AT4G33625

COPI associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012490
Physical Location & Seq
Reverse (-)
16152908 .. 16154742
1835 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33625.3

Sequence Viewer

Length: 603 bp
ATGGATAGGACTGAGGAAATCGAAGAATCCCCCGCCGGACCTTCTTCCGGATCCGCGAAATTGAAGCTCGGAAACAGAGCAGATCCTTTCCTTGTTGTTTGTAGATGCTTCAGCCTCGTTACCTCTCTCATCGCCATTCTCTGTGTTGTCGTTAACGTTCTCGCTGCCGTTCGCTCCTTCCGTGACAGCCACGATCTCTTCGATGGAATATTCCGGTGTTATGCTGTGGTGATTGCTTGTTTTGTTGTTCTCGTTGAGACTGAATGGGGTTTCATTCTCAAATTTTCCAAGGTTCTTGAATACTGGGCTGGTAGAGGAATGCTTCAAATTTTTGTTGCTGTGATGACAAGAGCTTTCCCTGACTATATGACTCAAAAGAAGGATCTCCTGCTTCTACAGAACATCGCAAGCTACTTGCTTCTTGCTTGTGGTGTTATCTATGTCATTTCTGGAGTTCTCTGCATCGGCTTTCTGAAGCGTGCTCGACAGCAAAAGGAAGTTTCAAGAGAACAAGCAGTCAAGGATCTTGAGGAGATAGCCCGACGCAAGGAAGAGTTGGAACAATTGCTCCTGGAGCATCAGAGTAGAGACGAAGACGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPI_assoc

Protein Analysis

200

Amino Acids

22.61

Weight (kDa)

