Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026626.1

Orthogroup ID

OG0016518

Physical Location & Seq

Genomic Coordinates Forward (+)

5450 .. 6508

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026626.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atggaatttaagcacagaaagctgagtagcgaaggctgtctaccaaaatgtaaaatcctccataaacccaagaccttcatagtcgtcgcatcgtcgttggctgcaatcgctttgcttgttatttgcggctattttctctatgtaaagtactacaaaaacagaagaagagcaccatcacaaccacaaccacaacaacatctacctcatcaggaggaggagactcttcatcatcatgatcatcatgctgagttgtttattgatgaagagcatggacctgtggttgaccaccccatatggtacatccgcaccgtcggtctgcaacaatcgcttatcagctccatcagtgtgtgccagtacaagaaaggtgatggccttatcgaagggacagagtgcgctgtgtgtttgagtgagttccaagaagatgagactttgagacttttgccaaagtgtgatcatgcttttcatattccctgtattgatacttggctcacatctcatacaaattgccccttgtgccgtgcccccattatcaaaaccggctcaacagatgtggcaccacccgagccatttgttgcagccgattcaagtgagccagcagaggaagaaacaccggtcgaggttctagaaaatacaggtgagtccagtactagtactggaggagttgaagatgaaatttgtgatgggattattaggactactgacgcacgagaagatgatatcattaacaaacagatctgtattaatgaggaggaggtggatgatgatgtggaggagccaagaagaagatcggtttccatggattctgcatcagctttgaagattagtcttgcggtttctaatgttgttgaggtggataaatcaaaccgggggattgaaattgttgccaagagagttgggggagatcagaaattgtcaagaaagaaaggtagttcttcaagaggggcatgtttacaaaatggaaaacaaacaattcagaagtcgtcttcctggaatggcaagttctcattatgcagggacatcaacaactgtgactccgttgttccactgcgaagcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

352

Amino Acids

39.15

Weight (kDa)

5.56

Isoelectric Point (pI)

