Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0016518

Physical Location & Seq

Genomic Coordinates Forward (+)

9821247 .. 9824355

Gene Structure 3109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G066400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAATTCCACCACAGAAAGCTGTTAACAGAACCAAAGAACTTTTCAACGGTCTGCCAATCATTCTGTGATTCAGAAAAAAATGATTCTGGATTTTGTTTGCCATCATGTTTGACTTTATGTCCTAACATCTGCCACCATTCTATCATATCTGGATATGATGAAACAAAAAAATCCAATAATTCCTACACCTTCGTGGCTGTTGGATCGTCTTTGATTGTAGCCACTTTTCTTCTTGTTGGTTTGTATGTTTTCTATGTAAAGTACTATTCAACCAGGAGAAGATCACAACCACAACAGCAACCTTTATCAGAGGAGACCCATGATGACTATATAGATGAAGATCATGGGCCGGTGCTTGACCACCCGATCTGGTACATCAACACCATCGGTCTCCAGCAATCGATTATCAGTTCGATCACGGTATGTCAGTACAAGAGAGGTAATGGTCTTGTTGAAGGTACAGAGTGTTCTGTGTGCTTGAGTGAGTTTCAAGAAGATGAGACTTTGAGACTTCTGCCTAAATGCAATCATGCTTTTCATGTTCCTTGTATTGATACATGGCTTAGATCCCATACCAACTGCCCCATGTGTCGGGCACCGATCGTCAAACCCTTGGCAACCCCTGCACCAGAACCAAATCTTGCTGTCAGTTCAATTCCAGAAGAAGAAACCCAGGTGGAAATTTCGGAAAATATTGGTGACTCTAGTGAAGAAATGGGAGAGGAAATTTGTGAGATTAGAATTGAAACAGAGGAAAACAGAGAGGTGATTGGAAAGGAGAGAGATGAAATCCCAATTGAAGAGGTGAATGGACTAGTGGAGCCAAGAAGGTCGGTTTCCATGGATTGTTTATCAGCTTCAAAGATCAGTCTGGAGCTTTCTAATCTCCCTGCAGTGGAATCTGAAAGGAATTCAAATACCAAATTGGTTGCGGTAAATAAATTAAACAGGGAAATTGTTCCCAGGAAGACTGGTGGAAATCAGAAGTTGCAAAGACAGAAGGGCAGTTCTTCAAAAGGGAGGTCTCTGCAAAATGTTCCTCTGACTATGAAGAGGTCATCTTCCTGCAATGGGAAAGTCTTGTTCTGCAGGGATGTTCAAAACAGTGAATCAGTTTCCCAATTGAGGAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

380

Amino Acids

42.57

Weight (kDa)

5.5

Isoelectric Point (pI)

