 845
BshFI GGCC 1 cut(s) 794
BsiHKAI GWGCWC 1 cut(s) 781
BsmAI GTCTC 2 cut(s) 677, 949
BsmBI CGTCTC 2 cut(s) 677, 949
BsnI GGCC 1 cut(s) 794
Bsp119I TTCGAA 1 cut(s) 672
Bsp1286I GDGCHC 1 cut(s) 781
BspACI CCGC 1 cut(s) 767
BspANI GGCC 1 cut(s) 794
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 167
BspMAI CTGCAG 1 cut(s) 340
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 4 cut(s) 164, 337, 377, 1060
BspT104I TTCGAA 1 cut(s) 672
BsrDI GCAATG 1 cut(s) 124
Bst4CI ACNGT 4 cut(s) 13, 266, 586, 1094
Bst6I CTCTTC 3 cut(s) 675, 1028, 1070
BstBI TTCGAA 1 cut(s) 672
BstDEI CTNAG 2 cut(s) 689, 746
BstF5I GGATG 3 cut(s) 237, 269, 544
BstMAI GTCTC 2 cut(s) 677, 949
BstNSI RCATGY 1 cut(s) 716
BstPAI GACNNNNGTC 1 cut(s) 288
BstSFI CTRYAG 2 cut(s) 336, 448
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 4 cut(s) 342, 369, 1052, 1079
BstYI RGATCY 4 cut(s) 342, 369, 1052, 1079
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 794
BtsCI GGATG 3 cut(s) 237, 269, 544
BtsIMutI CAGTG 2 cut(s) 969, 1099
BveI ACCTGC 1 cut(s) 343
CaiI CAGNNNCTG 1 cut(s) 530
CciI TCATGA 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 521
CseI GACGC 1 cut(s) 694
CviAII CATG 3 cut(s) 160, 713, 929
CviJI RGCY 5 cut(s) 500, 745, 794, 826, 903
CviKI_1 RGCY 5 cut(s) 500, 745, 794, 826, 903
DdeI CTNAG 2 cut(s) 689, 746
Eam1104I CTCTTC 3 cut(s) 675, 1028, 1070
EarI CTCTTC 3 cut(s) 675, 1028, 1070
Eco47I GGWCC 1 cut(s) 521
EcoRI GAATTC 1 cut(s) 668
Esp3I CGTCTC 2 cut(s) 677, 949
FaeI CATG 3 cut(s) 163, 716, 932
FalI AAGNNNNNCTT 4 cut(s) 356, 388, 672, 704
FatI CATG 3 cut(s) 159, 712, 928
FbaI TGATCA 3 cut(s) 375, 541, 811
FokI GGATG 3 cut(s) 224, 256, 531
FspBI CTAG 3 cut(s) 257, 501, 827
HaeIII GGCC 1 cut(s) 794
HgaI GACGC 1 cut(s) 694
Hin1II CATG 3 cut(s) 163, 716, 932
HincII GTYRAC 2 cut(s) 16, 30
HindII GTYRAC 2 cut(s) 16, 30
HinfI GANTC 6 cut(s) 41, 215, 577, 847, 935, 974
HphI GGTGA 2 cut(s) 321, 944
Hpy166II GTNNAC 3 cut(s) 16, 30, 710
Hpy188I TCNGA 3 cut(s) 214, 549, 563
Hpy188III TCNNGA 6 cut(s) 146, 160, 281, 373, 477, 851
Hpy8I GTNNAC 3 cut(s) 16, 30, 710
Hpy99I CGWCG 2 cut(s) 314, 356
HpyAV CCTTC 3 cut(s) 179, 303, 632
HpyCH4III ACNGT 4 cut(s) 13, 266, 586, 1094
HpyCH4V TGCA 2 cut(s) 237, 338
HpyF3I CTNAG 2 cut(s) 689, 746
Hsp92II CATG 3 cut(s) 163, 716, 932
Ksp22I TGATCA 3 cut(s) 375, 541, 811
LmnI GCTCC 2 cut(s) 656, 784
LpnPI CCDG 6 cut(s) 306, 348, 537, 543, 864, 1041
LweI GCATC 1 cut(s) 246
MaeI CTAG 3 cut(s) 257, 501, 827
MaeIII GTNAC 2 cut(s) 696, 936
MfeI CAATTG 1 cut(s) 760
MflI RGATCY 4 cut(s) 342, 369, 1052, 1079
MhlI GDGCHC 1 cut(s) 781
MluCI AATT 5 cut(s) 232, 315, 505, 668, 760
MlyI GAGTC 2 cut(s) 209, 944
MmeI TCCRAC 3 cut(s) 165, 605, 951
MseI TTAA 3 cut(s) 362, 662, 989
MunI CAATTG 1 cut(s) 760
NlaIII CATG 3 cut(s) 163, 716, 932
NlaIV GGNNCC 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 936
NspI RCATGY 1 cut(s) 716
NspV TTCGAA 1 cut(s) 672
PagI TCATGA 1 cut(s) 159
PaqCI CACCTGC 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 974
PfeI GAWTC 4 cut(s) 41, 577, 847, 974
PleI GAGTC 2 cut(s) 209, 943
PpsI GAGTC 2 cut(s) 209, 943
PshAI GACNNNNGTC 1 cut(s) 288
PsiI TTATAA 1 cut(s) 590
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 1 cut(s) 521
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 4 cut(s) 342, 369, 1052, 1079
SaqAI TTAA 3 cut(s) 362, 662, 989
Sau96I GGNCC 1 cut(s) 521
SchI GAGTC 2 cut(s) 209, 944
SduI GDGCHC 1 cut(s) 781
SetI ASST 8 cut(s) 21, 167, 209, 325, 337, 502, 532, 1064
SfaNI GCATC 1 cut(s) 246
SfcI CTRYAG 2 cut(s) 336, 448
SfuI TTCGAA 1 cut(s) 672
SinI GGWCC 1 cut(s) 521
Sse9I AATT 5 cut(s) 232, 315, 505, 668, 760
SsiI CCGC 1 cut(s) 767
SspI AATATT 2 cut(s) 916, 1048
SspMI CTAG 3 cut(s) 257, 501, 827
TaaI ACNGT 4 cut(s) 13, 266, 586, 1094
TaqI TCGA 2 cut(s) 672, 885
TasI AATT 5 cut(s) 232, 315, 505, 668, 760
TfiI GAWTC 4 cut(s) 41, 577, 847, 974
Tru1I TTAA 3 cut(s) 362, 662, 989
Tru9I TTAA 3 cut(s) 362, 662, 989
TscAI CASTG 2 cut(s) 969, 1099
TseFI GTSAC 1 cut(s) 936
Tsp45I GTSAC 1 cut(s) 936
TspDTI ATGAA 4 cut(s) 258, 378, 710, 891
TspGWI ACGGA 1 cut(s) 643
TspRI CASTG 2 cut(s) 969, 1099
VpaK11BI GGWCC 1 cut(s) 521
XapI RAATTY 1 cut(s) 668
XceI RCATGY 1 cut(s) 716
XspI CTAG 3 cut(s) 257, 501, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.