Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016518

Physical Location & Seq

Genomic Coordinates Forward (+)

15343564 .. 15344658

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012111

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGATTAAAACACAGGAAGCTGATAAGCCAGTTCTGCAAAGCCTGCAGGGATATAGGTAAGTCTGACTGTTCAGAAGAATGTAAAACCACACCCCCCAATAAATCCACTGCCTTCATACCCGTCGCGTCGTCGTTGGCTGCAATCGCTTTGCTTGTTATTTGCGGCTATTTTCTCTATGTAAAGTACTACAAAAACAGAAGATCATCATCACAACCACAACAACTACAACATCTACCTCAGCAGGAGGAGGAGACTCTTCATCATCATGATCATCATGCTGATTTGTTTATTGATGAAGAGCATGGACCTGTGATTGACCACCCCATATGGTACATCCGCACCGTCGGACTGCAACAATCGCTTATCAGCTCCATCAGCGTGTGCCAGTACAAGAAAGGTGATGGCCTTATCGAAGGGACAGAGTGCGCTGTGTGCTTGAGTGAGTTCCAAGAAGATGAGACTTTGAGACTTCTGCCAAAGTGTGATCATGCTTTTCATATTCCCTGTATTGATACTTGGCTCACATCTCATACAAATTGCCCCTTGTGCCGTGCCCCTATTATCAGAACCGGCGCAACAGATGTCGCACCACCCGAGCCATTTGTTGCAGCTGATTCAAGTGAGCCAGCAGAGGAAGAAACACCGGTCGAGGTTCTAGAAAATACAGGTGAGTCCGGTACTATTACTGGAGGAGTTGAAGATGAAATTTGTGATGGGATTATTAGGACTACTGAAGCAGGGGAAGATGATATCATTAACAAACAGATCTGTATTAATGAGGAGGAGGTGGATGATGATGTGGAGGAGCCAAGAAGAAGATCGGTTTCCATGGATTCTGCATCAGCTTTGAAGATTAGTCTTGCGGTTTCTAATGTTGTTGAGGTGGATAAATCAAACCGGGGGATTGAAATTGTTGCCAAGAGAGTTGGGGGAGATCAGAAATTGTCAAGGCAGAAAGGTAGTTCTTCAAGAGGGGCATCTTTACAAAATGGAAAACGAACAATTCAGAAGTCGTCTTCCTGGAATGGCAAGTTCTCATTATGCAGGGACATCAACAACTGTGACTCTGTTGTTCCACTGCGAAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

365

Amino Acids

40.21

Weight (kDa)

5.24

Isoelectric Point (pI)