69.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33565
fragaria_vesca	FvH4_2g23890
prunus_persica	Prupe.8G066400_v2.0.a1 Prupe.8G066400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291501
rosa_laevigata	RLG00000012111
rosa_multiflora	Rmu_sc0024207.1_g000003 Rmu_sc0026626.1_g000002
rosa_rugosa	Rorug06G0220000
rosa_samantha	Rh6AG332100 Rh6BG339000 Rh6CG345200 Rh6DG332600
rosa_wichuraiana	Rw6G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	598
AciI	CCGC	1 cut(s)	935
AclWI	GGATC	2 cut(s)	214, 564
AcsI	RAATTY	4 cut(s)	5, 684, 729, 913
AfaI	GTAC	4 cut(s)	266, 377, 434, 463
AfiI	CCNNNNNNNGG	4 cut(s)	594, 898, 1074, 1128
AhdI	GACNNNNNGTC	1 cut(s)	120
AhlI	ACTAGT	1 cut(s)	817
AjnI	CCWGG	3 cut(s)	275, 675, 965
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	4 cut(s)	22, 860, 880, 1134
AluI	AGCT	4 cut(s)	22, 860, 880, 1134
Alw26I	GTCTC	5 cut(s)	311, 398, 497, 505, 1032
AlwI	GGATC	2 cut(s)	214, 564
AoxI	GGCC	1 cut(s)	350
ApoI	RAATTY	4 cut(s)	5, 684, 729, 913
ArsI	GACNNNNNNTTYG	2 cut(s)	1010, 1042
Asp700I	GAANNNNTTC	1 cut(s)	960
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	3 cut(s)	713, 781, 820
BaeGI	GKGCMC	1 cut(s)	601
BanI	GGYRCC	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	977
BccI	CCATC	2 cut(s)	112, 395
BciT130I	CCWGG	3 cut(s)	277, 677, 967
BcoDI	GTCTC	5 cut(s)	311, 398, 497, 505, 1032
BcuI	ACTAGT	1 cut(s)	817
BfaI	CTAG	2 cut(s)	708, 818
BfmI	CTRYAG	2 cut(s)	894, 1090
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	3 cut(s)	277, 677, 967
BmeRI	GACNNNNNGTC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	600, 825
BmrFI	CCNGG	3 cut(s)	277, 677, 967
BpiI	GAAGAC	1 cut(s)	977
BpmI	CTGGAG	2 cut(s)	380, 896
BpuEI	CTTGAG	1 cut(s)	502
Bsa29I	ATCGAT	1 cut(s)	404
BsaBI	GATNNNNATC	1 cut(s)	342
BsaI	GGTCTC	3 cut(s)	311, 398, 1032
BsaJI	CCNNGG	4 cut(s)	615, 675, 843, 965
Bsc4I	CCNNNNNNNGG	4 cut(s)	594, 898, 1074, 1128
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	979
Bse3DI	GCAATG	1 cut(s)	1078
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	3 cut(s)	277, 677, 967
BseCI	ATCGAT	1 cut(s)	404
BseDI	CCNNGG	4 cut(s)	615, 675, 843, 965
BseGI	GGATG	1 cut(s)	1102
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	4 cut(s)	594, 898, 1074, 1128
BseMI	GCAATG	1 cut(s)	1078
BseNI	ACTGG	1 cut(s)	979
BseRI	GAGGAG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	601
BsgI	GTGCAG	1 cut(s)	612
Bsh1285I	CGRYCG	1 cut(s)	606
BshFI	GGCC	1 cut(s)	352
BshNI	GGYRCC	1 cut(s)	598
BshVI	ATCGAT	1 cut(s)	404
BsiEI	CGRYCG	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	353
BslI	CCNNNNNNNGG	4 cut(s)	594, 898, 1074, 1128
BsmAI	GTCTC	5 cut(s)	311, 398, 497, 505, 1032
BsnI	GGCC	1 cut(s)	352
Bso31I	GGTCTC	3 cut(s)	311, 398, 1032
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp143I	GATC	8 cut(s)	206, 284, 343, 369, 417, 569, 603, 867
