Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024207.1

Orthogroup ID

OG0016518

Physical Location & Seq

Genomic Coordinates Reverse (-)

5483 .. 6550

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024207.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atgagattaaaacacaggaagctgactagcgactgcgcaccctgcactcctaactgtttacaagaatgtaaacaccatagatccattaccttcatagccgtcgcatcgtcgttggctgcaatcgctttgcttgtaatttattttctctatgtaaagtactacaaaaacagaagaagatcaccatcacaaccacaaccacaacaacatctacctcatcaagaggaggagactcttcatcatcatgatcatcatgctgagttgcttattgatgaagagcatgggcctgtggttgaccaccccatatggtacatccgcaccgtcggtctgcaacaatcgcttatcagctccatcagcgtgtgccagtacaagaaaggtgatggccttatcgaagggacagagtgcgctgtgtgcttgagtgagttccaagaagatgagactttgagacttttgccaaagtgtgatcatgcttttcatattccctgtattgatacttggctcacatctcatacaaattgccccttgtgccgagcccccattatcaaaaccggcgcaacagatgtggcaccacccgaaccatttgttgcagctgattcaagtgagccagcagaggaagaaacaccggtcgaggttctagaaaatacaggtgagtccggtactagtactggaggagttgaagatgaaatttgtgatgggattattcggactactggagcaggggaagatgatatcattaacaaacagatctgtattaatgaggaggaggtggatgatgaagtggaggagccaagaagaagatcggtttccatggattctgcatcagctttgaagattagtcttgcggtttctaatgttgttgaggtggataaatcaaaccgggggattgaaattgttgccaagagagttgggggagatcagaaattgtcaaggcagaaaggtagttcttcaagaggggcatctttacaaaatggaaaacaaacaattcagaagtcgtcttcctggaatggcaagttctcattatgcagggacatcaacaactgtgactctgttgttccactgcgaagcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

355

Amino Acids

39.3

Weight (kDa)

5.46

Isoelectric Point (pI)

