Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016518

Physical Location & Seq

Genomic Coordinates Reverse (-)

57146390 .. 57147466

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG339000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGGATTAAAACACAGAAAGCTGTATGATCGCGTAGCCTGCAACTGCAAGGATTCTCGTACTCTCAACTGTTCAGCACGATGTAAACCATATATCTTTATAGCCGTCGCATCTTCGTTGGCTGCAATCGCTCTGCTTGTTATTTGTGGCTATTTTTTCTATGTAAAGTACTACAAAAACAGAAGAAGATCATCATCACAACCACAACCACAACAACATCTACCTCATCAGGAGGAGGAGACTCTTCATCATCATGATCATCATGCTGAGTTGTTTATTGATGAAGAGCATGGACCTGTGGTTGACCACCCCATATGGTACATCCGCACCGTCGGTCTGCAACAATCGCTTATCAGCTCCATCAGCGTGTGCCAGTACAAGAAAGGTGATGGCCTTATTGAAGGGACAGAGTGCGCTGTGTGCTTGAGTGAGTTCCAAGAAGATGAGACTTTGAGACTTTTGCCAAAGTGTGATCATGCTTTTCATATTCCCTGTATTGATACTTGGCTCACATCTCATACAAATTGCCCCTTGTGCCGTGCCCCCATTATCAAAACCGGCGCAACAGATGTGGCACCACCCGAGCCATTTGTTGCAGCTGATTCAAGTGAGCCAGCAGAGGAAGAAACACCGGTCGAGGTTCTAGACAATACAGGTGAGTCCAGTACTAGTACTGGAGGAGTTGAAGATGAAATTTGTGATGGGATTTTTAGGACTACTGAAGCAGGGGAAGATGATATCATTAACAAACAGATCTGTATTAATGAGGAGGTGGATGATGATGTGGAGGAGCCAAGAAGAAGATCGGTTTCCATGGATTCTTCATCAGCTTTGAAGATTAGTCTTGCCGTTTCTAATGTTGTTGAGGTGGATAAATCAAACCGGGGGATTGAAATTGTTGCCAAGAGAGTTGGGGGAGATCAGAAATTGTCAAGGCAGAAAGGTAGTTCTTCAAGAGGGGCATCTTTACAAAATGGAAAACAAACAATTCAGAAGTCGTCTTCCTGGAATGGCAAGTTCTCATTATGCAGGGACATCAACAACTGTGACTCCGTTGTTCCACTGCGAAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

358

Amino Acids

39.75

Weight (kDa)

5.49

Isoelectric Point (pI)