61.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33565
fragaria_vesca	FvH4_2g23890
prunus_persica	Prupe.8G066400_v2.0.a1 Prupe.8G066400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291501
rosa_laevigata	RLG00000012111
rosa_multiflora	Rmu_sc0024207.1_g000003 Rmu_sc0026626.1_g000002
rosa_rugosa	Rorug06G0220000
rosa_samantha	Rh6AG332100 Rh6BG339000 Rh6CG345200 Rh6DG332600
rosa_wichuraiana	Rw6G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	553
AccI	GTMKAC	1 cut(s)	40
AciI	CCGC	3 cut(s)	126, 304, 830
AcsI	RAATTY	2 cut(s)	5, 672
AfaI	GTAC	5 cut(s)	149, 299, 356, 646, 652
AgeI	ACCGGT	1 cut(s)	610
AgsI	TTSAA	5 cut(s)	585, 665, 817, 875, 936
AhlI	ACTAGT	1 cut(s)	647
AjnI	CCWGG	1 cut(s)	986
AluBI	AGCT	4 cut(s)	22, 336, 812, 1053
AluI	AGCT	4 cut(s)	22, 336, 812, 1053
Alw21I	GWGCWC	1 cut(s)	172
Alw26I	GTCTC	3 cut(s)	212, 419, 427
Ama87I	CYCGRG	1 cut(s)	560
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	2 cut(s)	101, 575
ApoI	RAATTY	2 cut(s)	5, 672
AseI	ATTAAT	1 cut(s)	741
AsiGI	ACCGGT	1 cut(s)	610
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	866
AsuHPI	GGTGA	2 cut(s)	377, 647
AvaI	CYCGRG	1 cut(s)	560
AvaII	GGWCC	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	523
BanI	GGYRCC	1 cut(s)	553
BarI	GAAGNNNNNNTAC	2 cut(s)	24, 56
BauI	CACGAG	1 cut(s)	705
BbsI	GAAGAC	1 cut(s)	975
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	88, 587
BccI	CCATC	4 cut(s)	181, 347, 362, 674
BceAI	ACGGC	1 cut(s)	501
BciT130I	CCWGG	1 cut(s)	988
BclI	TGATCA	2 cut(s)	235, 451
BcnI	CCSGG	1 cut(s)	866
BcoDI	GTCTC	3 cut(s)	212, 419, 427
BcuI	ACTAGT	1 cut(s)	647
BfaI	CTAG	2 cut(s)	623, 648
BglII	AGATCT	1 cut(s)	732
BisI	GCNGC	3 cut(s)	102, 127, 576
BlsI	GCNGC	3 cut(s)	103, 128, 577
BmcAI	AGTACT	3 cut(s)	149, 646, 652
Bme1390I	CCNGG	2 cut(s)	866, 988
Bme18I	GGWCC	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	2 cut(s)	555, 774
BmrFI	CCNGG	2 cut(s)	866, 988
BmsI	GCATC	2 cut(s)	98, 815
BpiI	GAAGAC	1 cut(s)	975
BpmI	CTGGAG	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	866
BsaJI	CCNNGG	2 cut(s)	795, 865
BsaWI	WCCGGW	1 cut(s)	610
BsaXI	ACNNNNNCTCC	2 cut(s)	1016, 1046
Bse118I	RCCGGY	2 cut(s)	536, 610
Bse1I	ACTGG	3 cut(s)	352, 642, 658
BseBI	CCWGG	1 cut(s)	988
BseDI	CCNNGG	2 cut(s)	795, 865
BseGI	GGATG	2 cut(s)	300, 763
BseMII	CTCAG	2 cut(s)	14, 237
BseNI	ACTGG	3 cut(s)	352, 642, 658
BseRI	GAGGAG	6 cut(s)	227, 230, 672, 761, 764, 785
BseSI	GKGCMC	1 cut(s)	523
BseXI	GCAGC	2 cut(s)	88, 587
Bsh1285I	CGRYCG	1 cut(s)	615
BshFI	GGCC	1 cut(s)	372
BshNI	GGYRCC	1 cut(s)	553
BshTI	ACCGGT	1 cut(s)	610
BsiEI	CGRYCG	1 cut(s)	615
BsiHKAI	GWGCWC	1 cut(s)	172
BsiHKCI	CYCGRG	1 cut(s)	560
BsiSI	CCGG	3 cut(s)	537, 611, 865
BslFI	GGGAC	2 cut(s)	397, 1028
BsmAI	GTCTC	3 cut(s)	212, 419, 427
BsmFI	GGGAC	2 cut(s)	397, 1028
BsnI	GGCC	1 cut(s)	372
BsoBI	CYCGRG	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	172, 523
Bsp143I	GATC	5 cut(s)	235, 451, 732, 785, 901
Bsp19I	CCATGG	1 cut(s)	795
BspACI	CCGC	3 cut(s)	126, 304, 830
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	2 cut(s)	15, 238
