Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016518

Physical Location & Seq

Genomic Coordinates Reverse (-)

53357992 .. 53359083

Gene Structure 1092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG332100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAATTTAAGCACAGAAAGCTGAGTAGCCAATACTGCGAGGATTGCATGAAGCTTGATCCTGAGAACTGTCCATCAATATGTAAAATCCACCATAAACCCAAAATCTTCATAGTCGTAGTATCGTCGTTGGCTGCAATCGCTTTGCTTGTTATTTGCGGCTATTTTCTCTATGTAAAGTTCTACAAAAACAGAAGAAGATCACCATCACAACCACAACCACAACAACATCTACCTCATCAAGAGGAGGAGACTCTTCATCATCCTGATCATCATGCTGAGTTGTTTATTGATGAAGAGCATGGACCTGTGGTTGACCACCCCATATGGTACATCCGCACCGTCGGTCTGCAACAATCGCTTATCAGCTCCATCAGCGTGTGCCAGTACAAGAAAGGTGATGGCCTTATCGAAGGGACAGAGTGCGCTGTGTGCTTGAGTGAGTTCCAAGAAGATGAGACTTTGAGACTTTTGCCAAAGTGTGATCATGCTTTTCATATTCCCTGTATTGATACTTGGCTCACATCTCATACAAATTGCCCATTGTGCCGAGCCCCCATTATCAAAACCGGCGCAACAGATGTGGCACCACCCGAACCATTTGTTGCAGCTGATTCAGGTGAGCCAGCAGAGGAAGAAACACCGGTCGAGGTTCTAGAAAATACAGGTGAGTCCGGTACTAGTACTGGAGGAGTTGAAGATGAAATTTGTGATGGGATTATTCGGACTACTGGAGCAGGGGAAGATGATATCATTAACAAACAGATCTGTATTAATGAGGAGGAGGTGGATGATGATGTGGAGGAGCCAAGAAGAAGATCGGTTTCCATGGATTCTGCATCAGCTTTGAAGATTAGTCTTGCGGTTTCTAATGTTGTTGAGGTGGATAAATCAAACCGGGGGATTGAAATTGTTGCCAAGAGAGTTGGGGGAGATCAGAAATTGTCAAGGCAGAAAGGTAGTTCTTCAAGAGGGGCATCTTTACAAAATGGAAAACAAACAATTCAGAAGTCGTCTTCCTGGAATGGCAAGTTCTCATTATGCAGGGACATCAACAACTGTGACTCTGTTGTTCCACTGCGAAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

363

Amino Acids

40.26

Weight (kDa)

