Rmu_sc0010958.1_g000007

COPI associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010958.1
OG0012490
Physical Location & Seq
Forward (+)
15577 .. 18716
3140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010958.1_g000007.1.cds

Sequence Viewer

Length: 606 bp
atggaagacggaggaggagcaggagcaggagagggcgagcggaatcgaacgagtccgtcgagtagtagcagcagactgagagtcagagccgaccctttcttgggggtgtgccgctgcttcagcgtcatcactgctctcactgccattctctgtatcgtcgtcaacgtcctctcccccattcgatccttcacgaacggatctgatattttcgatggtatatttcggtgttatgctgttatcattgccttttttgtggttgtggctgagaccgagtgggcattcgttatgaagttctggaaggttcgtttcgtattggagtattgggttggtaggggtatgctgcagatctttgttgcggtcatgacaagagcttttcctgactatactggtgctaatgatgcgcttgttcttctccagaacatagcaagctatatgcttcttgcttgtggcgcgctctatgttatttcgggaattttatgtattggcttcctcaaacgtgctcgccagaagaaagaaatttcaagggatcaagcaattaaggatcttgaggaattggagcggcggagggaagaacttgaatacttgcttcttgaggaaagagcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPI_assoc

Protein Analysis

201

Amino Acids

22.56

Weight (kDa)