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	555, 774
BspQI	GCTCTTC	2 cut(s)	160, 258
BspT107I	GGYRCC	1 cut(s)	553
BsrFI	RCCGGY	2 cut(s)	536, 610
BsrI	ACTGG	3 cut(s)	352, 642, 658
BssAI	RCCGGY	2 cut(s)	536, 610
BssECI	CCNNGG	2 cut(s)	795, 865
BssMI	GATC	5 cut(s)	235, 451, 732, 785, 901
BssSI	CACGAG	1 cut(s)	705
BssT1I	CCWWGG	1 cut(s)	795
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	1 cut(s)	988
Bst4CI	ACNGT	2 cut(s)	310, 1028
Bst6I	CTCTTC	3 cut(s)	160, 228, 258
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	2 cut(s)	23, 246
BstDSI	CCRYGG	1 cut(s)	795
BstF5I	GGATG	2 cut(s)	300, 763
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	5 cut(s)	238, 454, 735, 788, 904
BstMAI	GTCTC	3 cut(s)	212, 419, 427
BstMBI	GATC	5 cut(s)	235, 451, 732, 785, 901
BstMCI	CGRYCG	1 cut(s)	615
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 107, 325, 513
BstNI	CCWGG	1 cut(s)	988
BstNSI	RCATGY	1 cut(s)	948
BstSCI	CCNGG	2 cut(s)	864, 986
BstSLI	GKGCMC	1 cut(s)	523
BstV1I	GCAGC	2 cut(s)	88, 587
BstV2I	GAAGAC	1 cut(s)	975
BstX2I	RGATCY	1 cut(s)	732
BstYI	RGATCY	1 cut(s)	732
BsuRI	GGCC	1 cut(s)	372
BtgI	CCRYGG	1 cut(s)	795
BtsCI	GGATG	2 cut(s)	300, 763
BtsI	GCAGTG	1 cut(s)	1043
BtsIMutI	CAGTG	2 cut(s)	349, 1043
Cac8I	GCNNGC	1 cut(s)	594
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	1 cut(s)	395
Cfr10I	RCCGGY	2 cut(s)	536, 610
Cfr13I	GGNCC	1 cut(s)	272
CseI	GACGC	1 cut(s)	710
Csp6I	GTAC	5 cut(s)	148, 298, 355, 645, 651
CspAI	ACCGGT	1 cut(s)	610
CspCI	CAANNNNNGTGG	2 cut(s)	531, 566
CviAII	CATG	6 cut(s)	233, 242, 269, 455, 796, 945
CviQI	GTAC	5 cut(s)	148, 298, 355, 645, 651
DdeI	CTNAG	2 cut(s)	23, 246
DpnI	GATC	5 cut(s)	237, 453, 734, 787, 903
DpnII	GATC	5 cut(s)	235, 451, 732, 785, 901
Eam1104I	CTCTTC	3 cut(s)	160, 228, 258
EarI	CTCTTC	3 cut(s)	160, 228, 258
Eco130I	CCWWGG	1 cut(s)	795
Eco32I	GATATC	1 cut(s)	718
Eco47I	GGWCC	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	986
EcoRV	GATATC	1 cut(s)	718
EcoT14I	CCWWGG	1 cut(s)	795
ErhI	CCWWGG	1 cut(s)	795
FaeI	CATG	6 cut(s)	236, 245, 272, 458, 799, 948
FaqI	GGGAC	2 cut(s)	397, 1028
FatI	CATG	6 cut(s)	232, 241, 268, 454, 795, 944
FauNDI	CATATG	1 cut(s)	293
FbaI	TGATCA	2 cut(s)	235, 451
FblI	GTMKAC	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	102, 127, 576
FokI	GGATG	2 cut(s)	287, 770
Fsp4HI	GCNGC	3 cut(s)	102, 127, 576
FspBI	CTAG	2 cut(s)	623, 648
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	3 cut(s)	102, 127, 576
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	1 cut(s)	372
HapII	CCGG	3 cut(s)	537, 611, 865
HgaI	GACGC	1 cut(s)	710
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	6 cut(s)	236, 245, 272, 458, 799, 948
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	1051
HinfI	GANTC	5 cut(s)	220, 581, 638, 800, 1031
HpaII	CCGG	3 cut(s)	537, 611, 865
HphI	GGTGA	2 cut(s)	377, 647
Hpy166II	GTNNAC	3 cut(s)	41, 283, 950
Hpy188I	TCNGA	2 cut(s)	906, 975
Hpy188III	TCNNGA	5 cut(s)	209, 233, 623, 915, 936
Hpy8I	GTNNAC	3 cut(s)	41, 283, 950
Hpy99I	CGWCG	3 cut(s)	89, 97, 314
HpyAV	CCTTC	3 cut(s)	26, 85, 374
HpyCH4III	ACNGT	2 cut(s)	310, 1028