63.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33565
fragaria_vesca	FvH4_2g23890
prunus_persica	Prupe.8G066400_v2.0.a1 Prupe.8G066400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291501
rosa_laevigata	RLG00000012111
rosa_multiflora	Rmu_sc0024207.1_g000003 Rmu_sc0026626.1_g000002
rosa_rugosa	Rorug06G0220000
rosa_samantha	Rh6AG332100 Rh6BG339000 Rh6CG345200 Rh6DG332600
rosa_wichuraiana	Rw6G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	37
AccB1I	GGYRCC	1 cut(s)	562
AciI	CCGC	2 cut(s)	313, 839
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	681
AfaI	GTAC	5 cut(s)	158, 308, 365, 655, 661
AgeI	ACCGGT	1 cut(s)	619
AgsI	TTSAA	5 cut(s)	594, 674, 826, 884, 945
AhlI	ACTAGT	1 cut(s)	656
AjnI	CCWGG	1 cut(s)	995
AluBI	AGCT	5 cut(s)	22, 345, 587, 821, 1062
AluI	AGCT	5 cut(s)	22, 345, 587, 821, 1062
Alw26I	GTCTC	3 cut(s)	221, 428, 436
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	2 cut(s)	281, 379
ApeKI	GCWGC	2 cut(s)	116, 584
ApoI	RAATTY	1 cut(s)	681
AseI	ATTAAT	1 cut(s)	750
AsiGI	ACCGGT	1 cut(s)	619
AspLEI	GCGC	3 cut(s)	38, 404, 551
AspS9I	GGNCC	1 cut(s)	281
AsuC2I	CCSGG	1 cut(s)	875
AsuHPI	GGTGA	3 cut(s)	171, 386, 656
BanI	GGYRCC	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	984
BbvI	GCAGC	2 cut(s)	103, 596
BccI	CCATC	4 cut(s)	190, 356, 371, 683
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	997
BclI	TGATCA	2 cut(s)	244, 460
BcnI	CCSGG	1 cut(s)	875
BcoDI	GTCTC	3 cut(s)	221, 428, 436
BcuI	ACTAGT	1 cut(s)	656
BfaI	CTAG	3 cut(s)	27, 632, 657
BglII	AGATCT	1 cut(s)	741
BisI	GCNGC	2 cut(s)	117, 585
BlsI	GCNGC	2 cut(s)	118, 586
BmcAI	AGTACT	2 cut(s)	158, 661
Bme1390I	CCNGG	2 cut(s)	875, 997
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	2 cut(s)	564, 783
BmrFI	CCNGG	2 cut(s)	875, 997
BmsI	GCATC	3 cut(s)	113, 824, 962
BpiI	GAAGAC	1 cut(s)	984
BpmI	CTGGAG	2 cut(s)	684, 729
BpuEI	CTTGAG	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	875
BsaBI	GATNNNNATC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	804, 874
BsaWI	WCCGGW	2 cut(s)	619, 650
Bse118I	RCCGGY	2 cut(s)	545, 619
Bse1I	ACTGG	3 cut(s)	361, 667, 712
Bse8I	GATNNNNATC	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	997
BseDI	CCNNGG	2 cut(s)	804, 874
BseGI	GGATG	2 cut(s)	309, 772
BseJI	GATNNNNATC	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	3 cut(s)	361, 667, 712
BseRI	GAGGAG	6 cut(s)	236, 239, 681, 770, 773, 794
BseXI	GCAGC	2 cut(s)	103, 596
BsgI	GTGCAG	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	624
BshFI	GGCC	2 cut(s)	283, 381
BshNI	GGYRCC	1 cut(s)	562
BshTI	ACCGGT	1 cut(s)	619
BsiEI	CGRYCG	1 cut(s)	624
BsiSI	CCGG	4 cut(s)	546, 620, 651, 874
BslFI	GGGAC	2 cut(s)	406, 1037
BsmAI	GTCTC	3 cut(s)	221, 428, 436
BsmFI	GGGAC	2 cut(s)	406, 1037
BsnI	GGCC	2 cut(s)	283, 381
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	7 cut(s)	80, 176, 244, 460, 741, 794, 910
Bsp19I	CCATGG	1 cut(s)	804
BspACI	CCGC	2 cut(s)	313, 839
BspANI	GGCC	2 cut(s)	283, 381
BspCNI	CTCAG	1 cut(s)	247
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	564, 783
BspPI	GGATC	1 cut(s)	75
