Rh6BG180500

COPI associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012490
Physical Location & Seq
Forward (+)
31003132 .. 31005387
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG180500.1

Sequence Viewer

Length: 585 bp
ATGGAGGACGGAGGAGGAGAGGGCGAGCGGAATCGAACGAGTCCGTCGAGTAGTAGCAGCAGACTGAGAGTCAGAGCCGACCCTTTCTTGGTGGTGTGCCGCTGCTTCAGCGTCATCACTGCTCTCACTGCCATTCTCTGTATCGTCGTCAACGTCCTCTCCGCCATTCGATCCTTCACGGACGGATCTGATATTTTCGATGGTATATTTCGGTGTTATGCTGTTATCATTGCCTTTTTTGTGGTTGTGGCCGAGACCGAGTGGGCATTCGTTTTGAAGTTCTGGAAGGTATTGGAGTATTGGGTTGGTAGGGGTATGCTGCAGATCTTTGTTGCGGTCATGACAAGAGCTTTTCCTAACTATACCGGTGCTAATGATGCGCTTGTTCTTCTCCAGAACATAGCAAGCTATATGCTTCTTGCTTGTGGCGTGCTCTATGTTATTTCGGGAATTTTATGTATTGGCTTCCTCAAACGTGCTCGCCAGCAGAAAGAAATTTCAAGGGATCAAGCAATTAAGGATCTTGAGGAATTGGAGCGGCGGAGGGAAGAACTTGAATACTTGCTTATTGAGGAAAGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPI_assoc

Protein Analysis

194

Amino Acids

21.92

Weight (kDa)