HpyCH4V	TGCA	5 cut(s)	104, 319, 575, 806, 1011
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 107, 325, 513
HpyF3I	CTNAG	2 cut(s)	23, 246
Hsp92II	CATG	6 cut(s)	236, 245, 272, 458, 799, 948
HspAI	GCGC	1 cut(s)	393
Ksp22I	TGATCA	2 cut(s)	235, 451
Kzo9I	GATC	5 cut(s)	235, 451, 732, 785, 901
LguI	GCTCTTC	2 cut(s)	160, 258
LmnI	GCTCC	2 cut(s)	341, 772
Lsp1109I	GCAGC	2 cut(s)	88, 587
LweI	GCATC	2 cut(s)	98, 815
MaeI	CTAG	2 cut(s)	623, 648
MaeIII	GTNAC	1 cut(s)	1028
MalI	GATC	5 cut(s)	237, 453, 734, 787, 903
MboI	GATC	5 cut(s)	235, 451, 732, 785, 901
MflI	RGATCY	1 cut(s)	732
MhlI	GDGCHC	2 cut(s)	172, 523
MluCI	AATT	6 cut(s)	5, 502, 672, 876, 908, 969
MlyI	GAGTC	3 cut(s)	214, 647, 1025
MseI	TTAA	3 cut(s)	9, 723, 741
MslI	CAYNNNNRTG	2 cut(s)	231, 344
MspI	CCGG	3 cut(s)	537, 611, 865
MspR9I	CCNGG	2 cut(s)	866, 988
MvaI	CCWGG	1 cut(s)	988
MwoI	GCNNNNNNNGC	4 cut(s)	19, 107, 325, 513
NciI	CCSGG	1 cut(s)	866
NcoI	CCATGG	1 cut(s)	795
NdeI	CATATG	1 cut(s)	293
NdeII	GATC	5 cut(s)	235, 451, 732, 785, 901
NlaIII	CATG	6 cut(s)	236, 245, 272, 458, 799, 948
NlaIV	GGNNCC	2 cut(s)	555, 774
NmuCI	GTSAC	1 cut(s)	1028
NspI	RCATGY	1 cut(s)	948
PagI	TCATGA	1 cut(s)	232
PciSI	GCTCTTC	2 cut(s)	160, 258
PfeI	GAWTC	2 cut(s)	581, 800
PfoI	TCCNGGA	1 cut(s)	986
PinAI	ACCGGT	1 cut(s)	610
PkrI	GCNGC	3 cut(s)	103, 128, 577
PleI	GAGTC	3 cut(s)	214, 646, 1025
PpsI	GAGTC	3 cut(s)	214, 646, 1025
PshBI	ATTAAT	1 cut(s)	741
Psp6I	CCWGG	1 cut(s)	986
PspGI	CCWGG	1 cut(s)	986
PspN4I	GGNNCC	2 cut(s)	555, 774
PspPI	GGNCC	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	732
RsaI	GTAC	5 cut(s)	149, 299, 356, 646, 652
RsaNI	GTAC	5 cut(s)	148, 298, 355, 645, 651
RseI	CAYNNNNRTG	2 cut(s)	231, 344
SapI	GCTCTTC	2 cut(s)	160, 258
SaqAI	TTAA	3 cut(s)	9, 723, 741
SatI	GCNGC	3 cut(s)	102, 127, 576
Sau3AI	GATC	5 cut(s)	235, 451, 732, 785, 901
Sau96I	GGNCC	1 cut(s)	272
ScaI	AGTACT	3 cut(s)	149, 646, 652
SchI	GAGTC	3 cut(s)	214, 647, 1025
ScrFI	CCNGG	2 cut(s)	866, 988
SduI	GDGCHC	2 cut(s)	172, 523
SfaNI	GCATC	2 cut(s)	98, 815
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	231, 344
SpeI	ACTAGT	1 cut(s)	647
Sse9I	AATT	6 cut(s)	5, 502, 672, 876, 908, 969
SsiI	CCGC	3 cut(s)	126, 304, 830
SspMI	CTAG	2 cut(s)	623, 648
StyD4I	CCNGG	2 cut(s)	864, 986
StyI	CCWWGG	1 cut(s)	795
TaaI	ACNGT	2 cut(s)	310, 1028
TaqI	TCGA	2 cut(s)	378, 615
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	6 cut(s)	5, 502, 672, 876, 908, 969
TatI	WGTACW	4 cut(s)	147, 354, 644, 650
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	581, 800
Tru1I	TTAA	3 cut(s)	9, 723, 741
Tru9I	TTAA	3 cut(s)	9, 723, 741
TscAI	CASTG	2 cut(s)	349, 1050
TseFI	GTSAC	1 cut(s)	1028
TseI	GCWGC	2 cut(s)	101, 575
Tsp45I	GTSAC	1 cut(s)	1028
TspDTI	ATGAA	5 cut(s)	67, 215, 276, 452, 684
TspGWI	ACGGA	1 cut(s)	1024
TspRI	CASTG	2 cut(s)	349, 1050
VpaK11BI	GGWCC	1 cut(s)	272
VspI	ATTAAT	1 cut(s)	741
XapI	RAATTY	2 cut(s)	5, 672
XbaI	TCTAGA	1 cut(s)	622
XceI	RCATGY	1 cut(s)	948
XmiI	GTMKAC	1 cut(s)	40
XspI	CTAG	2 cut(s)	623, 648
ZrmI	AGTACT	3 cut(s)	149, 646, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.