BspQI	GCTCTTC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	562
BsrFI	RCCGGY	2 cut(s)	545, 619
BsrI	ACTGG	3 cut(s)	361, 667, 712
BssAI	RCCGGY	2 cut(s)	545, 619
BssECI	CCNNGG	2 cut(s)	804, 874
BssMI	GATC	7 cut(s)	80, 176, 244, 460, 741, 794, 910
BssT1I	CCWWGG	1 cut(s)	804
Bst2UI	CCWGG	1 cut(s)	997
Bst4CI	ACNGT	3 cut(s)	56, 319, 1037
Bst6I	CTCTTC	2 cut(s)	237, 267
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	804
BstF5I	GGATG	2 cut(s)	309, 772
BstHHI	GCGC	3 cut(s)	38, 404, 551
BstKTI	GATC	7 cut(s)	83, 179, 247, 463, 744, 797, 913
BstMAI	GTCTC	3 cut(s)	221, 428, 436
BstMBI	GATC	7 cut(s)	80, 176, 244, 460, 741, 794, 910
BstMCI	CGRYCG	1 cut(s)	624
BstMWI	GCNNNNNNNGC	6 cut(s)	42, 122, 334, 351, 408, 522
BstNI	CCWGG	1 cut(s)	997
BstSCI	CCNGG	2 cut(s)	873, 995
BstV1I	GCAGC	2 cut(s)	103, 596
BstV2I	GAAGAC	1 cut(s)	984
BstX2I	RGATCY	2 cut(s)	80, 741
BstYI	RGATCY	2 cut(s)	80, 741
BsuRI	GGCC	2 cut(s)	283, 381
BtgI	CCRYGG	1 cut(s)	804
BtsCI	GGATG	2 cut(s)	309, 772
BtsI	GCAGTG	1 cut(s)	1052
BtsIMutI	CAGTG	1 cut(s)	1052
Cac8I	GCNNGC	1 cut(s)	603
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	3 cut(s)	38, 404, 551
Cfr10I	RCCGGY	2 cut(s)	545, 619
Cfr13I	GGNCC	1 cut(s)	281
Csp6I	GTAC	5 cut(s)	157, 307, 364, 654, 660
CspAI	ACCGGT	1 cut(s)	619
CspCI	CAANNNNNGTGG	2 cut(s)	540, 575
CviAII	CATG	5 cut(s)	242, 251, 278, 464, 805
CviQI	GTAC	5 cut(s)	157, 307, 364, 654, 660
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	7 cut(s)	82, 178, 246, 462, 743, 796, 912
DpnII	GATC	7 cut(s)	80, 176, 244, 460, 741, 794, 910
Eam1104I	CTCTTC	2 cut(s)	237, 267
EarI	CTCTTC	2 cut(s)	237, 267
Eco130I	CCWWGG	1 cut(s)	804
Eco24I	GRGCYC	1 cut(s)	532
Eco32I	GATATC	1 cut(s)	727
EcoRII	CCWGG	1 cut(s)	995
EcoRV	GATATC	1 cut(s)	727
EcoT14I	CCWWGG	1 cut(s)	804
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	804
FaeI	CATG	5 cut(s)	245, 254, 281, 467, 808
FaqI	GGGAC	2 cut(s)	406, 1037
FatI	CATG	5 cut(s)	241, 250, 277, 463, 804
FauNDI	CATATG	1 cut(s)	302
FbaI	TGATCA	2 cut(s)	244, 460
Fnu4HI	GCNGC	2 cut(s)	117, 585
FokI	GGATG	2 cut(s)	296, 779
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	2 cut(s)	117, 585
FspBI	CTAG	3 cut(s)	27, 632, 657
FspI	TGCGCA	1 cut(s)	37
GlaI	GCGC	3 cut(s)	37, 403, 550
GluI	GCNGC	2 cut(s)	117, 585
GsuI	CTGGAG	2 cut(s)	684, 729
HaeIII	GGCC	2 cut(s)	283, 381
HapII	CCGG	4 cut(s)	546, 620, 651, 874
HhaI	GCGC	3 cut(s)	38, 404, 551
Hin1II	CATG	5 cut(s)	245, 254, 281, 467, 808
Hin6I	GCGC	3 cut(s)	36, 402, 549
HinP1I	GCGC	3 cut(s)	36, 402, 549
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	1060
HinfI	GANTC	5 cut(s)	229, 590, 647, 809, 1040
HpaII	CCGG	4 cut(s)	546, 620, 651, 874
HphI	GGTGA	3 cut(s)	171, 386, 656
Hpy166II	GTNNAC	3 cut(s)	59, 71, 292
Hpy188I	TCNGA	3 cut(s)	702, 915, 984
Hpy188III	TCNNGA	4 cut(s)	218, 242, 632, 945
Hpy8I	GTNNAC	3 cut(s)	59, 71, 292
Hpy99I	CGWCG	3 cut(s)	104, 112, 323
HpyAV	CCTTC	2 cut(s)	100, 383
HpyCH4III	ACNGT	3 cut(s)	56, 319, 1037
HpyCH4V	TGCA	6 cut(s)	45, 119, 328, 584, 815, 1020
HpyF10VI	GCNNNNNNNGC	6 cut(s)	42, 122, 334, 351, 408, 522
