Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016518

Physical Location & Seq

Genomic Coordinates Reverse (-)

52910338 .. 52911426

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G028850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAATTTAAGCACAGAAAGCTGAGTGACGAAGACTGCGATGCTTGCATGAAGCTTGGTCTTAGGGACTGTCGATCAGTATGTAAAATCCCCCATAAACCCAAGATCTTCATAGTCGTCGCATCGTCGTTGGCTGCAATCGCTTTGCTTGTTATTTGCGGCTATTTTCTCTATGTAAAGTACTACAAAAACAGAAGAAGATCACCATCACAACCACAACCACAACAACATCTACCTCATCAGGAGGAGGAGACTCTTCATCATCATGATCATCATGCTGAGTTGTTTATTGATGAAGAGCATGGACCTGTGGTTGACCACCCCATATGGTACATCCGCACCGTCGGTCTGCAACAATCGCTTATCAGCTCCATCAGTGTGTGCCAGTACAAGAAAGGTGATGGCCTTATCGAAGGGACAGAGTGCGCTGTGTGTTTGAGTGAGTTCCAAGAAGATGAGACTTTGAGACTTTTGCCAAAGTGTGATCATGCTTTTCATATTCCCTGTATTGATACTTGGCTCACATCTCATACAAATTGCCCCTTGTGCCGTGCCCCCATTATCAAAACCGGCTCAACAGATGTGGCACCACCCGAGCCATTTGTTGCAGCTGATTCAAGTGAGCCAGCAGAGGAAGAAACACCGGTCGAGGTTCTAGAAAATACAGGTGAGTCCAGTACTAATACTGGAGGAGTTGAAGATGAAATTTGTGATGGGATTATTAGGACTACTGAAGCAGGGGAAGATGATATCATTAACAAACAGATCTGTATTAATGAGGAGGGGTGGATAAATCAAACCGGGGGATTGAAATTCTTGCCAAGAGAGTTGGGGGAGATCAGAAATTGTCAAGGCAGAAAGGTAGTTCTTCAAGAGGGGCATCTTTACAAAATGGAAAACAAACAATTCAGAAGTCGTCTTCCTGGAATGGCAAGTTCTCATTATGCAGGGACATCAAACTGTGACTCTGTTGTTCCACTGAGAAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

330

Amino Acids

37.06

Weight (kDa)

5.44

Isoelectric Point (pI)

