MD10G1054500.v1.1

COPI associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0012490
Physical Location & Seq
Reverse (-)
7453396 .. 7456730
3335 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1054500.v1.1.491

Sequence Viewer

Length: 597 bp
ATGTCGACAAGCAATGGAGCCGACGTAGAAAGCGGCCTAGGACCGAGAACGTCTCCAGTTTCGAGTACAACCACACCGAGAGCGAGACCCGACCCTTTCTTGATCTGCTGCAGATGCTTCAGGGTCGTCACCGCTCTCACCGCAATTCTCTGCATCGTTGTCAACGTCTTCTCTGCCATTCAATCTTTCACTGATGGATCTGATGTTTTCGATGGGATATTTCGGTGTTACGCCGTCGTGATTGGAGTGATTGTGGTGGTGGTCGAGACGGAATGGGAATTCGTTATGAAGTTCTGGAAGCTATTGGAGTATTGGGCTGGTAGGGGTATGCTACAAATCTTCCTTGCGGTCATGACAAGAGCTTTTCCTGGCAATTCCAGTACAAAAAAGGATCTAGTTCTTCTAGAGGACATAGCGAGCTATATGCTCCTTGCTTGTGGTGGGATCTATATTATTTCGGGAATCCTATGCATTGGCTTTCTCAAACGGTCTCGGCAGAAGAAAGAAATTTCAAGGGAGCAAGCAGCAAAGGATCTTGAGGACTTGGAGCGGCGAAGGGAAGAACTTGAACACTTGCTTATTGAGCAAAGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPI_assoc

Protein Analysis

199

Amino Acids

22.2

Weight (kDa)