7.54

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33625 AT4G33625 AT4G33625
fragaria_vesca FvH4_2g11740
malus_domestica MD05G1047700.v1.1 MD10G1054500.v1.1
prunus_persica Prupe.8G070100_v2.0.a1
pyrus_communis pycom05g03960 pycom10g04140
rosa_chinensis RchiOBHm_Chr6g0270971
rosa_laevigata RLG00000013757
rosa_multiflora Rmu_sc0010958.1_g000007
rosa_roxburghii Rroxscaffold_7G00197470
rosa_rugosa Rorug06G0057500
rosa_samantha Rh6AG177100 Rh6BG180500 Rh6CG176500 Rh6DG168700
rosa_wichuraiana Rw6G015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 40, 559
AccII CGCG 1 cut(s) 452
AciI CCGC 5 cut(s) 40, 112, 356, 559, 562
AclWI GGATC 4 cut(s) 177, 205, 534, 549
AcsI RAATTY 2 cut(s) 471, 516
AcuI CTGAAG 1 cut(s) 103
AfiI CCNNNNNNNGG 2 cut(s) 100, 101
AgsI TTSAA 2 cut(s) 522, 578
AhdI GACNNNNNGTC 1 cut(s) 80
AluBI AGCT 2 cut(s) 371, 429
AluI AGCT 2 cut(s) 371, 429
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 4 cut(s) 177, 205, 534, 549
ApeKI GCWGC 3 cut(s) 69, 114, 340
ApoI RAATTY 2 cut(s) 471, 516
AspLEI GCGC 3 cut(s) 403, 452, 454
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 502
BbvI GCAGC 3 cut(s) 81, 101, 327
BccI CCATC 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 341
BglII AGATCT 1 cut(s) 345
BisI GCNGC 5 cut(s) 70, 112, 115, 341, 560
BlsI GCNGC 5 cut(s) 71, 113, 116, 342, 561
BmeRI GACNNNNNGTC 1 cut(s) 80
BmsI GCATC 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 566
BsaI GGTCTC 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 101
Bse1I ACTGG 1 cut(s) 391
Bse3DI GCAATG 1 cut(s) 240
BseLI CCNNNNNNNGG 2 cut(s) 100, 101
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 2 cut(s) 68, 255
BseNI ACTGG 1 cut(s) 391
BsePI GCGCGC 1 cut(s) 450
BseRI GAGGAG 2 cut(s) 27, 30
BseXI GCAGC 3 cut(s) 81, 101, 327
Bsh1236I CGCG 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 502
BslI CCNNNNNNNGG 2 cut(s) 100, 101
BsmAI GTCTC 1 cut(s) 260
BsmI GAATGC 1 cut(s) 278
Bso31I GGTCTC 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 5 cut(s) 182, 197, 345, 526, 541
BspACI CCGC 5 cut(s) 40, 112, 356, 559, 562
BspCNI CTCAG 2 cut(s) 69, 256
BspFNI CGCG 1 cut(s) 452
BspHI TCATGA 1 cut(s) 360
BspMAI CTGCAG 1 cut(s) 345
BspPI GGATC 4 cut(s) 177, 205, 534, 549
BspTNI GGTCTC 1 cut(s) 260
BsrBI CCGCTC 2 cut(s) 40, 559
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 1 cut(s) 391
BssHII GCGCGC 1 cut(s) 450
BssMI GATC 5 cut(s) 182, 197, 345, 526, 541
BstC8I GCNNGC 4 cut(s) 38, 427, 452, 502
BstDEI CTNAG 2 cut(s) 77, 264
BstFNI CGCG 1 cut(s) 452
BstHHI GCGC 3 cut(s) 403, 452, 454
BstKTI GATC 5 cut(s) 185, 200, 348, 529, 544
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 5 cut(s) 182, 197, 345, 526, 541
BstMWI GCNNNNNNNGC 4 cut(s) 120, 140, 398, 449
BstSFI CTRYAG 1 cut(s) 341
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 3 cut(s) 81, 101, 327
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 3 cut(s) 197, 345, 541
BstYI RGATCY 3 cut(s) 197, 345, 541
BtsI GCAGTG 2 cut(s) 129, 138
BtsIMutI CAGTG 2 cut(s) 129, 138
Cac8I GCNNGC 4 cut(s) 38, 427, 452, 502
CciI TCATGA 1 cut(s) 360
CfoI GCGC 3 cut(s) 403, 452, 454
CseI GACGC 1 cut(s) 112
CviAII CATG 1 cut(s) 361
CviJI RGCY 6 cut(s) 89, 263, 371, 429, 486, 602
CviKI_1 RGCY 6 cut(s) 89, 263, 371, 429, 486, 602
DdeI CTNAG 2 cut(s) 77, 264
DpnI GATC 5 cut(s) 184, 199, 347, 528, 543
DpnII GATC 5 cut(s) 182, 197, 345, 526, 541
DriI GACNNNNNGTC 1 cut(s) 80
Eam1105I GACNNNNNGTC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 577
Eco31I GGTCTC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 103
FaeI CATG 1 cut(s) 364
FatI CATG 1 cut(s) 360
Fnu4HI GCNGC 5 cut(s) 70, 112, 115, 341, 560
Fsp4HI GCNGC 5 cut(s) 70, 112, 115, 341, 560
GlaI GCGC 3 cut(s) 402, 451, 453
GluI GCNGC 5 cut(s) 70, 112, 115, 341, 560
GsuI CTGGAG 1 cut(s) 398
HgaI GACGC 1 cut(s) 112
HhaI GCGC 3 cut(s) 403, 452, 454
Hin1II CATG 1 cut(s) 364
Hin6I GCGC 3 cut(s) 401, 450, 452
HinP1I GCGC 3 cut(s) 401, 450, 452
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 3 cut(s) 43, 52, 81
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 86, 202
Hpy188III TCNNGA 8 cut(s) 190, 295, 361, 377, 415, 468, 545, 590
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 2 cut(s) 61, 161
HpyAV CCTTC 2 cut(s) 196, 292
HpyCH4IV ACGT 2 cut(s) 165, 496
HpyCH4V TGCA 1 cut(s) 343
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 140, 398, 449
HpyF3I CTNAG 2 cut(s) 77, 264
HpySE526I ACGT 2 cut(s) 165, 496
Hsp92II CATG 1 cut(s) 364
HspAI GCGC 3 cut(s) 401, 450, 452
Kzo9I GATC 5 cut(s) 182, 197, 345, 526, 541
LmnI GCTCC 3 cut(s) 17, 23, 556
LpnPI CCDG 7 cut(s) 6, 12, 280, 372, 390, 428, 518
Lsp1109I GCAGC 3 cut(s) 81, 101, 327
LweI GCATC 1 cut(s) 388
MaeII ACGT 2 cut(s) 165, 496
MalI GATC 5 cut(s) 184, 199, 347, 528, 543
MbiI CCGCTC 2 cut(s) 40, 559
MboI GATC 5 cut(s) 182, 197, 345, 526, 541
MboII GAAGA 4 cut(s) 17, 401, 520, 581
MflI RGATCY 3 cut(s) 197, 345, 541
MhlI GDGCHC 1 cut(s) 502
MluCI AATT 4 cut(s) 471, 516, 534, 551
MlyI GAGTC 2 cut(s) 61, 90
MnlI CCTC 8 cut(s) 5, 8, 25, 179, 500, 541, 558, 586
MseI TTAA 1 cut(s) 537
MspA1I CMGCKG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 278
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 4 cut(s) 120, 140, 398, 449
NdeII GATC 5 cut(s) 182, 197, 345, 526, 541
NlaIII CATG 1 cut(s) 364
PagI TCATGA 1 cut(s) 360
PauI GCGCGC 1 cut(s) 450
PcsI WCGNNNNNNNCGW 2 cut(s) 56, 162
PctI GAATGC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 5 cut(s) 71, 113, 116, 342, 561
PleI GAGTC 2 cut(s) 60, 89
PpsI GAGTC 2 cut(s) 60, 89
PstI CTGCAG 1 cut(s) 345
PsuI RGATCY 3 cut(s) 197, 345, 541
PteI GCGCGC 1 cut(s) 450
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 5 cut(s) 70, 112, 115, 341, 560
Sau3AI GATC 5 cut(s) 182, 197, 345, 526, 541
SchI GAGTC 2 cut(s) 61, 90
SduI GDGCHC 1 cut(s) 502
SetI ASST 5 cut(s) 168, 303, 373, 431, 499
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 1 cut(s) 341
SmlI CTYRAG 2 cut(s) 545, 590
SmoI CTYRAG 2 cut(s) 545, 590
Sse9I AATT 4 cut(s) 471, 516, 534, 551
SsiI CCGC 5 cut(s) 40, 112, 356, 559, 562
TaiI ACGT 2 cut(s) 168, 499
TaqI TCGA 4 cut(s) 46, 59, 181, 210
TaqII GACCGA 1 cut(s) 284
TasI AATT 4 cut(s) 471, 516, 534, 551
TauI GCSGC 2 cut(s) 114, 562
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 2 cut(s) 136, 145
TseI GCWGC 3 cut(s) 69, 114, 340
TspDTI ATGAA 1 cut(s) 302
TspGWI ACGGA 3 cut(s) 24, 45, 210
TspRI CASTG 2 cut(s) 136, 145
XapI RAATTY 2 cut(s) 471, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.