5.28

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	141 - 184	2.4e-13	Ring finger domain
zf-RING_11	PF17123	141 - 170	4.4e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	141 - 183	1.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	142 - 184	2.2e-08	RING-H2 zinc finger domain
zf-C3HC4	PF00097	142 - 183	5.4e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33565
fragaria_vesca	FvH4_2g23890
prunus_persica	Prupe.8G066400_v2.0.a1 Prupe.8G066400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291501
rosa_laevigata	RLG00000012111
rosa_multiflora	Rmu_sc0024207.1_g000003 Rmu_sc0026626.1_g000002
rosa_rugosa	Rorug06G0220000
rosa_samantha	Rh6AG332100 Rh6BG339000 Rh6CG345200 Rh6DG332600
rosa_wichuraiana	Rw6G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	586
AciI	CCGC	3 cut(s)	159, 337, 863
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	5, 705
AfaI	GTAC	4 cut(s)	332, 389, 679, 685
AgeI	ACCGGT	1 cut(s)	643
AgsI	TTSAA	4 cut(s)	698, 850, 908, 969
AhlI	ACTAGT	1 cut(s)	680
AjnI	CCWGG	1 cut(s)	1019
AluBI	AGCT	6 cut(s)	22, 55, 369, 611, 845, 1086
AluI	AGCT	6 cut(s)	22, 55, 369, 611, 845, 1086
Alw26I	GTCTC	3 cut(s)	245, 452, 460
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	2 cut(s)	134, 608
ApoI	RAATTY	2 cut(s)	5, 705
AseI	ATTAAT	1 cut(s)	774
AsiGI	ACCGGT	1 cut(s)	643
AspLEI	GCGC	2 cut(s)	428, 575
AspS9I	GGNCC	1 cut(s)	305
AsuC2I	CCSGG	1 cut(s)	899
AsuHPI	GGTGA	4 cut(s)	195, 410, 632, 680
AvaII	GGWCC	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	556
BbsI	GAAGAC	1 cut(s)	1008
BbvI	GCAGC	2 cut(s)	121, 620
BccI	CCATC	5 cut(s)	82, 214, 380, 395, 707
BciT130I	CCWGG	1 cut(s)	1021
BclI	TGATCA	2 cut(s)	268, 484
BcnI	CCSGG	1 cut(s)	899
BcoDI	GTCTC	3 cut(s)	245, 452, 460
BcuI	ACTAGT	1 cut(s)	680
BfaI	CTAG	2 cut(s)	656, 681
BglII	AGATCT	1 cut(s)	765
BisI	GCNGC	3 cut(s)	135, 160, 609
BlsI	GCNGC	3 cut(s)	136, 161, 610
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	2 cut(s)	899, 1021
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	2 cut(s)	588, 807
BmrFI	CCNGG	2 cut(s)	899, 1021
BmsI	GCATC	2 cut(s)	848, 986
BpiI	GAAGAC	1 cut(s)	1008
BpmI	CTGGAG	2 cut(s)	708, 753
BpuEI	CTTGAG	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	899
BsaBI	GATNNNNATC	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	828, 898
BsaWI	WCCGGW	2 cut(s)	643, 674
Bse118I	RCCGGY	2 cut(s)	569, 643
Bse1I	ACTGG	3 cut(s)	385, 691, 736
Bse8I	GATNNNNATC	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	1021
BseDI	CCNNGG	2 cut(s)	828, 898
BseGI	GGATG	3 cut(s)	262, 333, 796
BseJI	GATNNNNATC	1 cut(s)	205
BseMII	CTCAG	3 cut(s)	14, 54, 270
BseNI	ACTGG	3 cut(s)	385, 691, 736
BseRI	GAGGAG	6 cut(s)	260, 263, 705, 794, 797, 818
BseXI	GCAGC	2 cut(s)	121, 620
Bsh1285I	CGRYCG	1 cut(s)	648
BshFI	GGCC	1 cut(s)	405
BshNI	GGYRCC	1 cut(s)	586
BshTI	ACCGGT	1 cut(s)	643
BsiEI	CGRYCG	1 cut(s)	648
BsiSI	CCGG	4 cut(s)	570, 644, 675, 898
BslFI	GGGAC	2 cut(s)	430, 1061
BsmAI	GTCTC	3 cut(s)	245, 452, 460
BsmFI	GGGAC	2 cut(s)	430, 1061
BsnI	GGCC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	7 cut(s)	58, 200, 268, 484, 765, 818, 934
Bsp19I	CCATGG	1 cut(s)	828
BspACI	CCGC	3 cut(s)	159, 337, 863
