FvH4_2g11740

COPI associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012490
Physical Location & Seq
Reverse (-)
10267740 .. 10269676
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11740.t1

Sequence Viewer

Length: 585 bp
ATGGAGGGAGGAGGAGGAGGAGGCGAGAGCAGTGAACGGAGTCCGTCAGGTAGCGGGACCAGGCTGAGAGTGAGACCCGACCCTTTCTTGGTGGTCTGTCGCGGCTTCAGCGTCGTCACTGCTCTCACCGCCATTCTCTGTATCGTCGTCAACGTCCTCTCCGCCATCCGATCCTTCGAGGACGGATCTGATATTTTCAATGGTATATTCCGGTGTTATGCTGTTCTCATTGCCATTTTTGTGGCTGTGGCCGAGACCGAGTGGGAATACGTTACCAAGTTCTGGAAGGTATTGGAGTACTGGGTTGGTAGGGGGATGCTGCAGATCTTTGTTGCGGTCATGACAAGAGCTTTTCCTGACTATACTGGTGCTAATGACGCGCTTATTCTTCTTCAGAACATAGCCAGCTATATGCTTCTTGCTTGTGGTGTGCTCTATGTTATTTCTGGAATTCTATGTATGGGCTTCCTCAAACGTTCTCGCCAGCAGAAAGAAATTTCAAGGGATCAAGCAATTAAGGATCTTGAGGAGTTAGAGCGGCGAAGGGAAGAACTTGAACACTTGCTTGTTGAGGAAAGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPI_assoc

Protein Analysis

195

Amino Acids

21.68

Weight (kDa)

