Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012490

Physical Location & Seq

Genomic Coordinates Reverse (-)

10286770 .. 10290278

Gene Structure 3509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G070100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTCGACAAATAATGGAGAGGCGGACGTAGAAGGGAGCGGACGGCGAACATCTCCAACTTCGAGTAACACCAGACTGAGAATGAGAGCCGACCCTTTCTTGGTGTGTTGCAGATGCTTCAGCGTCGTCACTGCTCTCACTGCCGTTCTCTGCATCGTCGTCAATGTCTTCTCTGCCATTGAATCTTTCAAGGATGGATCTGATGTTTTCGACGGGATATTTCGTTGTTATGCTGTTTTGATTGCGATTGTGGTGGTTGTGGCCGAGACCGAATGGGCTTTCTTTATCAAGTTCTGGAAGGTATTGGAGTATTGGGTTGGTAGGGGTATGCTGCAGGTCTTTGTTGCGGTCATGACAAGAGCATTTCCTGATGAGACTGGTACAAGGAAGGAGCTTGTTCTTCTTCAGAACATAGCAAGCTATATGCTCCTTGCTTGTGGTGGGGTCTATATTATTTCGGGAATTCTATGCATTGGCTTCCTGAAACGTGCTCGGCAGAAGACAGAAATTTCAAGGGAGCAAGCGATAAAGGATCTTGAGGACTTGGAGCGGCGAAGGGAAGAACTTGAACACTTGCTTATTGTGGAAAGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_assoc

Protein Analysis

199

Amino Acids

22.36

Weight (kDa)