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	3 cut(s)	15, 55, 271
BspLI	GGNNCC	2 cut(s)	588, 807
BspPI	GGATC	1 cut(s)	53
BspQI	GCTCTTC	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	586
BsrFI	RCCGGY	2 cut(s)	569, 643
BsrI	ACTGG	3 cut(s)	385, 691, 736
BssAI	RCCGGY	2 cut(s)	569, 643
BssECI	CCNNGG	2 cut(s)	828, 898
BssMI	GATC	7 cut(s)	58, 200, 268, 484, 765, 818, 934
BssT1I	CCWWGG	1 cut(s)	828
Bst2UI	CCWGG	1 cut(s)	1021
Bst4CI	ACNGT	3 cut(s)	71, 343, 1061
Bst6I	CTCTTC	2 cut(s)	261, 291
BstC8I	GCNNGC	1 cut(s)	627
BstDEI	CTNAG	3 cut(s)	23, 63, 279
BstDSI	CCRYGG	1 cut(s)	828
BstF5I	GGATG	3 cut(s)	262, 333, 796
BstHHI	GCGC	2 cut(s)	428, 575
BstKTI	GATC	7 cut(s)	61, 203, 271, 487, 768, 821, 937
BstMAI	GTCTC	3 cut(s)	245, 452, 460
BstMBI	GATC	7 cut(s)	58, 200, 268, 484, 765, 818, 934
BstMCI	CGRYCG	1 cut(s)	648
BstMWI	GCNNNNNNNGC	8 cut(s)	19, 36, 45, 140, 358, 375, 432, 546
BstNI	CCWGG	1 cut(s)	1021
BstSCI	CCNGG	2 cut(s)	897, 1019
BstV1I	GCAGC	2 cut(s)	121, 620
BstV2I	GAAGAC	1 cut(s)	1008
BstX2I	RGATCY	1 cut(s)	765
BstYI	RGATCY	1 cut(s)	765
BsuRI	GGCC	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	828
BtsCI	GGATG	3 cut(s)	262, 333, 796
BtsI	GCAGTG	1 cut(s)	1076
BtsIMutI	CAGTG	1 cut(s)	1076
Cac8I	GCNNGC	1 cut(s)	627
CfoI	GCGC	2 cut(s)	428, 575
Cfr10I	RCCGGY	2 cut(s)	569, 643
Cfr13I	GGNCC	1 cut(s)	305
Csp6I	GTAC	4 cut(s)	331, 388, 678, 684
CspAI	ACCGGT	1 cut(s)	643
CspCI	CAANNNNNGTGG	2 cut(s)	564, 599
CviAII	CATG	5 cut(s)	49, 275, 302, 488, 829
CviQI	GTAC	4 cut(s)	331, 388, 678, 684
DdeI	CTNAG	3 cut(s)	23, 63, 279
DpnI	GATC	7 cut(s)	60, 202, 270, 486, 767, 820, 936
DpnII	GATC	7 cut(s)	58, 200, 268, 484, 765, 818, 934
Eam1104I	CTCTTC	2 cut(s)	261, 291
EarI	CTCTTC	2 cut(s)	261, 291
Eco130I	CCWWGG	1 cut(s)	828
Eco24I	GRGCYC	1 cut(s)	556
Eco32I	GATATC	1 cut(s)	751
Eco47I	GGWCC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	1019
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	828
EcoT38I	GRGCYC	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	828
FaeI	CATG	5 cut(s)	52, 278, 305, 491, 832
FaqI	GGGAC	2 cut(s)	430, 1061
FatI	CATG	5 cut(s)	48, 274, 301, 487, 828
FauNDI	CATATG	1 cut(s)	326
FbaI	TGATCA	2 cut(s)	268, 484
Fnu4HI	GCNGC	3 cut(s)	135, 160, 609
FokI	GGATG	3 cut(s)	249, 320, 803
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	3 cut(s)	135, 160, 609
FspBI	CTAG	2 cut(s)	656, 681
GlaI	GCGC	2 cut(s)	427, 574
GluI	GCNGC	3 cut(s)	135, 160, 609
GsuI	CTGGAG	2 cut(s)	708, 753
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	4 cut(s)	570, 644, 675, 898
HhaI	GCGC	2 cut(s)	428, 575
Hin1II	CATG	5 cut(s)	52, 278, 305, 491, 832
Hin6I	GCGC	2 cut(s)	426, 573
HinP1I	GCGC	2 cut(s)	426, 573
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	2 cut(s)	53, 1084
HinfI	GANTC	5 cut(s)	253, 614, 671, 833, 1064
HpaII	CCGG	4 cut(s)	570, 644, 675, 898
HphI	GGTGA	4 cut(s)	195, 410, 632, 680
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	3 cut(s)	726, 939, 1008
Hpy188III	TCNNGA	5 cut(s)	62, 242, 266, 656, 969
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	2 cut(s)	130, 347
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	3 cut(s)	71, 343, 1061