Bsp19I	CCATGG	1 cut(s)	843
BspACI	CCGC	1 cut(s)	935
BspANI	GGCC	1 cut(s)	352
BspDI	ATCGAT	1 cut(s)	404
BspLI	GGNNCC	2 cut(s)	600, 825
BspMAI	CTGCAG	2 cut(s)	898, 1094
BspPI	GGATC	2 cut(s)	214, 564
BspT107I	GGYRCC	1 cut(s)	598
BspTNI	GGTCTC	3 cut(s)	311, 398, 1032
BsrDI	GCAATG	1 cut(s)	1078
BsrFI	RCCGGY	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	979
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	4 cut(s)	615, 675, 843, 965
BssMI	GATC	8 cut(s)	206, 284, 343, 369, 417, 569, 603, 867
BssT1I	CCWWGG	2 cut(s)	615, 843
Bst2UI	CCWGG	3 cut(s)	277, 677, 967
Bst4CI	ACNGT	3 cut(s)	52, 424, 1109
Bst6I	CTCTTC	2 cut(s)	798, 1049
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstDEI	CTNAG	1 cut(s)	566
BstDSI	CCRYGG	1 cut(s)	843
BstF5I	GGATG	1 cut(s)	1102
BstKTI	GATC	8 cut(s)	209, 287, 346, 372, 420, 572, 606, 870
BstMAI	GTCTC	5 cut(s)	311, 398, 497, 505, 1032
BstMBI	GATC	8 cut(s)	206, 284, 343, 369, 417, 569, 603, 867
BstMCI	CGRYCG	1 cut(s)	606
BstMWI	GCNNNNNNNGC	1 cut(s)	626
BstNI	CCWGG	3 cut(s)	277, 677, 967
BstSCI	CCNGG	3 cut(s)	275, 675, 965
BstSFI	CTRYAG	2 cut(s)	894, 1090
BstSLI	GKGCMC	1 cut(s)	601
BstV2I	GAAGAC	1 cut(s)	977
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
Bsu15I	ATCGAT	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	352
BsuTUI	ATCGAT	1 cut(s)	404
BtgI	CCRYGG	1 cut(s)	843
BtsCI	GGATG	1 cut(s)	1102
BtsI	GCAGTG	1 cut(s)	903
BtsIMutI	CAGTG	2 cut(s)	903, 1114
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	350
ClaI	ATCGAT	1 cut(s)	404
Csp6I	GTAC	4 cut(s)	265, 376, 433, 462
CviAII	CATG	8 cut(s)	108, 323, 347, 533, 542, 561, 589, 844
CviJI	RGCY	9 cut(s)	22, 200, 224, 352, 565, 826, 860, 880, 1134
CviKI_1	RGCY	9 cut(s)	22, 200, 224, 352, 565, 826, 860, 880, 1134
CviQI	GTAC	4 cut(s)	265, 376, 433, 462
DdeI	CTNAG	1 cut(s)	566
DpnI	GATC	8 cut(s)	208, 286, 345, 371, 419, 571, 605, 869
DpnII	GATC	8 cut(s)	206, 284, 343, 369, 417, 569, 603, 867
DriI	GACNNNNNGTC	1 cut(s)	120
Eam1104I	CTCTTC	2 cut(s)	798, 1049
Eam1105I	GACNNNNNGTC	1 cut(s)	120
EarI	CTCTTC	2 cut(s)	798, 1049
Eco130I	CCWWGG	2 cut(s)	615, 843
Eco31I	GGTCTC	3 cut(s)	311, 398, 1032
EcoRI	GAATTC	2 cut(s)	5, 913
EcoRII	CCWGG	3 cut(s)	275, 675, 965
EcoT14I	CCWWGG	2 cut(s)	615, 843
ErhI	CCWWGG	2 cut(s)	615, 843
FaeI	CATG	8 cut(s)	111, 326, 350, 536, 545, 564, 592, 847
FatI	CATG	8 cut(s)	107, 322, 346, 532, 541, 560, 588, 843
FokI	GGATG	1 cut(s)	1109
FspBI	CTAG	2 cut(s)	708, 818
GsuI	CTGGAG	2 cut(s)	380, 896
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	1 cut(s)	353
Hin1II	CATG	8 cut(s)	111, 326, 350, 536, 545, 564, 592, 847
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	5 cut(s)	71, 86, 704, 902, 1112
HpaI	GTTAAC	1 cut(s)	27
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	3 cut(s)	713, 781, 820
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	6 cut(s)	76, 313, 691, 907, 987, 1047