61.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	137 - 180	2.3e-13	Ring finger domain
zf-RING_11	PF17123	137 - 166	4.4e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	137 - 179	1.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	138 - 180	2.2e-08	RING-H2 zinc finger domain
zf-C3HC4	PF00097	138 - 179	5.3e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33565
fragaria_vesca	FvH4_2g23890
prunus_persica	Prupe.8G066400_v2.0.a1 Prupe.8G066400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291501
rosa_laevigata	RLG00000012111
rosa_multiflora	Rmu_sc0024207.1_g000003 Rmu_sc0026626.1_g000002
rosa_rugosa	Rorug06G0220000
rosa_samantha	Rh6AG332100 Rh6BG339000 Rh6CG345200 Rh6DG332600
rosa_wichuraiana	Rw6G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	574
AccII	CGCG	1 cut(s)	33
AciI	CCGC	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	693
AcuI	CTGAAG	1 cut(s)	741
AfaI	GTAC	6 cut(s)	61, 170, 320, 377, 667, 673
AgeI	ACCGGT	1 cut(s)	631
AgsI	TTSAA	6 cut(s)	401, 606, 686, 835, 893, 954
AhlI	ACTAGT	1 cut(s)	668
AjnI	CCWGG	1 cut(s)	1004
AluBI	AGCT	5 cut(s)	22, 357, 599, 830, 1071
AluI	AGCT	5 cut(s)	22, 357, 599, 830, 1071
Alw26I	GTCTC	3 cut(s)	233, 440, 448
Ama87I	CYCGRG	1 cut(s)	581
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	2 cut(s)	122, 596
ApoI	RAATTY	1 cut(s)	693
AseI	ATTAAT	1 cut(s)	762
AsiGI	ACCGGT	1 cut(s)	631
AspLEI	GCGC	2 cut(s)	416, 563
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	884
AsuHPI	GGTGA	2 cut(s)	398, 668
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	544
BanI	GGYRCC	1 cut(s)	574
BbsI	GAAGAC	1 cut(s)	993
BbvI	GCAGC	2 cut(s)	109, 608
BccI	CCATC	3 cut(s)	368, 383, 695
BceAI	ACGGC	3 cut(s)	89, 522, 833
BciT130I	CCWGG	1 cut(s)	1006
BclI	TGATCA	2 cut(s)	256, 472
BcnI	CCSGG	1 cut(s)	884
BcoDI	GTCTC	3 cut(s)	233, 440, 448
BcuI	ACTAGT	1 cut(s)	668
BfaI	CTAG	2 cut(s)	644, 669
BglII	AGATCT	1 cut(s)	753
BisI	GCNGC	2 cut(s)	123, 597
BlsI	GCNGC	2 cut(s)	124, 598
BmcAI	AGTACT	3 cut(s)	170, 667, 673
Bme1390I	CCNGG	2 cut(s)	884, 1006
Bme18I	GGWCC	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	576, 792
BmrFI	CCNGG	2 cut(s)	884, 1006
BmsI	GCATC	2 cut(s)	119, 971
BpiI	GAAGAC	1 cut(s)	993
BpmI	CTGGAG	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	445
BpuMI	CCSGG	1 cut(s)	884
BsaBI	GATNNNNATC	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	813, 883
BsaWI	WCCGGW	1 cut(s)	631
BsaXI	ACNNNNNCTCC	2 cut(s)	1034, 1064
Bse118I	RCCGGY	2 cut(s)	557, 631
Bse1I	ACTGG	3 cut(s)	373, 663, 679
Bse8I	GATNNNNATC	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	1006
BseDI	CCNNGG	2 cut(s)	813, 883
BseGI	GGATG	2 cut(s)	321, 781
BseJI	GATNNNNATC	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	3 cut(s)	373, 663, 679
BseRI	GAGGAG	5 cut(s)	248, 251, 693, 782, 803
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	2 cut(s)	109, 608
Bsh1236I	CGCG	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	636
BshFI	GGCC	1 cut(s)	393
BshNI	GGYRCC	1 cut(s)	574
BshTI	ACCGGT	1 cut(s)	631
BsiEI	CGRYCG	1 cut(s)	636
BsiHKCI	CYCGRG	1 cut(s)	581
BsiSI	CCGG	3 cut(s)	558, 632, 883
BslFI	GGGAC	2 cut(s)	418, 1046
BsmAI	GTCTC	3 cut(s)	233, 440, 448
BsmFI	GGGAC	2 cut(s)	418, 1046
BsnI	GGCC	1 cut(s)	393
BsoBI	CYCGRG	1 cut(s)	581