5.8

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33625 AT4G33625 AT4G33625
fragaria_vesca FvH4_2g11740
malus_domestica MD05G1047700.v1.1 MD10G1054500.v1.1
prunus_persica Prupe.8G070100_v2.0.a1
pyrus_communis pycom05g03960 pycom10g04140
rosa_chinensis RchiOBHm_Chr6g0270971
rosa_laevigata RLG00000013757
rosa_multiflora Rmu_sc0010958.1_g000007
rosa_roxburghii Rroxscaffold_7G00197470
rosa_rugosa Rorug06G0057500
rosa_samantha Rh6AG177100 Rh6BG180500 Rh6CG176500 Rh6DG168700
rosa_wichuraiana Rw6G015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 56
AccIII TCCGGA 1 cut(s) 47
AciI CCGC 2 cut(s) 33, 54
AclI AACGTT 1 cut(s) 156
AclWI GGATC 5 cut(s) 45, 58, 77, 390, 531
AcsI RAATTY 2 cut(s) 281, 327
AcuI CTGAAG 2 cut(s) 94, 494
AfiI CCNNNNNNNGG 2 cut(s) 47, 547
AflIII ACRYGT 1 cut(s) 597
AgsI TTSAA 4 cut(s) 64, 299, 326, 504
AjiI CACGTC 1 cut(s) 598
AjnI CCWGG 1 cut(s) 570
AloI GAACNNNNNNTCC 2 cut(s) 552, 584
AluBI AGCT 3 cut(s) 67, 353, 411
AluI AGCT 3 cut(s) 67, 353, 411
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 2 cut(s) 251, 582
AlwI GGATC 5 cut(s) 45, 58, 77, 390, 531
Aor13HI TCCGGA 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 2 cut(s) 281, 327
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 38
BamHI GGATCC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 484
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 572
BcoDI GTCTC 2 cut(s) 251, 582
BfmI CTRYAG 1 cut(s) 395
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 572
Bme18I GGWCC 1 cut(s) 38
BmgBI CACGTC 1 cut(s) 598
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 572
BmrI ACTGGG 1 cut(s) 313
BmsI GCATC 3 cut(s) 95, 471, 586
BmuI ACTGGG 1 cut(s) 313
BpmI CTGGAG 2 cut(s) 471, 593
BpuEI CTTGAG 1 cut(s) 548
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 2 cut(s) 47, 213
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 547
Bse1I ACTGG 1 cut(s) 308
BseAI TCCGGA 1 cut(s) 47
BseBI CCWGG 1 cut(s) 572
BseDI CCNNGG 1 cut(s) 288
BseLI CCNNNNNNNGG 2 cut(s) 47, 547
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 1 cut(s) 545
BseXI GCAGC 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 484
BsiSI CCGG 3 cut(s) 36, 48, 214
BslI CCNNNNNNNGG 2 cut(s) 47, 547
BsmAI GTCTC 2 cut(s) 251, 582
BsmBI CGTCTC 1 cut(s) 582
BsmI GAATGC 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 484
Bsp13I TCCGGA 1 cut(s) 47
Bsp143I GATC 5 cut(s) 50, 82, 193, 382, 523
BspACI CCGC 2 cut(s) 33, 54
BspCNI CTCAG 1 cut(s) 4
BspEI TCCGGA 1 cut(s) 47
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 52
BspPI GGATC 5 cut(s) 45, 58, 77, 390, 531
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 5 cut(s) 50, 82, 193, 382, 523
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 572
Bst6I CTCTTC 2 cut(s) 203, 546
BstC8I GCNNGC 2 cut(s) 409, 480
BstDEI CTNAG 1 cut(s) 12
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 5 cut(s) 53, 85, 196, 385, 526
BstMAI GTCTC 2 cut(s) 251, 582
BstMBI GATC 5 cut(s) 50, 82, 193, 382, 523
BstMWI GCNNNNNNNGC 1 cut(s) 574
BstNI CCWGG 1 cut(s) 572
BstSCI CCNGG 1 cut(s) 570
BstSFI CTRYAG 1 cut(s) 395
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 4 cut(s) 50, 82, 382, 523
BstYI RGATCY 4 cut(s) 50, 82, 382, 523
BtgZI GCGATG 2 cut(s) 115, 388
BtrI CACGTC 1 cut(s) 598
Cac8I GCNNGC 2 cut(s) 409, 480
Cfr13I GGNCC 1 cut(s) 38
CseI GACGC 1 cut(s) 552
CviJI RGCY 8 cut(s) 67, 114, 189, 308, 353, 411, 468, 539
CviKI_1 RGCY 8 cut(s) 67, 114, 189, 308, 353, 411, 468, 539
DdeI CTNAG 1 cut(s) 12
DpnI GATC 5 cut(s) 52, 84, 195, 384, 525
DpnII GATC 5 cut(s) 50, 82, 193, 382, 523
Eam1104I CTCTTC 2 cut(s) 203, 546
EarI CTCTTC 2 cut(s) 203, 546
Eco130I CCWWGG 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 2 cut(s) 94, 494
EcoRII CCWGG 1 cut(s) 570
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 582
FaiI YATR 4 cut(s) 222, 366, 368, 441
FauI CCCGC 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
GsuI CTGGAG 2 cut(s) 471, 593
HapII CCGG 3 cut(s) 36, 48, 214
HgaI GACGC 1 cut(s) 552
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 26, 370
HpaI GTTAAC 1 cut(s) 154
HpaII CCGG 3 cut(s) 36, 48, 214
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 3 cut(s) 71, 474, 582
Hpy188III TCNNGA 5 cut(s) 48, 296, 450, 504, 527
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 546
HpyAV CCTTC 3 cut(s) 51, 187, 373
HpyCH4IV ACGT 2 cut(s) 156, 597
HpyCH4V TGCA 1 cut(s) 462
HpyF10VI GCNNNNNNNGC 1 cut(s) 574
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 2 cut(s) 156, 597
Kpn2I TCCGGA 1 cut(s) 47
KspAI GTTAAC 1 cut(s) 154
Kzo9I GATC 5 cut(s) 50, 82, 193, 382, 523
LmnI GCTCC 3 cut(s) 179, 573, 574
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 3 cut(s) 95, 471, 586
MaeII ACGT 2 cut(s) 156, 597
MaeIII GTNAC 2 cut(s) 118, 182
MalI GATC 5 cut(s) 52, 84, 195, 384, 525
MboI GATC 5 cut(s) 50, 82, 193, 382, 523
MboII GAAGA 4 cut(s) 35, 36, 190, 563
MfeI CAATTG 1 cut(s) 563
MflI RGATCY 4 cut(s) 50, 82, 382, 523
MhlI GDGCHC 1 cut(s) 484
MluCI AATT 4 cut(s) 59, 281, 327, 563
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 537
MnlI CCTC 5 cut(s) 7, 125, 133, 308, 523
MroI TCCGGA 1 cut(s) 47
MseI TTAA 1 cut(s) 153
MspI CCGG 3 cut(s) 36, 48, 214
MspR9I CCNGG 1 cut(s) 572
MunI CAATTG 1 cut(s) 563
Mva1269I GAATGC 1 cut(s) 324
MvaI CCWGG 1 cut(s) 572
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 574
NdeII GATC 5 cut(s) 50, 82, 193, 382, 523
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 2 cut(s) 178, 198
PctI GAATGC 1 cut(s) 324
PfeI GAWTC 1 cut(s) 26
PfoI TCCNGGA 1 cut(s) 570
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
Psp1406I AACGTT 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 570
PspGI CCWGG 1 cut(s) 570
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 38
PsuI RGATCY 4 cut(s) 50, 82, 382, 523
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 5 cut(s) 50, 82, 193, 382, 523
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 1 cut(s) 572
SduI GDGCHC 1 cut(s) 484
SetI ASST 8 cut(s) 43, 69, 125, 159, 294, 355, 413, 600
SfaNI GCATC 3 cut(s) 95, 471, 586
SfcI CTRYAG 1 cut(s) 395
SinI GGWCC 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 4 cut(s) 59, 281, 327, 563
SsiI CCGC 2 cut(s) 33, 54
SspI AATATT 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 570
StyI CCWWGG 1 cut(s) 288
TaiI ACGT 2 cut(s) 159, 600
TaqI TCGA 3 cut(s) 21, 201, 484
TasI AATT 4 cut(s) 59, 281, 327, 563
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 262
TspGWI ACGGA 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 38
XapI RAATTY 2 cut(s) 281, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.