5.36

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33625 AT4G33625 AT4G33625
fragaria_vesca FvH4_2g11740
malus_domestica MD05G1047700.v1.1 MD10G1054500.v1.1
prunus_persica Prupe.8G070100_v2.0.a1
pyrus_communis pycom05g03960 pycom10g04140
rosa_chinensis RchiOBHm_Chr6g0270971
rosa_laevigata RLG00000013757
rosa_multiflora Rmu_sc0010958.1_g000007
rosa_roxburghii Rroxscaffold_7G00197470
rosa_rugosa Rorug06G0057500
rosa_samantha Rh6AG177100 Rh6BG180500 Rh6CG176500 Rh6DG168700
rosa_wichuraiana Rw6G015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 282
AccBSI CCGCTC 1 cut(s) 538
AccII CGCG 2 cut(s) 102, 380
AciI CCGC 6 cut(s) 54, 102, 129, 162, 335, 538
AclI AACGTT 1 cut(s) 475
AclWI GGATC 4 cut(s) 165, 193, 513, 528
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 2 cut(s) 450, 495
AcuI CTGAAG 2 cut(s) 91, 377
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 2 cut(s) 88, 282
AgsI TTSAA 3 cut(s) 199, 501, 557
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 3 cut(s) 350, 408, 581
AluI AGCT 3 cut(s) 350, 408, 581
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 2 cut(s) 67, 248
AlwI GGATC 4 cut(s) 165, 193, 513, 528
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 319
ApoI RAATTY 2 cut(s) 450, 495
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 118
AvaII GGWCC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 1 cut(s) 306
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 67, 248
BfmI CTRYAG 1 cut(s) 320
BglII AGATCT 1 cut(s) 324
BisI GCNGC 3 cut(s) 103, 320, 539
BlsI GCNGC 3 cut(s) 104, 321, 540
BmcAI AGTACT 1 cut(s) 299
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 61
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 545
BsaI GGTCTC 2 cut(s) 67, 248
BsaWI WCCGGW 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 282
Bse1I ACTGG 2 cut(s) 305, 370
Bse3DI GCAATG 1 cut(s) 228
BseBI CCWGG 1 cut(s) 61
BseGI GGATG 2 cut(s) 165, 321
BseLI CCNNNNNNNGG 2 cut(s) 88, 282
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 2 cut(s) 305, 370
BseRI GAGGAG 5 cut(s) 24, 27, 30, 33, 542
BseXI GCAGC 1 cut(s) 306
Bsh1236I CGCG 2 cut(s) 102, 380
BshFI GGCC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 435
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 2 cut(s) 88, 282
BsmAI GTCTC 2 cut(s) 67, 248
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 1 cut(s) 251
Bso31I GGTCTC 2 cut(s) 67, 248
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 5 cut(s) 170, 185, 324, 505, 520
BspACI CCGC 6 cut(s) 54, 102, 129, 162, 335, 538
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 2 cut(s) 102, 380
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 58
BspMAI CTGCAG 1 cut(s) 324
BspPI GGATC 4 cut(s) 165, 193, 513, 528
BspTNI GGTCTC 2 cut(s) 67, 248
BsrBI CCGCTC 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 2 cut(s) 305, 370
BssMI GATC 5 cut(s) 170, 185, 324, 505, 520
Bst2UI CCWGG 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 406, 485
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 2 cut(s) 165, 321
BstFNI CGCG 2 cut(s) 102, 380
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 5 cut(s) 173, 188, 327, 508, 523
BstMAI GTCTC 2 cut(s) 67, 248
BstMBI GATC 5 cut(s) 170, 185, 324, 505, 520
BstMWI GCNNNNNNNGC 3 cut(s) 108, 128, 377
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 320
BstUI CGCG 2 cut(s) 102, 380
BstV1I GCAGC 1 cut(s) 306
BstX2I RGATCY 3 cut(s) 185, 324, 520
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 3 cut(s) 185, 324, 520
BsuRI GGCC 1 cut(s) 251
BtsCI GGATG 2 cut(s) 165, 321
BtsI GCAGTG 2 cut(s) 37, 117
BtsIMutI CAGTG 2 cut(s) 37, 117
Cac8I GCNNGC 2 cut(s) 406, 485
CciI TCATGA 1 cut(s) 339
CfoI GCGC 1 cut(s) 382
Cfr13I GGNCC 1 cut(s) 57
CseI GACGC 2 cut(s) 100, 386
Csp6I GTAC 1 cut(s) 298
CviAII CATG 1 cut(s) 340
CviJI RGCY 9 cut(s) 64, 105, 245, 251, 350, 404, 408, 465, 581
CviKI_1 RGCY 9 cut(s) 64, 105, 245, 251, 350, 404, 408, 465, 581
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 65
DpnI GATC 5 cut(s) 172, 187, 326, 507, 522
DpnII GATC 5 cut(s) 170, 185, 324, 505, 520
EaeI YGGCCR 1 cut(s) 249
EciI GGCGGA 1 cut(s) 151
Eco31I GGTCTC 2 cut(s) 67, 248
Eco47I GGWCC 1 cut(s) 57
Eco57I CTGAAG 2 cut(s) 91, 377
EcoRI GAATTC 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 59
FaeI CATG 1 cut(s) 343
FaqI GGGAC 1 cut(s) 70
FatI CATG 1 cut(s) 339
FauI CCCGC 1 cut(s) 47
Fnu4HI GCNGC 3 cut(s) 103, 320, 539
FokI GGATG 2 cut(s) 152, 328
Fsp4HI GCNGC 3 cut(s) 103, 320, 539
GlaI GCGC 1 cut(s) 381
GluI GCNGC 3 cut(s) 103, 320, 539
HaeIII GGCC 1 cut(s) 251
HapII CCGG 1 cut(s) 211
HgaI GACGC 2 cut(s) 100, 386
HhaI GCGC 1 cut(s) 382
Hin1II CATG 1 cut(s) 343
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 1 cut(s) 40
HpaII CCGG 1 cut(s) 211
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 2 cut(s) 35, 151
Hpy188I TCNGA 3 cut(s) 170, 190, 396
Hpy188III TCNNGA 5 cut(s) 283, 340, 356, 447, 524
Hpy8I GTNNAC 2 cut(s) 35, 151
Hpy99I CGWCG 2 cut(s) 116, 149
HpyAV CCTTC 3 cut(s) 184, 280, 537
HpyCH4IV ACGT 3 cut(s) 153, 270, 475
HpyCH4V TGCA 1 cut(s) 322
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 128, 377
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 3 cut(s) 153, 270, 475
Hsp92II CATG 1 cut(s) 343
HspAI GCGC 1 cut(s) 380
Kzo9I GATC 5 cut(s) 170, 185, 324, 505, 520
Lsp1109I GCAGC 1 cut(s) 306
LweI GCATC 1 cut(s) 306
MaeII ACGT 3 cut(s) 153, 270, 475
MaeIII GTNAC 2 cut(s) 115, 271
MalI GATC 5 cut(s) 172, 187, 326, 507, 522
MbiI CCGCTC 1 cut(s) 538
MboI GATC 5 cut(s) 170, 185, 324, 505, 520
MboII GAAGA 3 cut(s) 380, 383, 560
MflI RGATCY 3 cut(s) 185, 324, 520
MhlI GDGCHC 1 cut(s) 435
MluCI AATT 3 cut(s) 450, 495, 513
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 9 cut(s) 5, 8, 11, 14, 167, 172, 479, 520, 565
MseI TTAA 2 cut(s) 516, 583
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 61
MvnI CGCG 2 cut(s) 102, 380
MwoI GCNNNNNNNGC 3 cut(s) 108, 128, 377
NdeII GATC 5 cut(s) 170, 185, 324, 505, 520
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 1 cut(s) 58
NmeAIII GCCGAG 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 115
PagI TCATGA 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 282
PkrI GCNGC 3 cut(s) 104, 321, 540
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
Psp1406I AACGTT 1 cut(s) 475
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 57
PstI CTGCAG 1 cut(s) 324
PsuI RGATCY 3 cut(s) 185, 324, 520
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 2 cut(s) 516, 583
SatI GCNGC 3 cut(s) 103, 320, 539
Sau3AI GATC 5 cut(s) 170, 185, 324, 505, 520
Sau96I GGNCC 1 cut(s) 57
ScaI AGTACT 1 cut(s) 299
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 1 cut(s) 435
SetI ASST 8 cut(s) 52, 156, 273, 291, 352, 410, 478, 583
SfaNI GCATC 1 cut(s) 306
SfcI CTRYAG 1 cut(s) 320
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 3 cut(s) 450, 495, 513
SsiI CCGC 6 cut(s) 54, 102, 129, 162, 335, 538
StyD4I CCNGG 1 cut(s) 59
TaiI ACGT 3 cut(s) 156, 273, 478
TaqI TCGA 1 cut(s) 177
TaqII GACCGA 1 cut(s) 272
TasI AATT 3 cut(s) 450, 495, 513
TatI WGTACW 1 cut(s) 297
TauI GCSGC 2 cut(s) 105, 541
Tru1I TTAA 2 cut(s) 516, 583
Tru9I TTAA 2 cut(s) 516, 583
TscAI CASTG 2 cut(s) 37, 124
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 115
TspGWI ACGGA 3 cut(s) 33, 52, 198
TspRI CASTG 2 cut(s) 37, 124
Van91I CCANNNNNTGG 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 57
XapI RAATTY 2 cut(s) 450, 495
ZrmI AGTACT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.