61.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	142 - 185	2.4e-13	Ring finger domain
zf-RING_11	PF17123	142 - 171	4.5e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	142 - 184	1.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	143 - 185	2.2e-08	RING-H2 zinc finger domain
zf-C3HC4	PF00097	143 - 184	5.4e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33565
fragaria_vesca	FvH4_2g23890
prunus_persica	Prupe.8G066400_v2.0.a1 Prupe.8G066400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291501
rosa_laevigata	RLG00000012111
rosa_multiflora	Rmu_sc0024207.1_g000003 Rmu_sc0026626.1_g000002
rosa_rugosa	Rorug06G0220000
rosa_samantha	Rh6AG332100 Rh6BG339000 Rh6CG345200 Rh6DG332600
rosa_wichuraiana	Rw6G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	128
AciI	CCGC	3 cut(s)	165, 340, 866
AcsI	RAATTY	1 cut(s)	708
AcuI	CTGAAG	1 cut(s)	756
AfaI	GTAC	4 cut(s)	188, 335, 392, 682
AgeI	ACCGGT	1 cut(s)	646
AgsI	TTSAA	5 cut(s)	621, 701, 853, 911, 972
AjnI	CCWGG	1 cut(s)	1022
AluBI	AGCT	5 cut(s)	22, 372, 614, 848, 1089
AluI	AGCT	5 cut(s)	22, 372, 614, 848, 1089
Alw26I	GTCTC	3 cut(s)	248, 455, 463
Ama87I	CYCGRG	1 cut(s)	596
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	2 cut(s)	140, 611
ApoI	RAATTY	1 cut(s)	708
AseI	ATTAAT	1 cut(s)	777
AsiGI	ACCGGT	1 cut(s)	646
AspLEI	GCGC	2 cut(s)	431, 578
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	1 cut(s)	902
AsuHPI	GGTGA	2 cut(s)	413, 683
AvaI	CYCGRG	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	1011
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	127, 623
BccI	CCATC	3 cut(s)	383, 398, 710
BceAI	ACGGC	1 cut(s)	537
BciT130I	CCWGG	1 cut(s)	1024
BclI	TGATCA	2 cut(s)	271, 487
BcnI	CCSGG	1 cut(s)	902
BcoDI	GTCTC	3 cut(s)	248, 455, 463
BfaI	CTAG	1 cut(s)	659
BfmI	CTRYAG	1 cut(s)	46
BglII	AGATCT	1 cut(s)	768
BisI	GCNGC	3 cut(s)	141, 166, 612
BlsI	GCNGC	3 cut(s)	142, 167, 613
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	2 cut(s)	902, 1024
Bme18I	GGWCC	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	810
BmrFI	CCNGG	2 cut(s)	902, 1024
BmsI	GCATC	2 cut(s)	851, 989
BpiI	GAAGAC	1 cut(s)	1011
BpmI	CTGGAG	1 cut(s)	711
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	460
BpuMI	CCSGG	1 cut(s)	902
BsaBI	GATNNNNATC	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	831, 901
BsaWI	WCCGGW	2 cut(s)	646, 677
Bse118I	RCCGGY	2 cut(s)	572, 646
Bse1I	ACTGG	3 cut(s)	31, 388, 694
Bse8I	GATNNNNATC	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	1024
BseDI	CCNNGG	2 cut(s)	831, 901
BseGI	GGATG	2 cut(s)	336, 799
BseJI	GATNNNNATC	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	3 cut(s)	31, 388, 694
BseRI	GAGGAG	6 cut(s)	263, 266, 708, 797, 800, 821
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	2 cut(s)	127, 623
Bsh1236I	CGCG	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	651
BshFI	GGCC	1 cut(s)	408
BshTI	ACCGGT	1 cut(s)	646
BsiEI	CGRYCG	1 cut(s)	651
BsiHKCI	CYCGRG	1 cut(s)	596
BsiSI	CCGG	4 cut(s)	573, 647, 678, 901
BslFI	GGGAC	2 cut(s)	433, 1064
BsmAI	GTCTC	3 cut(s)	248, 455, 463
BsmFI	GGGAC	2 cut(s)	433, 1064
BsnI	GGCC	1 cut(s)	408
BsoBI	CYCGRG	1 cut(s)	596
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	6 cut(s)	203, 271, 487, 768, 821, 937