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp143I	GATC	7 cut(s)	28, 188, 256, 472, 753, 803, 919
Bsp19I	CCATGG	1 cut(s)	813
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	576, 792
BspQI	GCTCTTC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	574
BsrFI	RCCGGY	2 cut(s)	557, 631
BsrI	ACTGG	3 cut(s)	373, 663, 679
BssAI	RCCGGY	2 cut(s)	557, 631
BssECI	CCNNGG	2 cut(s)	813, 883
BssMI	GATC	7 cut(s)	28, 188, 256, 472, 753, 803, 919
BssT1I	CCWWGG	1 cut(s)	813
Bst2UI	CCWGG	1 cut(s)	1006
Bst4CI	ACNGT	3 cut(s)	71, 331, 1046
Bst6I	CTCTTC	2 cut(s)	249, 279
BstC8I	GCNNGC	2 cut(s)	40, 615
BstDEI	CTNAG	1 cut(s)	267
BstDSI	CCRYGG	1 cut(s)	813
BstF5I	GGATG	2 cut(s)	321, 781
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	416, 563
BstKTI	GATC	7 cut(s)	31, 191, 259, 475, 756, 806, 922
BstMAI	GTCTC	3 cut(s)	233, 440, 448
BstMBI	GATC	7 cut(s)	28, 188, 256, 472, 753, 803, 919
BstMCI	CGRYCG	1 cut(s)	636
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 128, 346, 363, 420, 534
BstNI	CCWGG	1 cut(s)	1006
BstSCI	CCNGG	2 cut(s)	882, 1004
BstSLI	GKGCMC	1 cut(s)	544
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	2 cut(s)	109, 608
BstV2I	GAAGAC	1 cut(s)	993
BstX2I	RGATCY	1 cut(s)	753
BstYI	RGATCY	1 cut(s)	753
BsuRI	GGCC	1 cut(s)	393
BtgI	CCRYGG	1 cut(s)	813
BtsCI	GGATG	2 cut(s)	321, 781
BtsI	GCAGTG	1 cut(s)	1061
BtsIMutI	CAGTG	1 cut(s)	1061
Cac8I	GCNNGC	2 cut(s)	40, 615
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	2 cut(s)	416, 563
Cfr10I	RCCGGY	2 cut(s)	557, 631
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	6 cut(s)	60, 169, 319, 376, 666, 672
CspAI	ACCGGT	1 cut(s)	631
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	5 cut(s)	254, 263, 290, 476, 814
CviQI	GTAC	6 cut(s)	60, 169, 319, 376, 666, 672
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	7 cut(s)	30, 190, 258, 474, 755, 805, 921
DpnII	GATC	7 cut(s)	28, 188, 256, 472, 753, 803, 919
Eam1104I	CTCTTC	2 cut(s)	249, 279
EarI	CTCTTC	2 cut(s)	249, 279
Eco130I	CCWWGG	1 cut(s)	813
Eco32I	GATATC	1 cut(s)	739
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	741
Eco88I	CYCGRG	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	1004
EcoRV	GATATC	1 cut(s)	739
EcoT14I	CCWWGG	1 cut(s)	813
ErhI	CCWWGG	1 cut(s)	813
FaeI	CATG	5 cut(s)	257, 266, 293, 479, 817
FaqI	GGGAC	2 cut(s)	418, 1046
FatI	CATG	5 cut(s)	253, 262, 289, 475, 813
FauNDI	CATATG	1 cut(s)	314
FbaI	TGATCA	2 cut(s)	256, 472
Fnu4HI	GCNGC	2 cut(s)	123, 597
FokI	GGATG	2 cut(s)	308, 788
Fsp4HI	GCNGC	2 cut(s)	123, 597
FspBI	CTAG	2 cut(s)	644, 669
GlaI	GCGC	2 cut(s)	415, 562
GluI	GCNGC	2 cut(s)	123, 597
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	3 cut(s)	558, 632, 883
HhaI	GCGC	2 cut(s)	416, 563
Hin1II	CATG	5 cut(s)	257, 266, 293, 479, 817
Hin6I	GCGC	2 cut(s)	414, 561
HinP1I	GCGC	2 cut(s)	414, 561
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	1069
HinfI	GANTC	6 cut(s)	53, 241, 602, 659, 818, 1049
HpaII	CCGG	3 cut(s)	558, 632, 883
HphI	GGTGA	2 cut(s)	398, 668
Hpy166II	GTNNAC	2 cut(s)	86, 304
Hpy188I	TCNGA	2 cut(s)	924, 993
Hpy188III	TCNNGA	4 cut(s)	230, 254, 644, 954
Hpy8I	GTNNAC	2 cut(s)	86, 304
Hpy99I	CGWCG	2 cut(s)	110, 335
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	3 cut(s)	71, 331, 1046
HpyCH4V	TGCA	6 cut(s)	42, 48, 125, 340, 596, 1029