64.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	141 - 184	2.1e-13	Ring finger domain
zf-RING_11	PF17123	141 - 170	3.9e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	141 - 183	1.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	142 - 184	2e-08	RING-H2 zinc finger domain
zf-C3HC4	PF00097	142 - 183	4.7e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33565
fragaria_vesca	FvH4_2g23890
prunus_persica	Prupe.8G066400_v2.0.a1 Prupe.8G066400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291501
rosa_laevigata	RLG00000012111
rosa_multiflora	Rmu_sc0024207.1_g000003 Rmu_sc0026626.1_g000002
rosa_rugosa	Rorug06G0220000
rosa_samantha	Rh6AG332100 Rh6BG339000 Rh6CG345200 Rh6DG332600
rosa_wichuraiana	Rw6G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	586
AciI	CCGC	2 cut(s)	159, 337
AcsI	RAATTY	3 cut(s)	5, 705, 812
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	4 cut(s)	182, 332, 389, 679
AgeI	ACCGGT	1 cut(s)	643
AgsI	TTSAA	4 cut(s)	618, 698, 811, 872
AjnI	CCWGG	1 cut(s)	922
AluBI	AGCT	5 cut(s)	22, 55, 369, 611, 987
AluI	AGCT	5 cut(s)	22, 55, 369, 611, 987
Alw26I	GTCTC	3 cut(s)	245, 452, 460
Ama87I	CYCGRG	1 cut(s)	593
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	2 cut(s)	134, 608
ApoI	RAATTY	3 cut(s)	5, 705, 812
AseI	ATTAAT	1 cut(s)	774
AsiGI	ACCGGT	1 cut(s)	643
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	305
AsuC2I	CCSGG	1 cut(s)	802
AsuHPI	GGTGA	3 cut(s)	195, 410, 680
AvaI	CYCGRG	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	556
BanI	GGYRCC	1 cut(s)	586
BbsI	GAAGAC	2 cut(s)	39, 911
BbvI	GCAGC	2 cut(s)	121, 620
BccI	CCATC	4 cut(s)	214, 380, 395, 707
BceAI	ACGGC	1 cut(s)	534
BciT130I	CCWGG	1 cut(s)	924
BclI	TGATCA	2 cut(s)	268, 484
BcnI	CCSGG	1 cut(s)	802
BcoDI	GTCTC	3 cut(s)	245, 452, 460
BfaI	CTAG	1 cut(s)	656
BglII	AGATCT	2 cut(s)	105, 765
BisI	GCNGC	3 cut(s)	135, 160, 609
BlsI	GCNGC	3 cut(s)	136, 161, 610
BmcAI	AGTACT	2 cut(s)	182, 679
Bme1390I	CCNGG	2 cut(s)	802, 924
Bme18I	GGWCC	1 cut(s)	305
BmeT110I	CYCGRG	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	588
BmrFI	CCNGG	2 cut(s)	802, 924
BmsI	GCATC	3 cut(s)	31, 131, 889
BpiI	GAAGAC	2 cut(s)	39, 911
BpmI	CTGGAG	1 cut(s)	708
BpuMI	CCSGG	1 cut(s)	802
BsaBI	GATNNNNATC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	801
BsaWI	WCCGGW	1 cut(s)	643
Bse118I	RCCGGY	2 cut(s)	569, 643
Bse1I	ACTGG	3 cut(s)	385, 675, 691
Bse8I	GATNNNNATC	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	924
BseDI	CCNNGG	1 cut(s)	801
BseGI	GGATG	1 cut(s)	333
BseJI	GATNNNNATC	1 cut(s)	205
BseMII	CTCAG	3 cut(s)	14, 270, 971
BseNI	ACTGG	3 cut(s)	385, 675, 691
BseRI	GAGGAG	4 cut(s)	260, 263, 705, 794
BseSI	GKGCMC	1 cut(s)	556
BseXI	GCAGC	2 cut(s)	121, 620
Bsh1285I	CGRYCG	1 cut(s)	648
BshFI	GGCC	1 cut(s)	405
BshNI	GGYRCC	1 cut(s)	586
BshTI	ACCGGT	1 cut(s)	643
BsiEI	CGRYCG	1 cut(s)	648
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	3 cut(s)	570, 644, 801
BslFI	GGGAC	3 cut(s)	80, 430, 964
BsmAI	GTCTC	3 cut(s)	245, 452, 460
BsmFI	GGGAC	3 cut(s)	80, 430, 964
BsnI	GGCC	1 cut(s)	405