Bsp19I	CCATGG	1 cut(s)	831
BspACI	CCGC	3 cut(s)	165, 340, 866
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	810
BspMAI	CTGCAG	1 cut(s)	50
BspQI	GCTCTTC	1 cut(s)	294
BsrFI	RCCGGY	2 cut(s)	572, 646
BsrI	ACTGG	3 cut(s)	31, 388, 694
BssAI	RCCGGY	2 cut(s)	572, 646
BssECI	CCNNGG	2 cut(s)	831, 901
BssMI	GATC	6 cut(s)	203, 271, 487, 768, 821, 937
BssT1I	CCWWGG	1 cut(s)	831
Bst2UI	CCWGG	1 cut(s)	1024
Bst4CI	ACNGT	3 cut(s)	71, 346, 1064
Bst6I	CTCTTC	2 cut(s)	264, 294
BstAPI	GCANNNNNTGC	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	46, 630
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	831
BstF5I	GGATG	2 cut(s)	336, 799
BstFNI	CGCG	1 cut(s)	128
BstHHI	GCGC	2 cut(s)	431, 578
BstKTI	GATC	6 cut(s)	206, 274, 490, 771, 824, 940
BstMAI	GTCTC	3 cut(s)	248, 455, 463
BstMBI	GATC	6 cut(s)	203, 271, 487, 768, 821, 937
BstMCI	CGRYCG	1 cut(s)	651
BstMWI	GCNNNNNNNGC	7 cut(s)	36, 45, 146, 361, 378, 435, 549
BstNI	CCWGG	1 cut(s)	1024
BstSCI	CCNGG	2 cut(s)	900, 1022
BstSFI	CTRYAG	1 cut(s)	46
BstSLI	GKGCMC	1 cut(s)	559
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	127, 623
BstV2I	GAAGAC	1 cut(s)	1011
BstX2I	RGATCY	1 cut(s)	768
BstYI	RGATCY	1 cut(s)	768
BsuRI	GGCC	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	831
BtsCI	GGATG	2 cut(s)	336, 799
BtsI	GCAGTG	2 cut(s)	108, 1079
BtsIMutI	CAGTG	2 cut(s)	108, 1079
Cac8I	GCNNGC	2 cut(s)	46, 630
CciI	TCATGA	1 cut(s)	268
CfoI	GCGC	2 cut(s)	431, 578
Cfr10I	RCCGGY	2 cut(s)	572, 646
Cfr13I	GGNCC	1 cut(s)	308
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	4 cut(s)	187, 334, 391, 681
CspAI	ACCGGT	1 cut(s)	646
CviAII	CATG	5 cut(s)	269, 278, 305, 491, 832
CviQI	GTAC	4 cut(s)	187, 334, 391, 681
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	6 cut(s)	205, 273, 489, 770, 823, 939
DpnII	GATC	6 cut(s)	203, 271, 487, 768, 821, 937
Eam1104I	CTCTTC	2 cut(s)	264, 294
EarI	CTCTTC	2 cut(s)	264, 294
Eco130I	CCWWGG	1 cut(s)	831
Eco32I	GATATC	1 cut(s)	754
Eco47I	GGWCC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	756
Eco88I	CYCGRG	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	1022
EcoRV	GATATC	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	831
ErhI	CCWWGG	1 cut(s)	831
FaeI	CATG	5 cut(s)	272, 281, 308, 494, 835
FaqI	GGGAC	2 cut(s)	433, 1064
FatI	CATG	5 cut(s)	268, 277, 304, 490, 831
FauNDI	CATATG	1 cut(s)	329
FbaI	TGATCA	2 cut(s)	271, 487
Fnu4HI	GCNGC	3 cut(s)	141, 166, 612
FokI	GGATG	2 cut(s)	323, 806
Fsp4HI	GCNGC	3 cut(s)	141, 166, 612
FspBI	CTAG	1 cut(s)	659
GlaI	GCGC	2 cut(s)	430, 577
GluI	GCNGC	3 cut(s)	141, 166, 612
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	4 cut(s)	573, 647, 678, 901
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	2 cut(s)	431, 578
Hin1II	CATG	5 cut(s)	272, 281, 308, 494, 835
Hin6I	GCGC	2 cut(s)	429, 576
HinP1I	GCGC	2 cut(s)	429, 576
HindIII	AAGCTT	1 cut(s)	1087
HinfI	GANTC	5 cut(s)	256, 617, 674, 836, 1067
HpaII	CCGG	4 cut(s)	573, 647, 678, 901
HphI	GGTGA	2 cut(s)	413, 683
Hpy188I	TCNGA	6 cut(s)	67, 76, 350, 569, 942, 1011
Hpy188III	TCNNGA	3 cut(s)	269, 659, 972
Hpy99I	CGWCG	4 cut(s)	128, 133, 136, 350
HpyAV	CCTTC	2 cut(s)	124, 410
HpyCH4III	ACNGT	3 cut(s)	71, 346, 1064