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	5 cut(s)	245, 254, 281, 467, 808
HspAI	GCGC	3 cut(s)	36, 402, 549
Ksp22I	TGATCA	2 cut(s)	244, 460
Kzo9I	GATC	7 cut(s)	80, 176, 244, 460, 741, 794, 910
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	3 cut(s)	350, 710, 781
Lsp1109I	GCAGC	2 cut(s)	103, 596
LweI	GCATC	3 cut(s)	113, 824, 962
MaeI	CTAG	3 cut(s)	27, 632, 657
MaeIII	GTNAC	1 cut(s)	1037
MalI	GATC	7 cut(s)	82, 178, 246, 462, 743, 796, 912
MboI	GATC	7 cut(s)	80, 176, 244, 460, 741, 794, 910
MflI	RGATCY	2 cut(s)	80, 741
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	6 cut(s)	135, 511, 681, 885, 917, 978
MlyI	GAGTC	3 cut(s)	223, 656, 1034
MseI	TTAA	3 cut(s)	8, 732, 750
MslI	CAYNNNNRTG	2 cut(s)	240, 353
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	4 cut(s)	546, 620, 651, 874
MspR9I	CCNGG	2 cut(s)	875, 997
MvaI	CCWGG	1 cut(s)	997
MwoI	GCNNNNNNNGC	6 cut(s)	42, 122, 334, 351, 408, 522
NciI	CCSGG	1 cut(s)	875
NcoI	CCATGG	1 cut(s)	804
NdeI	CATATG	1 cut(s)	302
NdeII	GATC	7 cut(s)	80, 176, 244, 460, 741, 794, 910
NlaIII	CATG	5 cut(s)	245, 254, 281, 467, 808
NlaIV	GGNNCC	2 cut(s)	564, 783
NmeAIII	GCCGAG	1 cut(s)	551
NmuCI	GTSAC	1 cut(s)	1037
NsbI	TGCGCA	1 cut(s)	37
PagI	TCATGA	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	590, 809
PfoI	TCCNGGA	1 cut(s)	995
PinAI	ACCGGT	1 cut(s)	619
PkrI	GCNGC	2 cut(s)	118, 586
PleI	GAGTC	3 cut(s)	223, 655, 1034
PpsI	GAGTC	3 cut(s)	223, 655, 1034
PshBI	ATTAAT	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	995
PspGI	CCWGG	1 cut(s)	995
PspN4I	GGNNCC	2 cut(s)	564, 783
PspPI	GGNCC	1 cut(s)	281
PsuI	RGATCY	2 cut(s)	80, 741
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	5 cut(s)	158, 308, 365, 655, 661
RsaNI	GTAC	5 cut(s)	157, 307, 364, 654, 660
RseI	CAYNNNNRTG	2 cut(s)	240, 353
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	8, 732, 750
SatI	GCNGC	2 cut(s)	117, 585
Sau3AI	GATC	7 cut(s)	80, 176, 244, 460, 741, 794, 910
Sau96I	GGNCC	1 cut(s)	281
ScaI	AGTACT	2 cut(s)	158, 661
SchI	GAGTC	3 cut(s)	223, 656, 1034
ScrFI	CCNGG	2 cut(s)	875, 997
SduI	GDGCHC	1 cut(s)	532
SfaNI	GCATC	3 cut(s)	113, 824, 962
SmiMI	CAYNNNNRTG	2 cut(s)	240, 353
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
SpeI	ACTAGT	1 cut(s)	656
Sse9I	AATT	6 cut(s)	135, 511, 681, 885, 917, 978
SsiI	CCGC	2 cut(s)	313, 839
SspMI	CTAG	3 cut(s)	27, 632, 657
StyD4I	CCNGG	2 cut(s)	873, 995
StyI	CCWWGG	1 cut(s)	804
TaaI	ACNGT	3 cut(s)	56, 319, 1037
TaqI	TCGA	2 cut(s)	387, 624
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	6 cut(s)	135, 511, 681, 885, 917, 978
TatI	WGTACW	3 cut(s)	156, 363, 659
TfiI	GAWTC	2 cut(s)	590, 809
Tru1I	TTAA	3 cut(s)	8, 732, 750
Tru9I	TTAA	3 cut(s)	8, 732, 750
TscAI	CASTG	1 cut(s)	1059
TseFI	GTSAC	1 cut(s)	1037
TseI	GCWGC	2 cut(s)	116, 584
Tsp45I	GTSAC	1 cut(s)	1037
TspDTI	ATGAA	6 cut(s)	82, 224, 285, 461, 693, 786
TspRI	CASTG	1 cut(s)	1059
VspI	ATTAAT	1 cut(s)	750
XapI	RAATTY	1 cut(s)	681
XbaI	TCTAGA	1 cut(s)	631
XspI	CTAG	3 cut(s)	27, 632, 657
ZrmI	AGTACT	2 cut(s)	158, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.