BsoBI	CYCGRG	1 cut(s)	593
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	7 cut(s)	74, 105, 200, 268, 484, 765, 837
BspACI	CCGC	2 cut(s)	159, 337
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	3 cut(s)	15, 271, 972
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	588
BspQI	GCTCTTC	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	586
BsrFI	RCCGGY	2 cut(s)	569, 643
BsrI	ACTGG	3 cut(s)	385, 675, 691
BssAI	RCCGGY	2 cut(s)	569, 643
BssECI	CCNNGG	1 cut(s)	801
BssMI	GATC	7 cut(s)	74, 105, 200, 268, 484, 765, 837
Bst2UI	CCWGG	1 cut(s)	924
Bst4CI	ACNGT	3 cut(s)	71, 343, 962
Bst6I	CTCTTC	2 cut(s)	261, 291
BstC8I	GCNNGC	2 cut(s)	46, 627
BstDEI	CTNAG	4 cut(s)	23, 62, 279, 980
BstF5I	GGATG	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	7 cut(s)	77, 108, 203, 271, 487, 768, 840
BstMAI	GTCTC	3 cut(s)	245, 452, 460
BstMBI	GATC	7 cut(s)	74, 105, 200, 268, 484, 765, 837
BstMCI	CGRYCG	1 cut(s)	648
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 45, 140, 358, 546
BstNI	CCWGG	1 cut(s)	924
BstSCI	CCNGG	2 cut(s)	800, 922
BstSLI	GKGCMC	1 cut(s)	556
BstV1I	GCAGC	2 cut(s)	121, 620
BstV2I	GAAGAC	2 cut(s)	39, 911
BstX2I	RGATCY	2 cut(s)	105, 765
BstYI	RGATCY	2 cut(s)	105, 765
BsuRI	GGCC	1 cut(s)	405
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	382, 977
Cac8I	GCNNGC	2 cut(s)	46, 627
CciI	TCATGA	1 cut(s)	265
CfoI	GCGC	1 cut(s)	428
Cfr10I	RCCGGY	2 cut(s)	569, 643
Cfr13I	GGNCC	1 cut(s)	305
Csp6I	GTAC	4 cut(s)	181, 331, 388, 678
CspAI	ACCGGT	1 cut(s)	643
CspCI	CAANNNNNGTGG	2 cut(s)	564, 599
CviAII	CATG	5 cut(s)	49, 266, 275, 302, 488
CviQI	GTAC	4 cut(s)	181, 331, 388, 678
DdeI	CTNAG	4 cut(s)	23, 62, 279, 980
DpnI	GATC	7 cut(s)	76, 107, 202, 270, 486, 767, 839
DpnII	GATC	7 cut(s)	74, 105, 200, 268, 484, 765, 837
Eam1104I	CTCTTC	2 cut(s)	261, 291
EarI	CTCTTC	2 cut(s)	261, 291
Eco32I	GATATC	1 cut(s)	751
Eco47I	GGWCC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	753
Eco88I	CYCGRG	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	922
EcoRV	GATATC	1 cut(s)	751
FaeI	CATG	5 cut(s)	52, 269, 278, 305, 491
FaqI	GGGAC	3 cut(s)	80, 430, 964
FatI	CATG	5 cut(s)	48, 265, 274, 301, 487
FauNDI	CATATG	1 cut(s)	326
FbaI	TGATCA	2 cut(s)	268, 484
Fnu4HI	GCNGC	3 cut(s)	135, 160, 609
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	3 cut(s)	135, 160, 609
FspBI	CTAG	1 cut(s)	656
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	3 cut(s)	135, 160, 609
GsuI	CTGGAG	1 cut(s)	708
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	3 cut(s)	570, 644, 801
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	5 cut(s)	52, 269, 278, 305, 491
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	2 cut(s)	53, 985
HinfI	GANTC	4 cut(s)	253, 614, 671, 965
HpaII	CCGG	3 cut(s)	570, 644, 801
HphI	GGTGA	3 cut(s)	195, 410, 680
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	2 cut(s)	842, 911
Hpy188III	TCNNGA	4 cut(s)	242, 266, 656, 872
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	3 cut(s)	122, 130, 347
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	3 cut(s)	71, 343, 962