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 128, 346, 363, 420, 534
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	5 cut(s)	257, 266, 293, 479, 817
HspAI	GCGC	2 cut(s)	414, 561
Ksp22I	TGATCA	2 cut(s)	256, 472
Kzo9I	GATC	7 cut(s)	28, 188, 256, 472, 753, 803, 919
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	2 cut(s)	362, 790
Lsp1109I	GCAGC	2 cut(s)	109, 608
LweI	GCATC	2 cut(s)	119, 971
MaeI	CTAG	2 cut(s)	644, 669
MaeIII	GTNAC	1 cut(s)	1046
MalI	GATC	7 cut(s)	30, 190, 258, 474, 755, 805, 921
MboI	GATC	7 cut(s)	28, 188, 256, 472, 753, 803, 919
MflI	RGATCY	1 cut(s)	753
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	5 cut(s)	523, 693, 894, 926, 987
MlyI	GAGTC	3 cut(s)	235, 668, 1043
MseI	TTAA	3 cut(s)	8, 744, 762
MslI	CAYNNNNRTG	2 cut(s)	252, 365
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	3 cut(s)	558, 632, 883
MspR9I	CCNGG	2 cut(s)	884, 1006
MvaI	CCWGG	1 cut(s)	1006
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	6 cut(s)	39, 128, 346, 363, 420, 534
NciI	CCSGG	1 cut(s)	884
NcoI	CCATGG	1 cut(s)	813
NdeI	CATATG	1 cut(s)	314
NdeII	GATC	7 cut(s)	28, 188, 256, 472, 753, 803, 919
NlaIII	CATG	5 cut(s)	257, 266, 293, 479, 817
NlaIV	GGNNCC	2 cut(s)	576, 792
NmuCI	GTSAC	1 cut(s)	1046
PagI	TCATGA	1 cut(s)	253
PciSI	GCTCTTC	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	53, 602, 818
PfoI	TCCNGGA	1 cut(s)	1004
PinAI	ACCGGT	1 cut(s)	631
PkrI	GCNGC	2 cut(s)	124, 598
PleI	GAGTC	3 cut(s)	235, 667, 1043
PpsI	GAGTC	3 cut(s)	235, 667, 1043
PshBI	ATTAAT	1 cut(s)	762
Psp6I	CCWGG	1 cut(s)	1004
PspGI	CCWGG	1 cut(s)	1004
PspN4I	GGNNCC	2 cut(s)	576, 792
PspPI	GGNCC	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	753
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	6 cut(s)	61, 170, 320, 377, 667, 673
RsaNI	GTAC	6 cut(s)	60, 169, 319, 376, 666, 672
RseI	CAYNNNNRTG	2 cut(s)	252, 365
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	3 cut(s)	8, 744, 762
SatI	GCNGC	2 cut(s)	123, 597
Sau3AI	GATC	7 cut(s)	28, 188, 256, 472, 753, 803, 919
Sau96I	GGNCC	1 cut(s)	293
ScaI	AGTACT	3 cut(s)	170, 667, 673
SchI	GAGTC	3 cut(s)	235, 668, 1043
ScrFI	CCNGG	2 cut(s)	884, 1006
SduI	GDGCHC	1 cut(s)	544
SfaNI	GCATC	2 cut(s)	119, 971
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	2 cut(s)	252, 365
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
SpeI	ACTAGT	1 cut(s)	668
Sse9I	AATT	5 cut(s)	523, 693, 894, 926, 987
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	2 cut(s)	644, 669
StyD4I	CCNGG	2 cut(s)	882, 1004
StyI	CCWWGG	1 cut(s)	813
TaaI	ACNGT	3 cut(s)	71, 331, 1046
TaqI	TCGA	1 cut(s)	636
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	5 cut(s)	523, 693, 894, 926, 987
TatI	WGTACW	4 cut(s)	168, 375, 665, 671
TfiI	GAWTC	3 cut(s)	53, 602, 818
Tru1I	TTAA	3 cut(s)	8, 744, 762
Tru9I	TTAA	3 cut(s)	8, 744, 762
TscAI	CASTG	1 cut(s)	1068
TseFI	GTSAC	1 cut(s)	1046
TseI	GCWGC	2 cut(s)	122, 596
Tsp45I	GTSAC	1 cut(s)	1046
TspDTI	ATGAA	5 cut(s)	236, 297, 473, 705, 813
TspGWI	ACGGA	1 cut(s)	1042
TspRI	CASTG	1 cut(s)	1068
VpaK11BI	GGWCC	1 cut(s)	293
VspI	ATTAAT	1 cut(s)	762
XapI	RAATTY	1 cut(s)	693
XbaI	TCTAGA	1 cut(s)	643
XspI	CTAG	2 cut(s)	644, 669
ZrmI	AGTACT	3 cut(s)	170, 667, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.