Rroxscaffold_7G00197470

COPI associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012490
Physical Location & Seq
Reverse (-)
41805491 .. 41807725
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197470.1

Sequence Viewer

Length: 600 bp
ATGGAGGACGGAGGAGGAGGACGAGAGGGCGAGCGGAATCGAACGAGTCCGTCGAGTAGTGGCAGCAGACTGAGAGTCAGAGCCGACCCTTTCTTGGTTGTCTGCCGCTGCTTCAGCGTCATCACGGCTCTCACTGCCATTCTCTGTATCGTCGTCAACGTCCTCTCCGCCATTCGATCCTTCACGGACGGATCTGATATTTTCGATGGTATATTTCGGTGTTATGCTGTTATCATTGCCTTTTTTGTGGTTGTGGCCGAGACCGAGTGGGCATTCGTTATGAAGTTCTGGAAGGTACTGGAGTATTGGGTTGGTAGGGGTATGCTGCAGATCTTTGTTGCAGTCATGACAAGAGCTTTTCCTGACTATACTGGTGCTAATGATGCACTTGTTCTTCTCCAAAACATAGCAAGCTATATGCTTCTTGCTTGTGGCGTGCTCTATGTTATTTCGGGAATTTTATGTATTGGCTTCCTCAAACGTGCTCGCCAGCAGAAAGAAATTTCAAGGGATCAAGCCATTAAGGATCTTGAGGAATTGGAGCGGCGGAGGAAGAACTTGAATACTTGCTTCTTGAGGAAAGAGCCTAAAACGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPI_assoc

Protein Analysis

199

Amino Acids

22.47

Weight (kDa)