Hpy188III	TCNNGA	5 cut(s)	90, 153, 494, 662, 875
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	4 cut(s)	202, 452, 825, 997
HpyCH4III	ACNGT	3 cut(s)	52, 424, 1109
HpyCH4V	TGCA	7 cut(s)	528, 629, 896, 994, 1033, 1071, 1092
HpyF10VI	GCNNNNNNNGC	1 cut(s)	626
HpyF3I	CTNAG	1 cut(s)	566
Hsp92II	CATG	8 cut(s)	111, 326, 350, 536, 545, 564, 592, 847
KspAI	GTTAAC	1 cut(s)	27
Kzo9I	GATC	8 cut(s)	206, 284, 343, 369, 417, 569, 603, 867
LmnI	GCTCC	3 cut(s)	823, 877, 1131
MaeI	CTAG	2 cut(s)	708, 818
MaeIII	GTNAC	1 cut(s)	701
MalI	GATC	8 cut(s)	208, 286, 345, 371, 419, 571, 605, 869
MboI	GATC	8 cut(s)	206, 284, 343, 369, 417, 569, 603, 867
MfeI	CAATTG	2 cut(s)	798, 1124
MflI	RGATCY	1 cut(s)	569
MhlI	GDGCHC	1 cut(s)	601
MlyI	GAGTC	1 cut(s)	698
MmeI	TCCRAC	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	960
MseI	TTAA	2 cut(s)	26, 947
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	3 cut(s)	277, 677, 967
MunI	CAATTG	2 cut(s)	798, 1124
MvaI	CCWGG	3 cut(s)	277, 677, 967
MwoI	GCNNNNNNNGC	1 cut(s)	626
NcoI	CCATGG	1 cut(s)	843
NdeII	GATC	8 cut(s)	206, 284, 343, 369, 417, 569, 603, 867
NlaIII	CATG	8 cut(s)	111, 326, 350, 536, 545, 564, 592, 847
NlaIV	GGNNCC	2 cut(s)	600, 825
NmuCI	GTSAC	1 cut(s)	701
OliI	CACNNNNGTG	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	960
PfeI	GAWTC	4 cut(s)	71, 86, 902, 1112
Ple19I	CGATCG	1 cut(s)	606
PleI	GAGTC	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	698
Psp6I	CCWGG	3 cut(s)	275, 675, 965
PspGI	CCWGG	3 cut(s)	275, 675, 965
PspN4I	GGNNCC	2 cut(s)	600, 825
PspPI	GGNCC	1 cut(s)	350
PsrI	GAACNNNNNNTAC	2 cut(s)	454, 486
PstI	CTGCAG	2 cut(s)	898, 1094
PsuI	RGATCY	1 cut(s)	569
PvuI	CGATCG	1 cut(s)	606
RsaI	GTAC	4 cut(s)	266, 377, 434, 463
RsaNI	GTAC	4 cut(s)	265, 376, 433, 462
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	26, 947
Sau3AI	GATC	8 cut(s)	206, 284, 343, 369, 417, 569, 603, 867
Sau96I	GGNCC	1 cut(s)	350
ScaI	AGTACT	1 cut(s)	266
SchI	GAGTC	1 cut(s)	698
ScrFI	CCNGG	3 cut(s)	277, 677, 967
SduI	GDGCHC	1 cut(s)	601
SfcI	CTRYAG	2 cut(s)	894, 1090
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
SpeI	ACTAGT	1 cut(s)	817
SsiI	CCGC	1 cut(s)	935
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	2 cut(s)	708, 818
StyD4I	CCNGG	3 cut(s)	275, 675, 965
StyI	CCWWGG	2 cut(s)	615, 843
TaaI	ACNGT	3 cut(s)	52, 424, 1109
TaqI	TCGA	2 cut(s)	404, 416
TaqII	GACCGA	1 cut(s)	380
TatI	WGTACW	2 cut(s)	264, 432
TfiI	GAWTC	4 cut(s)	71, 86, 902, 1112
Tru1I	TTAA	2 cut(s)	26, 947
Tru9I	TTAA	2 cut(s)	26, 947
TscAI	CASTG	2 cut(s)	903, 1114
TseFI	GTSAC	1 cut(s)	701
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	5 cut(s)	177, 354, 530, 804, 1067
TspRI	CASTG	2 cut(s)	903, 1114
XapI	RAATTY	4 cut(s)	5, 684, 729, 913
XmnI	GAANNNNTTC	1 cut(s)	960
XspI	CTAG	2 cut(s)	708, 818
ZrmI	AGTACT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.