5.67

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33625 AT4G33625 AT4G33625
fragaria_vesca FvH4_2g11740
malus_domestica MD05G1047700.v1.1 MD10G1054500.v1.1
prunus_persica Prupe.8G070100_v2.0.a1
pyrus_communis pycom05g03960 pycom10g04140
rosa_chinensis RchiOBHm_Chr6g0270971
rosa_laevigata RLG00000013757
rosa_multiflora Rmu_sc0010958.1_g000007
rosa_roxburghii Rroxscaffold_7G00197470
rosa_rugosa Rorug06G0057500
rosa_samantha Rh6AG177100 Rh6BG180500 Rh6CG176500 Rh6DG168700
rosa_wichuraiana Rw6G015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 28, 538
AciI CCGC 6 cut(s) 28, 100, 162, 335, 538, 541
AclWI GGATC 4 cut(s) 165, 193, 513, 528
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 2 cut(s) 450, 495
AcuI CTGAAG 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 88
AgeI ACCGGT 1 cut(s) 365
AgsI TTSAA 3 cut(s) 277, 501, 557
AhdI GACNNNNNGTC 1 cut(s) 68
AluBI AGCT 2 cut(s) 350, 408
AluI AGCT 2 cut(s) 350, 408
Alw21I GWGCWC 2 cut(s) 435, 481
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 4 cut(s) 165, 193, 513, 528
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 3 cut(s) 57, 102, 319
ApoI RAATTY 2 cut(s) 450, 495
AsiGI ACCGGT 1 cut(s) 365
AspLEI GCGC 1 cut(s) 382
Bbv12I GWGCWC 2 cut(s) 435, 481
BbvI GCAGC 3 cut(s) 69, 89, 306
BccI CCATC 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 320
BglII AGATCT 1 cut(s) 324
BisI GCNGC 5 cut(s) 58, 100, 103, 320, 539
BlsI GCNGC 5 cut(s) 59, 101, 104, 321, 540
BmeRI GACNNNNNGTC 1 cut(s) 68
BmsI GCATC 1 cut(s) 367
BpmI CTGGAG 1 cut(s) 377
BpuEI CTTGAG 1 cut(s) 545
BsaI GGTCTC 1 cut(s) 248
BsaWI WCCGGW 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 56
BseRI GAGGAG 2 cut(s) 27, 30
BseXI GCAGC 3 cut(s) 69, 89, 306
BshFI GGCC 1 cut(s) 251
BshTI ACCGGT 1 cut(s) 365
BsiHKAI GWGCWC 2 cut(s) 435, 481
BsiSI CCGG 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 1 cut(s) 251
Bso31I GGTCTC 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 435, 481
Bsp143I GATC 5 cut(s) 170, 185, 324, 505, 520
BspACI CCGC 6 cut(s) 28, 100, 162, 335, 538, 541
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 57
BspHI TCATGA 1 cut(s) 339
BspMAI CTGCAG 1 cut(s) 324
BspPI GGATC 4 cut(s) 165, 193, 513, 528
BspTNI GGTCTC 1 cut(s) 248
BsrBI CCGCTC 2 cut(s) 28, 538
BsrDI GCAATG 1 cut(s) 228
BsrFI RCCGGY 1 cut(s) 365
BssAI RCCGGY 1 cut(s) 365
BssMI GATC 5 cut(s) 170, 185, 324, 505, 520
BstC8I GCNNGC 5 cut(s) 26, 406, 431, 481, 485
BstDEI CTNAG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 5 cut(s) 173, 188, 327, 508, 523
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 5 cut(s) 170, 185, 324, 505, 520
BstMWI GCNNNNNNNGC 3 cut(s) 108, 128, 377
BstSFI CTRYAG 1 cut(s) 320
BstV1I GCAGC 3 cut(s) 69, 89, 306
BstX2I RGATCY 3 cut(s) 185, 324, 520
BstYI RGATCY 3 cut(s) 185, 324, 520
BsuRI GGCC 1 cut(s) 251
BtsI GCAGTG 2 cut(s) 117, 126
BtsIMutI CAGTG 2 cut(s) 117, 126
Cac8I GCNNGC 5 cut(s) 26, 406, 431, 481, 485
CciI TCATGA 1 cut(s) 339
CfoI GCGC 1 cut(s) 382
Cfr10I RCCGGY 1 cut(s) 365
CseI GACGC 1 cut(s) 100
CspAI ACCGGT 1 cut(s) 365
CviAII CATG 1 cut(s) 340
CviJI RGCY 6 cut(s) 77, 251, 350, 408, 465, 581
CviKI_1 RGCY 6 cut(s) 77, 251, 350, 408, 465, 581
DdeI CTNAG 1 cut(s) 65
DpnI GATC 5 cut(s) 172, 187, 326, 507, 522
DpnII GATC 5 cut(s) 170, 185, 324, 505, 520
DriI GACNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 249
Eam1105I GACNNNNNGTC 1 cut(s) 68
EciI GGCGGA 2 cut(s) 151, 556
Eco31I GGTCTC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 91
FaeI CATG 1 cut(s) 343
FatI CATG 1 cut(s) 339
Fnu4HI GCNGC 5 cut(s) 58, 100, 103, 320, 539
Fsp4HI GCNGC 5 cut(s) 58, 100, 103, 320, 539
GlaI GCGC 1 cut(s) 381
GluI GCNGC 5 cut(s) 58, 100, 103, 320, 539
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 1 cut(s) 251
HapII CCGG 1 cut(s) 366
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 382
Hin1II CATG 1 cut(s) 343
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 3 cut(s) 31, 40, 69
HpaII CCGG 1 cut(s) 366
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 74, 190
Hpy188III TCNNGA 5 cut(s) 283, 340, 394, 447, 524
Hpy8I GTNNAC 1 cut(s) 151
Hpy99I CGWCG 2 cut(s) 49, 149
HpyAV CCTTC 2 cut(s) 184, 280
HpyCH4IV ACGT 2 cut(s) 153, 475
HpyCH4V TGCA 1 cut(s) 322
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 128, 377
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 2 cut(s) 153, 475
Hsp92II CATG 1 cut(s) 343
HspAI GCGC 1 cut(s) 380
Kzo9I GATC 5 cut(s) 170, 185, 324, 505, 520
LmnI GCTCC 1 cut(s) 535
LpnPI CCDG 4 cut(s) 268, 379, 407, 497
Lsp1109I GCAGC 3 cut(s) 69, 89, 306
LweI GCATC 1 cut(s) 367
MaeII ACGT 2 cut(s) 153, 475
MalI GATC 5 cut(s) 172, 187, 326, 507, 522
MbiI CCGCTC 2 cut(s) 28, 538
MboI GATC 5 cut(s) 170, 185, 324, 505, 520
MboII GAAGA 2 cut(s) 380, 560
MflI RGATCY 3 cut(s) 185, 324, 520
MhlI GDGCHC 2 cut(s) 435, 481
MluCI AATT 4 cut(s) 450, 495, 513, 530
MlyI GAGTC 2 cut(s) 49, 78
MnlI CCTC 8 cut(s) 5, 8, 13, 167, 479, 520, 537, 565
MseI TTAA 1 cut(s) 516
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 266
MwoI GCNNNNNNNGC 3 cut(s) 108, 128, 377
NdeII GATC 5 cut(s) 170, 185, 324, 505, 520
NlaIII CATG 1 cut(s) 343
NmeAIII GCCGAG 1 cut(s) 277
PagI TCATGA 1 cut(s) 339
PcsI WCGNNNNNNNCGW 2 cut(s) 44, 150
PctI GAATGC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 31
PinAI ACCGGT 1 cut(s) 365
PkrI GCNGC 5 cut(s) 59, 101, 104, 321, 540
PleI GAGTC 2 cut(s) 48, 77
PpsI GAGTC 2 cut(s) 48, 77
PstI CTGCAG 1 cut(s) 324
PsuI RGATCY 3 cut(s) 185, 324, 520
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 5 cut(s) 58, 100, 103, 320, 539
Sau3AI GATC 5 cut(s) 170, 185, 324, 505, 520
SchI GAGTC 2 cut(s) 49, 78
SduI GDGCHC 2 cut(s) 435, 481
SetI ASST 5 cut(s) 156, 291, 352, 410, 478
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 4 cut(s) 450, 495, 513, 530
SsiI CCGC 6 cut(s) 28, 100, 162, 335, 538, 541
TaiI ACGT 2 cut(s) 156, 478
TaqI TCGA 4 cut(s) 34, 47, 169, 198
TaqII GACCGA 1 cut(s) 272
TasI AATT 4 cut(s) 450, 495, 513, 530
TauI GCSGC 2 cut(s) 102, 541
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 2 cut(s) 124, 133
TseI GCWGC 3 cut(s) 57, 102, 319
TspGWI ACGGA 4 cut(s) 24, 33, 194, 198
TspRI CASTG 2 cut(s) 124, 133
XapI RAATTY 2 cut(s) 450, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.