9.19

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33625 AT4G33625 AT4G33625
fragaria_vesca FvH4_2g11740
malus_domestica MD05G1047700.v1.1 MD10G1054500.v1.1
prunus_persica Prupe.8G070100_v2.0.a1
pyrus_communis pycom05g03960 pycom10g04140
rosa_chinensis RchiOBHm_Chr6g0270971
rosa_laevigata RLG00000013757
rosa_multiflora Rmu_sc0010958.1_g000007
rosa_roxburghii Rroxscaffold_7G00197470
rosa_rugosa Rorug06G0057500
rosa_samantha Rh6AG177100 Rh6BG180500 Rh6CG176500 Rh6DG168700
rosa_wichuraiana Rw6G015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 34, 544
AciI CCGC 5 cut(s) 34, 106, 168, 544, 547
AclWI GGATC 4 cut(s) 171, 199, 519, 534
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 2 cut(s) 456, 501
AcuI CTGAAG 1 cut(s) 97
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 2 cut(s) 507, 562
AhdI GACNNNNNGTC 1 cut(s) 74
AluBI AGCT 2 cut(s) 356, 414
AluI AGCT 2 cut(s) 356, 414
Alw21I GWGCWC 2 cut(s) 441, 487
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 4 cut(s) 171, 199, 519, 534
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 3 cut(s) 63, 108, 325
ApoI RAATTY 2 cut(s) 456, 501
BaeI ACNNNNGTAYC 2 cut(s) 287, 320
Bbv12I GWGCWC 2 cut(s) 441, 487
BbvI GCAGC 3 cut(s) 75, 95, 312
BccI CCATC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 326
BglII AGATCT 1 cut(s) 330
BisI GCNGC 5 cut(s) 64, 106, 109, 326, 545
BlsI GCNGC 5 cut(s) 65, 107, 110, 327, 546
BmeRI GACNNNNNGTC 1 cut(s) 74
BmsI GCATC 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 320
BpuEI CTTGAG 2 cut(s) 551, 595
BsaI GGTCTC 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 303, 376
Bse3DI GCAATG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 2 cut(s) 303, 376
BseRI GAGGAG 2 cut(s) 27, 30
BseXI GCAGC 3 cut(s) 75, 95, 312
BshFI GGCC 1 cut(s) 257
BsiHKAI GWGCWC 2 cut(s) 441, 487
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 1 cut(s) 257
Bso31I GGTCTC 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 441, 487
Bsp143I GATC 5 cut(s) 176, 191, 330, 511, 526
BspACI CCGC 5 cut(s) 34, 106, 168, 544, 547
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 63
BspHI TCATGA 1 cut(s) 345
BspMAI CTGCAG 1 cut(s) 330
BspPI GGATC 4 cut(s) 171, 199, 519, 534
BspTNI GGTCTC 1 cut(s) 254
BsrBI CCGCTC 2 cut(s) 34, 544
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 2 cut(s) 303, 376
BssMI GATC 5 cut(s) 176, 191, 330, 511, 526
BstC8I GCNNGC 5 cut(s) 32, 412, 437, 487, 491
BstDEI CTNAG 1 cut(s) 71
BstKTI GATC 5 cut(s) 179, 194, 333, 514, 529
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 5 cut(s) 176, 191, 330, 511, 526
BstMWI GCNNNNNNNGC 3 cut(s) 114, 134, 383
BstSFI CTRYAG 1 cut(s) 326
BstV1I GCAGC 3 cut(s) 75, 95, 312
BstX2I RGATCY 3 cut(s) 191, 330, 526
BstYI RGATCY 3 cut(s) 191, 330, 526
BsuRI GGCC 1 cut(s) 257
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 5 cut(s) 32, 412, 437, 487, 491
CciI TCATGA 1 cut(s) 345
CseI GACGC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 296
CviAII CATG 1 cut(s) 346
CviJI RGCY 8 cut(s) 83, 128, 257, 356, 414, 471, 518, 586
CviKI_1 RGCY 8 cut(s) 83, 128, 257, 356, 414, 471, 518, 586
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 1 cut(s) 71
DpnI GATC 5 cut(s) 178, 193, 332, 513, 528
DpnII GATC 5 cut(s) 176, 191, 330, 511, 526
DriI GACNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 255
Eam1105I GACNNNNNGTC 1 cut(s) 74
EciI GGCGGA 2 cut(s) 157, 562
Eco31I GGTCTC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 97
FaeI CATG 1 cut(s) 349
FatI CATG 1 cut(s) 345
Fnu4HI GCNGC 5 cut(s) 64, 106, 109, 326, 545
Fsp4HI GCNGC 5 cut(s) 64, 106, 109, 326, 545
GluI GCNGC 5 cut(s) 64, 106, 109, 326, 545
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 1 cut(s) 257
HgaI GACGC 1 cut(s) 106
Hin1II CATG 1 cut(s) 349
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 3 cut(s) 37, 46, 75
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 80, 196
Hpy188III TCNNGA 6 cut(s) 289, 346, 362, 453, 530, 574
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 2 cut(s) 55, 155
HpyAV CCTTC 2 cut(s) 190, 286
HpyCH4IV ACGT 2 cut(s) 159, 481
HpyCH4V TGCA 3 cut(s) 328, 341, 386
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 134, 383
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 2 cut(s) 159, 481
Hsp92II CATG 1 cut(s) 349
Kzo9I GATC 5 cut(s) 176, 191, 330, 511, 526
LmnI GCTCC 1 cut(s) 541
LpnPI CCDG 5 cut(s) 274, 284, 357, 375, 503
Lsp1109I GCAGC 3 cut(s) 75, 95, 312
LweI GCATC 1 cut(s) 373
MaeII ACGT 2 cut(s) 159, 481
MalI GATC 5 cut(s) 178, 193, 332, 513, 528
MbiI CCGCTC 2 cut(s) 34, 544
MboI GATC 5 cut(s) 176, 191, 330, 511, 526
MboII GAAGA 2 cut(s) 386, 565
MflI RGATCY 3 cut(s) 191, 330, 526
MhlI GDGCHC 2 cut(s) 441, 487
MluCI AATT 3 cut(s) 456, 501, 536
MlyI GAGTC 2 cut(s) 55, 84
MnlI CCTC 9 cut(s) 5, 8, 11, 19, 173, 485, 526, 543, 570
MseI TTAA 1 cut(s) 522
MspA1I CMGCKG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 272
MwoI GCNNNNNNNGC 3 cut(s) 114, 134, 383
NdeII GATC 5 cut(s) 176, 191, 330, 511, 526
NlaIII CATG 1 cut(s) 349
NmeAIII GCCGAG 1 cut(s) 283
PagI TCATGA 1 cut(s) 345
PcsI WCGNNNNNNNCGW 2 cut(s) 50, 156
PctI GAATGC 1 cut(s) 272
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 5 cut(s) 65, 107, 110, 327, 546
PleI GAGTC 2 cut(s) 54, 83
PpsI GAGTC 2 cut(s) 54, 83
PstI CTGCAG 1 cut(s) 330
PsuI RGATCY 3 cut(s) 191, 330, 526
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 5 cut(s) 64, 106, 109, 326, 545
Sau3AI GATC 5 cut(s) 176, 191, 330, 511, 526
SchI GAGTC 2 cut(s) 55, 84
SduI GDGCHC 2 cut(s) 441, 487
SetI ASST 5 cut(s) 162, 297, 358, 416, 484
SfaNI GCATC 1 cut(s) 373
SfcI CTRYAG 1 cut(s) 326
SmlI CTYRAG 2 cut(s) 530, 574
SmoI CTYRAG 2 cut(s) 530, 574
Sse9I AATT 3 cut(s) 456, 501, 536
SsiI CCGC 5 cut(s) 34, 106, 168, 544, 547
TaiI ACGT 2 cut(s) 162, 484
TaqI TCGA 4 cut(s) 40, 53, 175, 204
TaqII GACCGA 1 cut(s) 278
TasI AATT 3 cut(s) 456, 501, 536
TauI GCSGC 2 cut(s) 108, 547
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 1 cut(s) 139
TseI GCWGC 3 cut(s) 63, 108, 325
TspDTI ATGAA 1 cut(s) 296
TspGWI ACGGA 4 cut(s) 24, 39, 200, 204
TspRI CASTG 1 cut(s) 139
XapI RAATTY 2 cut(s) 456, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.