HpyCH4V	TGCA	7 cut(s)	39, 48, 143, 355, 611, 842, 1047
HpyF10VI	GCNNNNNNNGC	7 cut(s)	36, 45, 146, 361, 378, 435, 549
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	272, 281, 308, 494, 835
HspAI	GCGC	2 cut(s)	429, 576
Ksp22I	TGATCA	2 cut(s)	271, 487
Kzo9I	GATC	6 cut(s)	203, 271, 487, 768, 821, 937
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	2 cut(s)	377, 808
Lsp1109I	GCAGC	2 cut(s)	127, 623
LweI	GCATC	2 cut(s)	851, 989
MaeI	CTAG	1 cut(s)	659
MaeIII	GTNAC	1 cut(s)	1064
MalI	GATC	6 cut(s)	205, 273, 489, 770, 823, 939
MboI	GATC	6 cut(s)	203, 271, 487, 768, 821, 937
MflI	RGATCY	1 cut(s)	768
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	5 cut(s)	538, 708, 912, 944, 1005
MlyI	GAGTC	3 cut(s)	250, 683, 1061
MmeI	TCCRAC	1 cut(s)	328
MseI	TTAA	3 cut(s)	8, 759, 777
MslI	CAYNNNNRTG	2 cut(s)	267, 380
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	4 cut(s)	573, 647, 678, 901
MspR9I	CCNGG	2 cut(s)	902, 1024
MvaI	CCWGG	1 cut(s)	1024
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	7 cut(s)	36, 45, 146, 361, 378, 435, 549
NciI	CCSGG	1 cut(s)	902
NcoI	CCATGG	1 cut(s)	831
NdeI	CATATG	1 cut(s)	329
NdeII	GATC	6 cut(s)	203, 271, 487, 768, 821, 937
NlaIII	CATG	5 cut(s)	272, 281, 308, 494, 835
NlaIV	GGNNCC	1 cut(s)	810
NmuCI	GTSAC	1 cut(s)	1064
PagI	TCATGA	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	617, 836
PfoI	TCCNGGA	1 cut(s)	1022
PinAI	ACCGGT	1 cut(s)	646
PkrI	GCNGC	3 cut(s)	142, 167, 613
PleI	GAGTC	3 cut(s)	250, 682, 1061
PpsI	GAGTC	3 cut(s)	250, 682, 1061
PshBI	ATTAAT	1 cut(s)	777
Psp6I	CCWGG	1 cut(s)	1022
PspGI	CCWGG	1 cut(s)	1022
PspN4I	GGNNCC	1 cut(s)	810
PspPI	GGNCC	1 cut(s)	308
PstI	CTGCAG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	768
PvuII	CAGCTG	1 cut(s)	614
RsaI	GTAC	4 cut(s)	188, 335, 392, 682
RsaNI	GTAC	4 cut(s)	187, 334, 391, 681
RseI	CAYNNNNRTG	2 cut(s)	267, 380
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	8, 759, 777
SatI	GCNGC	3 cut(s)	141, 166, 612
Sau3AI	GATC	6 cut(s)	203, 271, 487, 768, 821, 937
Sau96I	GGNCC	1 cut(s)	308
SbfI	CCTGCAGG	1 cut(s)	50
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	3 cut(s)	250, 683, 1061
ScrFI	CCNGG	2 cut(s)	902, 1024
SdaI	CCTGCAGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	2 cut(s)	851, 989
SfcI	CTRYAG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	2 cut(s)	267, 380
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse8387I	CCTGCAGG	1 cut(s)	50
Sse9I	AATT	5 cut(s)	538, 708, 912, 944, 1005
SsiI	CCGC	3 cut(s)	165, 340, 866
SspMI	CTAG	1 cut(s)	659
StyD4I	CCNGG	2 cut(s)	900, 1022
StyI	CCWWGG	1 cut(s)	831
TaaI	ACNGT	3 cut(s)	71, 346, 1064
TaqI	TCGA	2 cut(s)	414, 651
TasI	AATT	5 cut(s)	538, 708, 912, 944, 1005
TatI	WGTACW	2 cut(s)	186, 390
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	617, 836
Tru1I	TTAA	3 cut(s)	8, 759, 777
Tru9I	TTAA	3 cut(s)	8, 759, 777
TscAI	CASTG	2 cut(s)	115, 1086
TseFI	GTSAC	1 cut(s)	1064
TseI	GCWGC	2 cut(s)	140, 611
Tsp45I	GTSAC	1 cut(s)	1064
TspDTI	ATGAA	5 cut(s)	106, 251, 312, 488, 720
TspRI	CASTG	2 cut(s)	115, 1086
VpaK11BI	GGWCC	1 cut(s)	308
VspI	ATTAAT	1 cut(s)	777
XapI	RAATTY	1 cut(s)	708
XbaI	TCTAGA	1 cut(s)	658
XspI	CTAG	1 cut(s)	659
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.