HpyCH4V	TGCA	6 cut(s)	48, 137, 352, 608, 839, 1044
HpyF10VI	GCNNNNNNNGC	8 cut(s)	19, 36, 45, 140, 358, 375, 432, 546
HpyF3I	CTNAG	3 cut(s)	23, 63, 279
Hsp92II	CATG	5 cut(s)	52, 278, 305, 491, 832
HspAI	GCGC	2 cut(s)	426, 573
Ksp22I	TGATCA	2 cut(s)	268, 484
Kzo9I	GATC	7 cut(s)	58, 200, 268, 484, 765, 818, 934
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	3 cut(s)	374, 734, 805
Lsp1109I	GCAGC	2 cut(s)	121, 620
LweI	GCATC	2 cut(s)	848, 986
MaeI	CTAG	2 cut(s)	656, 681
MaeIII	GTNAC	1 cut(s)	1061
MalI	GATC	7 cut(s)	60, 202, 270, 486, 767, 820, 936
MboI	GATC	7 cut(s)	58, 200, 268, 484, 765, 818, 934
MflI	RGATCY	1 cut(s)	765
MhlI	GDGCHC	1 cut(s)	556
MluCI	AATT	6 cut(s)	5, 535, 705, 909, 941, 1002
MlyI	GAGTC	3 cut(s)	247, 680, 1058
MseI	TTAA	3 cut(s)	9, 756, 774
MslI	CAYNNNNRTG	2 cut(s)	79, 377
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	4 cut(s)	570, 644, 675, 898
MspR9I	CCNGG	2 cut(s)	899, 1021
MvaI	CCWGG	1 cut(s)	1021
MwoI	GCNNNNNNNGC	8 cut(s)	19, 36, 45, 140, 358, 375, 432, 546
NciI	CCSGG	1 cut(s)	899
NcoI	CCATGG	1 cut(s)	828
NdeI	CATATG	1 cut(s)	326
NdeII	GATC	7 cut(s)	58, 200, 268, 484, 765, 818, 934
NlaIII	CATG	5 cut(s)	52, 278, 305, 491, 832
NlaIV	GGNNCC	2 cut(s)	588, 807
NmeAIII	GCCGAG	1 cut(s)	575
NmuCI	GTSAC	1 cut(s)	1061
PciSI	GCTCTTC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	614, 833
PfoI	TCCNGGA	1 cut(s)	1019
PinAI	ACCGGT	1 cut(s)	643
PkrI	GCNGC	3 cut(s)	136, 161, 610
PleI	GAGTC	3 cut(s)	247, 679, 1058
PpsI	GAGTC	3 cut(s)	247, 679, 1058
PshBI	ATTAAT	1 cut(s)	774
Psp6I	CCWGG	1 cut(s)	1019
PspGI	CCWGG	1 cut(s)	1019
PspN4I	GGNNCC	2 cut(s)	588, 807
PspPI	GGNCC	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	765
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	4 cut(s)	332, 389, 679, 685
RsaNI	GTAC	4 cut(s)	331, 388, 678, 684
RseI	CAYNNNNRTG	2 cut(s)	79, 377
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	9, 756, 774
SatI	GCNGC	3 cut(s)	135, 160, 609
Sau3AI	GATC	7 cut(s)	58, 200, 268, 484, 765, 818, 934
Sau96I	GGNCC	1 cut(s)	305
ScaI	AGTACT	1 cut(s)	685
SchI	GAGTC	3 cut(s)	247, 680, 1058
ScrFI	CCNGG	2 cut(s)	899, 1021
SduI	GDGCHC	1 cut(s)	556
SfaNI	GCATC	2 cut(s)	848, 986
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	2 cut(s)	79, 377
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
SpeI	ACTAGT	1 cut(s)	680
Sse9I	AATT	6 cut(s)	5, 535, 705, 909, 941, 1002
SsiI	CCGC	3 cut(s)	159, 337, 863
SspMI	CTAG	2 cut(s)	656, 681
StyD4I	CCNGG	2 cut(s)	897, 1019
StyI	CCWWGG	1 cut(s)	828
TaaI	ACNGT	3 cut(s)	71, 343, 1061
TaqI	TCGA	2 cut(s)	411, 648
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	6 cut(s)	5, 535, 705, 909, 941, 1002
TatI	WGTACW	2 cut(s)	387, 683
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	614, 833
Tru1I	TTAA	3 cut(s)	9, 756, 774
Tru9I	TTAA	3 cut(s)	9, 756, 774
TscAI	CASTG	1 cut(s)	1083
TseFI	GTSAC	1 cut(s)	1061
TseI	GCWGC	2 cut(s)	134, 608
Tsp45I	GTSAC	1 cut(s)	1061
TspDTI	ATGAA	6 cut(s)	65, 100, 248, 309, 485, 717
TspRI	CASTG	1 cut(s)	1083
VpaK11BI	GGWCC	1 cut(s)	305
VspI	ATTAAT	1 cut(s)	774
XapI	RAATTY	2 cut(s)	5, 705
XbaI	TCTAGA	1 cut(s)	655
XspI	CTAG	2 cut(s)	656, 681
ZrmI	AGTACT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.