HpyCH4V	TGCA	5 cut(s)	48, 137, 352, 608, 947
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 45, 140, 358, 546
HpyF3I	CTNAG	4 cut(s)	23, 62, 279, 980
Hsp92II	CATG	5 cut(s)	52, 269, 278, 305, 491
HspAI	GCGC	1 cut(s)	426
Ksp22I	TGATCA	2 cut(s)	268, 484
Kzo9I	GATC	7 cut(s)	74, 105, 200, 268, 484, 765, 837
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	2 cut(s)	121, 620
LweI	GCATC	3 cut(s)	31, 131, 889
MaeI	CTAG	1 cut(s)	656
MaeIII	GTNAC	2 cut(s)	26, 962
MalI	GATC	7 cut(s)	76, 107, 202, 270, 486, 767, 839
MboI	GATC	7 cut(s)	74, 105, 200, 268, 484, 765, 837
MflI	RGATCY	2 cut(s)	105, 765
MhlI	GDGCHC	1 cut(s)	556
MluCI	AATT	6 cut(s)	5, 535, 705, 812, 844, 905
MlyI	GAGTC	3 cut(s)	247, 680, 959
MnlI	CCTC	9 cut(s)	238, 241, 246, 625, 643, 683, 772, 775, 868
MseI	TTAA	3 cut(s)	9, 756, 774
MslI	CAYNNNNRTG	2 cut(s)	264, 377
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	3 cut(s)	570, 644, 801
MspR9I	CCNGG	2 cut(s)	802, 924
MvaI	CCWGG	1 cut(s)	924
MwoI	GCNNNNNNNGC	5 cut(s)	19, 45, 140, 358, 546
NciI	CCSGG	1 cut(s)	802
NdeI	CATATG	1 cut(s)	326
NdeII	GATC	7 cut(s)	74, 105, 200, 268, 484, 765, 837
NlaIII	CATG	5 cut(s)	52, 269, 278, 305, 491
NlaIV	GGNNCC	1 cut(s)	588
NmuCI	GTSAC	2 cut(s)	26, 962
PagI	TCATGA	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	614
PfoI	TCCNGGA	1 cut(s)	922
PinAI	ACCGGT	1 cut(s)	643
PkrI	GCNGC	3 cut(s)	136, 161, 610
PleI	GAGTC	3 cut(s)	247, 679, 959
PpsI	GAGTC	3 cut(s)	247, 679, 959
PshBI	ATTAAT	1 cut(s)	774
Psp6I	CCWGG	1 cut(s)	922
PspGI	CCWGG	1 cut(s)	922
PspN4I	GGNNCC	1 cut(s)	588
PspPI	GGNCC	1 cut(s)	305
PsuI	RGATCY	2 cut(s)	105, 765
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	4 cut(s)	182, 332, 389, 679
RsaNI	GTAC	4 cut(s)	181, 331, 388, 678
RseI	CAYNNNNRTG	2 cut(s)	264, 377
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	9, 756, 774
SatI	GCNGC	3 cut(s)	135, 160, 609
Sau3AI	GATC	7 cut(s)	74, 105, 200, 268, 484, 765, 837
Sau96I	GGNCC	1 cut(s)	305
ScaI	AGTACT	2 cut(s)	182, 679
SchI	GAGTC	3 cut(s)	247, 680, 959
ScrFI	CCNGG	2 cut(s)	802, 924
SduI	GDGCHC	1 cut(s)	556
SfaNI	GCATC	3 cut(s)	31, 131, 889
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	2 cut(s)	264, 377
Sse9I	AATT	6 cut(s)	5, 535, 705, 812, 844, 905
SsiI	CCGC	2 cut(s)	159, 337
SspMI	CTAG	1 cut(s)	656
StyD4I	CCNGG	2 cut(s)	800, 922
TaaI	ACNGT	3 cut(s)	71, 343, 962
TaqI	TCGA	3 cut(s)	73, 411, 648
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	6 cut(s)	5, 535, 705, 812, 844, 905
TatI	WGTACW	3 cut(s)	180, 387, 677
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	614
Tru1I	TTAA	3 cut(s)	9, 756, 774
Tru9I	TTAA	3 cut(s)	9, 756, 774
TscAI	CASTG	2 cut(s)	382, 984
TseFI	GTSAC	2 cut(s)	26, 962
TseI	GCWGC	2 cut(s)	134, 608
Tsp45I	GTSAC	2 cut(s)	26, 962
TspDTI	ATGAA	6 cut(s)	65, 100, 248, 309, 485, 717
TspRI	CASTG	2 cut(s)	382, 984
VpaK11BI	GGWCC	1 cut(s)	305
VspI	ATTAAT	1 cut(s)	774
XapI	RAATTY	3 cut(s)	5, 705, 812
XbaI	TCTAGA	1 cut(s)	655
XspI	CTAG	1 cut(s)	656
ZrmI	AGTACT	2 cut(s)	182, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.