5.98

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33625 AT4G33625 AT4G33625
fragaria_vesca	FvH4_2g11740
malus_domestica	MD05G1047700.v1.1 MD10G1054500.v1.1
prunus_persica	Prupe.8G070100_v2.0.a1
pyrus_communis	pycom05g03960 pycom10g04140
rosa_chinensis	RchiOBHm_Chr6g0270971
rosa_laevigata	RLG00000013757
rosa_multiflora	Rmu_sc0010958.1_g000007
rosa_roxburghii	Rroxscaffold_7G00197470
rosa_rugosa	Rorug06G0057500
rosa_samantha	Rh6AG177100 Rh6BG180500 Rh6CG176500 Rh6DG168700
rosa_wichuraiana	Rw6G015100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AccBSI	CCGCTC	2 cut(s)	39, 550
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	4 cut(s)	23, 39, 347, 550
AclWI	GGATC	2 cut(s)	205, 540
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	462, 507
AcuI	CTGAAG	2 cut(s)	103, 389
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	4 cut(s)	182, 190, 513, 569
AluBI	AGCT	2 cut(s)	394, 420
AluI	AGCT	2 cut(s)	394, 420
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	2 cut(s)	260, 368
AlwI	GGATC	2 cut(s)	205, 540
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	331
ApoI	RAATTY	2 cut(s)	462, 507
BbsI	GAAGAC	2 cut(s)	160, 506
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	2 cut(s)	59, 128
BcoDI	GTCTC	2 cut(s)	260, 368
BfmI	CTRYAG	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	325
BisI	GCNGC	2 cut(s)	332, 551
BlsI	GCNGC	2 cut(s)	333, 552
BmsI	GCATC	2 cut(s)	104, 162
BpiI	GAAGAC	2 cut(s)	160, 506
BpuEI	CTTGAG	1 cut(s)	557
BsaI	GGTCTC	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	382
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	318
BshFI	GGCC	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	493
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	2 cut(s)	260, 368
BsnI	GGCC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp143I	GATC	2 cut(s)	197, 532
BspACI	CCGC	4 cut(s)	23, 39, 347, 550
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	351
BspMAI	CTGCAG	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	2 cut(s)	205, 540
BspTNI	GGTCTC	1 cut(s)	260
BsrBI	CCGCTC	2 cut(s)	39, 550
BsrI	ACTGG	1 cut(s)	382
BssMI	GATC	2 cut(s)	197, 532
BstC8I	GCNNGC	2 cut(s)	418, 522
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	2 cut(s)	200, 535
BstMAI	GTCTC	2 cut(s)	260, 368
BstMBI	GATC	2 cut(s)	197, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	332
BstV1I	GCAGC	1 cut(s)	318
BstV2I	GAAGAC	2 cut(s)	160, 506
BstX2I	RGATCY	2 cut(s)	197, 532
BstYI	RGATCY	2 cut(s)	197, 532
BsuRI	GGCC	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	199
BtsI	GCAGTG	2 cut(s)	129, 138
BtsIMutI	CAGTG	2 cut(s)	129, 138
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	2 cut(s)	418, 522
CciI	TCATGA	1 cut(s)	351
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	6 cut(s)	89, 263, 278, 394, 420, 477
CviKI_1	RGCY	6 cut(s)	89, 263, 278, 394, 420, 477
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	199, 534
DpnII	GATC	2 cut(s)	197, 532
EaeI	YGGCCR	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	260
Eco57I	CTGAAG	2 cut(s)	103, 389
EcoRI	GAATTC	1 cut(s)	462
EcoT22I	ATGCAT	1 cut(s)	473
FaeI	CATG	1 cut(s)	355
FaiI	YATR	8 cut(s)	231, 329, 353, 413, 423, 425, 450, 469
FatI	CATG	1 cut(s)	351
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	332, 551
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	332, 551
GluI	GCNGC	2 cut(s)	332, 551
HaeIII	GGCC	1 cut(s)	263
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	355
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	202, 408
Hpy188III	TCNNGA	6 cut(s)	295, 352, 368, 459, 481, 536
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	3 cut(s)	128, 161, 215
HpyAV	CCTTC	4 cut(s)	26, 292, 382, 549
HpyCH4IV	ACGT	2 cut(s)	27, 487
HpyCH4V	TGCA	4 cut(s)	111, 153, 334, 471
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	2 cut(s)	27, 487
Hsp92II	CATG	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	197, 532
LmnI	GCTCC	5 cut(s)	36, 391, 432, 517, 547
LpnPI	CCDG	6 cut(s)	85, 280, 320, 363, 381, 494
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	2 cut(s)	104, 162
MaeII	ACGT	2 cut(s)	27, 487
MaeIII	GTNAC	2 cut(s)	65, 127
MalI	GATC	2 cut(s)	199, 534
MbiI	CCGCTC	2 cut(s)	39, 550
MboI	GATC	2 cut(s)	197, 532
MboII	GAAGA	5 cut(s)	160, 392, 395, 511, 572
MflI	RGATCY	2 cut(s)	197, 532
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	2 cut(s)	462, 507
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	2 cut(s)	13, 532
Mph1103I	ATGCAT	1 cut(s)	473
MseI	TTAA	1 cut(s)	595
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	2 cut(s)	197, 532
NlaIII	CATG	1 cut(s)	355
NmeAIII	GCCGAG	2 cut(s)	289, 472
NmuCI	GTSAC	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	473
PagI	TCATGA	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	333, 552
PstI	CTGCAG	1 cut(s)	336
PsuI	RGATCY	2 cut(s)	197, 532
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	595
SatI	GCNGC	2 cut(s)	332, 551
Sau3AI	GATC	2 cut(s)	197, 532
SduI	GDGCHC	1 cut(s)	493
SetI	ASST	6 cut(s)	30, 303, 339, 396, 422, 490
SfaNI	GCATC	2 cut(s)	104, 162
SfcI	CTRYAG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	2 cut(s)	462, 507
SsiI	CCGC	4 cut(s)	23, 39, 347, 550
TaiI	ACGT	2 cut(s)	30, 490
TaqI	TCGA	3 cut(s)	5, 62, 210
TaqII	GACCGA	1 cut(s)	284
TasI	AATT	2 cut(s)	462, 507
TauI	GCSGC	1 cut(s)	553
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	595
Tru9I	TTAA	1 cut(s)	595
TscAI	CASTG	2 cut(s)	136, 145
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	127
TspRI	CASTG	2 cut(s)	136, 145
XapI	RAATTY	2 cut(s)	462, 507
XmiI	GTMKAC	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.