5.96

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33625 AT4G33625 AT4G33625
fragaria_vesca FvH4_2g11740
malus_domestica MD05G1047700.v1.1 MD10G1054500.v1.1
prunus_persica Prupe.8G070100_v2.0.a1
pyrus_communis pycom05g03960 pycom10g04140
rosa_chinensis RchiOBHm_Chr6g0270971
rosa_laevigata RLG00000013757
rosa_multiflora Rmu_sc0010958.1_g000007
rosa_roxburghii Rroxscaffold_7G00197470
rosa_rugosa Rorug06G0057500
rosa_samantha Rh6AG177100 Rh6BG180500 Rh6CG176500 Rh6DG168700
rosa_wichuraiana Rw6G015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 134, 550
AccI GTMKAC 1 cut(s) 5
AciI CCGC 5 cut(s) 33, 132, 141, 347, 550
AclWI GGATC 4 cut(s) 205, 399, 452, 540
AcsI RAATTY 2 cut(s) 278, 507
AcuI CTGAAG 1 cut(s) 103
AfaI GTAC 2 cut(s) 67, 382
AgsI TTSAA 3 cut(s) 182, 513, 569
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 3 cut(s) 301, 362, 420
AluI AGCT 3 cut(s) 301, 362, 420
Alw26I GTCTC 4 cut(s) 57, 79, 260, 495
AlwI GGATC 4 cut(s) 205, 399, 452, 540
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 2 cut(s) 108, 524
ApoI RAATTY 2 cut(s) 278, 507
AspA2I CCTAGG 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 2 cut(s) 121, 130
AvaII GGWCC 1 cut(s) 41
AvrII CCTAGG 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 160
BbvI GCAGC 2 cut(s) 95, 536
BccI CCATC 2 cut(s) 188, 206
BceAI ACGGC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 406, 440
BciT130I CCWGG 1 cut(s) 369
BcoDI GTCTC 4 cut(s) 57, 79, 260, 495
BfaI CTAG 3 cut(s) 38, 395, 404
BfmI CTRYAG 1 cut(s) 109
BisI GCNGC 4 cut(s) 34, 109, 525, 551
BlnI CCTAGG 1 cut(s) 37
BlsI GCNGC 4 cut(s) 35, 110, 526, 552
Bme1390I CCNGG 1 cut(s) 369
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 369
BmsI GCATC 2 cut(s) 104, 162
BpiI GAAGAC 1 cut(s) 160
BplI GAGNNNNNCTC 2 cut(s) 37, 69
BpmI CTGGAG 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 557
BsaI GGTCTC 2 cut(s) 79, 495
BsaJI CCNNGG 1 cut(s) 37
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 237, 267
Bse1I ACTGG 2 cut(s) 56, 378
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 19
BseNI ACTGG 2 cut(s) 56, 378
BseXI GCAGC 2 cut(s) 95, 536
BshFI GGCC 1 cut(s) 36
BsmAI GTCTC 4 cut(s) 57, 79, 260, 495
BsmBI CGTCTC 2 cut(s) 57, 260
BsnI GGCC 1 cut(s) 36
Bso31I GGTCTC 2 cut(s) 79, 495
Bsp143I GATC 5 cut(s) 102, 197, 391, 444, 532
BspACI CCGC 5 cut(s) 33, 132, 141, 347, 550
BspANI GGCC 1 cut(s) 36
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 113
BspPI GGATC 4 cut(s) 205, 399, 452, 540
BspTNI GGTCTC 2 cut(s) 79, 495
BsrBI CCGCTC 2 cut(s) 134, 550
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 2 cut(s) 56, 378
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 5 cut(s) 102, 197, 391, 444, 532
BssT1I CCWWGG 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 489
BstC8I GCNNGC 2 cut(s) 418, 522
BstKTI GATC 5 cut(s) 105, 200, 394, 447, 535
BstMAI GTCTC 4 cut(s) 57, 79, 260, 495
BstMBI GATC 5 cut(s) 102, 197, 391, 444, 532
BstMWI GCNNNNNNNGC 3 cut(s) 114, 140, 583
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 367
BstSFI CTRYAG 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 95, 536
BstV2I GAAGAC 1 cut(s) 160
BstX2I RGATCY 4 cut(s) 197, 391, 444, 532
BstYI RGATCY 4 cut(s) 197, 391, 444, 532
BsuRI GGCC 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 2 cut(s) 418, 522
CciI TCATGA 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 41
Csp6I GTAC 2 cut(s) 66, 381
CviAII CATG 1 cut(s) 352
CviJI RGCY 7 cut(s) 20, 36, 301, 317, 362, 420, 477
CviKI_1 RGCY 7 cut(s) 20, 36, 301, 317, 362, 420, 477
CviQI GTAC 2 cut(s) 66, 381
DpnI GATC 5 cut(s) 104, 199, 393, 446, 534
DpnII GATC 5 cut(s) 102, 197, 391, 444, 532
Eco130I CCWWGG 1 cut(s) 37
Eco31I GGTCTC 2 cut(s) 79, 495
Eco47I GGWCC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 473
ErhI CCWWGG 1 cut(s) 37
Esp3I CGTCTC 2 cut(s) 57, 260
FaeI CATG 1 cut(s) 355
FaiI YATR 8 cut(s) 287, 329, 353, 413, 423, 425, 450, 469
FatI CATG 1 cut(s) 351
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 34, 109, 525, 551
Fsp4HI GCNGC 4 cut(s) 34, 109, 525, 551
FspBI CTAG 3 cut(s) 38, 395, 404
GluI GCNGC 4 cut(s) 34, 109, 525, 551
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 36
Hin1II CATG 1 cut(s) 355
HincII GTYRAC 2 cut(s) 6, 163
HindII GTYRAC 2 cut(s) 6, 163
HinfI GANTC 1 cut(s) 462
HphI GGTGA 2 cut(s) 121, 130
Hpy166II GTNNAC 2 cut(s) 6, 163
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 8 cut(s) 100, 238, 265, 295, 352, 404, 459, 536
Hpy8I GTNNAC 2 cut(s) 6, 163
Hpy99I CGWCG 2 cut(s) 26, 239
HpyAV CCTTC 1 cut(s) 549
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4IV ACGT 3 cut(s) 24, 50, 165
HpyCH4V TGCA 3 cut(s) 111, 153, 471
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 140, 583
HpySE526I ACGT 3 cut(s) 24, 50, 165
Hsp92II CATG 1 cut(s) 355
Kzo9I GATC 5 cut(s) 102, 197, 391, 444, 532
LmnI GCTCC 4 cut(s) 17, 432, 517, 547
LpnPI CCDG 7 cut(s) 69, 106, 280, 303, 354, 381, 391
Lsp1109I GCAGC 2 cut(s) 95, 536
LweI GCATC 2 cut(s) 104, 162
MaeI CTAG 3 cut(s) 38, 395, 404
MaeII ACGT 3 cut(s) 24, 50, 165
MaeIII GTNAC 2 cut(s) 127, 227
MalI GATC 5 cut(s) 104, 199, 393, 446, 534
MbiI CCGCTC 2 cut(s) 134, 550
MboI GATC 5 cut(s) 102, 197, 391, 444, 532
MboII GAAGA 5 cut(s) 160, 331, 392, 511, 572
MflI RGATCY 4 cut(s) 197, 391, 444, 532
MluCI AATT 4 cut(s) 144, 278, 373, 507
MnlI CCTC 2 cut(s) 400, 532
Mph1103I ATGCAT 1 cut(s) 473
MseI TTAA 1 cut(s) 595
MspR9I CCNGG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 114, 140, 583
NdeII GATC 5 cut(s) 102, 197, 391, 444, 532
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 1 cut(s) 19
NmeAIII GCCGAG 1 cut(s) 472
NmuCI GTSAC 1 cut(s) 127
NsiI ATGCAT 1 cut(s) 473
PagI TCATGA 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PfeI GAWTC 1 cut(s) 462
PkrI GCNGC 4 cut(s) 35, 110, 526, 552
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 41
PstI CTGCAG 1 cut(s) 113
PsuI RGATCY 4 cut(s) 197, 391, 444, 532
RsaI GTAC 2 cut(s) 67, 382
RsaNI GTAC 2 cut(s) 66, 381
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 595
SatI GCNGC 4 cut(s) 34, 109, 525, 551
Sau3AI GATC 5 cut(s) 102, 197, 391, 444, 532
Sau96I GGNCC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 369
SetI ASST 6 cut(s) 27, 53, 168, 303, 364, 422
SfaNI GCATC 2 cut(s) 104, 162
SfcI CTRYAG 1 cut(s) 109
SinI GGWCC 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 4 cut(s) 144, 278, 373, 507
SsiI CCGC 5 cut(s) 33, 132, 141, 347, 550
SspMI CTAG 3 cut(s) 38, 395, 404
StyD4I CCNGG 1 cut(s) 367
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 489
TaiI ACGT 3 cut(s) 27, 53, 168
TaqI TCGA 4 cut(s) 5, 62, 210, 264
TaqII GACCGA 1 cut(s) 58
TasI AATT 4 cut(s) 144, 278, 373, 507
TatI WGTACW 2 cut(s) 65, 380
TauI GCSGC 2 cut(s) 36, 553
TfiI GAWTC 1 cut(s) 462
Tru1I TTAA 1 cut(s) 595
Tru9I TTAA 1 cut(s) 595
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 2 cut(s) 108, 524
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 302
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 41
XapI RAATTY 2 cut(s) 278, 507
XbaI TCTAGA 1 cut(s) 403
XmaJI CCTAGG 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 3 cut(s) 38, 395, 404
Zsp2I ATGCAT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.