Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012490

Physical Location & Seq

Genomic Coordinates Reverse (-)

4529145 .. 4531642

Gene Structure 2498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTCCACAAACGATGGAGTCGACGGAGAAAGCAGCCTACGACGGAGAACATCTCCAGTTCCGAGTACAACCAGACTGAGAGTGAGACCCGACCCTTTCTTGATCTGCTGCAGATGCTTCAGCGTCCTCACAGCTCTCACCGCCATTCTCTGCATCGTCGTCAACGTCTTCTCAGCCATTCAATCTTTCACAGATGGATCTGATGTTTTCGATGGGATATTTCGGTGTTACGCCGTCGTGGTTGGCATGATTGTGGTGGTGGCCGAGACGGAATGGGGATTCGTTATGAAGTTCTGGAAGATATTGGACTATTGGGCTGGTAGGGGTATGCTGCAAATCTTCGTCGCGGTCATGACAAGAGCTTTTCCTAACGAATCTAGTACAAAAAAGGGGCTAGTTATTCTACAGAACATAGCAAGCTATATGCTCCTTGCTTGTGGTGGGATCTATTTTATTTCGGGAATCCTATGCATTGGCTTTCTCAAACGGGCTCGGCAGAAGACAGAAATTTCAAGGGAGCAAGCAGTAAAGGATCTTGAGGACTTGGAGCGGCGAAGGGAAGAACTTGAACAATTACTTATTGAGGAAAGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_assoc

Protein Analysis

199

Amino Acids

22.37

Weight (kDa)

7.51

Isoelectric Point (pI)

61.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33625 AT4G33625 AT4G33625
fragaria_vesca	FvH4_2g11740
malus_domestica	MD05G1047700.v1.1 MD10G1054500.v1.1
prunus_persica	Prupe.8G070100_v2.0.a1
pyrus_communis	pycom05g03960 pycom10g04140
rosa_chinensis	RchiOBHm_Chr6g0270971
rosa_laevigata	RLG00000013757
rosa_multiflora	Rmu_sc0010958.1_g000007
rosa_roxburghii	Rroxscaffold_7G00197470
rosa_rugosa	Rorug06G0057500
rosa_samantha	Rh6AG177100 Rh6BG180500 Rh6CG176500 Rh6DG168700
rosa_wichuraiana	Rw6G015100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	550
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	1 cut(s)	347
AciI	CCGC	3 cut(s)	141, 347, 550
AclWI	GGATC	3 cut(s)	205, 452, 540
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	507
AcuI	CTGAAG	1 cut(s)	103
AfaI	GTAC	2 cut(s)	67, 382
AgsI	TTSAA	3 cut(s)	182, 513, 569
AluBI	AGCT	3 cut(s)	134, 362, 420
AluI	AGCT	3 cut(s)	134, 362, 420
Alw26I	GTCTC	2 cut(s)	79, 260
AlwI	GGATC	3 cut(s)	205, 452, 540
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	3 cut(s)	33, 108, 331
ApoI	RAATTY	1 cut(s)	507
AsuHPI	GGTGA	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	493
BbsI	GAAGAC	2 cut(s)	160, 506
BbvI	GCAGC	3 cut(s)	45, 95, 318
BccI	CCATC	3 cut(s)	8, 188, 206
BceAI	ACGGC	1 cut(s)	218
BcoDI	GTCTC	2 cut(s)	79, 260
BfaI	CTAG	2 cut(s)	378, 395
BfmI	CTRYAG	2 cut(s)	109, 404
BisI	GCNGC	4 cut(s)	34, 109, 332, 551
BlsI	GCNGC	4 cut(s)	35, 110, 333, 552
BmsI	GCATC	2 cut(s)	104, 162
BpiI	GAAGAC	2 cut(s)	160, 506
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BpmI	CTGGAG	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	557
BsaI	GGTCTC	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	56
BseMII	CTCAG	2 cut(s)	68, 186
BseNI	ACTGG	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	45, 95, 318
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	79, 260
BsmBI	CGTCTC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp143I	GATC	4 cut(s)	102, 197, 444, 532
BspACI	CCGC	3 cut(s)	141, 347, 550
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	2 cut(s)	69, 185
BspFNI	CGCG	1 cut(s)	347
BspHI	TCATGA	1 cut(s)	351
BspMAI	CTGCAG	1 cut(s)	113
BspPI	GGATC	3 cut(s)	205, 452, 540
BspTNI	GGTCTC	1 cut(s)	79
BsrBI	CCGCTC	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	56
BssMI	GATC	4 cut(s)	102, 197, 444, 532
BstC8I	GCNNGC	2 cut(s)	418, 522
BstDEI	CTNAG	2 cut(s)	77, 172
BstFNI	CGCG	1 cut(s)	347
BstKTI	GATC	4 cut(s)	105, 200, 447, 535
BstMAI	GTCTC	2 cut(s)	79, 260
BstMBI	GATC	4 cut(s)	102, 197, 444, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 140
BstSFI	CTRYAG	2 cut(s)	109, 404
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	3 cut(s)	45, 95, 318
BstV2I	GAAGAC	2 cut(s)	160, 506
BstX2I	RGATCY	3 cut(s)	197, 444, 532
BstYI	RGATCY	3 cut(s)	197, 444, 532
BsuRI	GGCC	1 cut(s)	263
Cac8I	GCNNGC	2 cut(s)	418, 522
CciI	TCATGA	1 cut(s)	351
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	66, 381
CviAII	CATG	2 cut(s)	247, 352
CviQI	GTAC	2 cut(s)	66, 381
DdeI	CTNAG	2 cut(s)	77, 172
DpnI	GATC	4 cut(s)	104, 199, 446, 534
DpnII	GATC	4 cut(s)	102, 197, 444, 532
EaeI	YGGCCR	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	493
Eco31I	GGTCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	473
EcoT38I	GRGCYC	1 cut(s)	493
Esp3I	CGTCTC	1 cut(s)	260
FaeI	CATG	2 cut(s)	250, 355
FaiI	YATR	8 cut(s)	248, 287, 329, 353, 413, 423, 425, 469
FatI	CATG	2 cut(s)	246, 351
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	4 cut(s)	34, 109, 332, 551
FriOI	GRGCYC	1 cut(s)	493
Fsp4HI	GCNGC	4 cut(s)	34, 109, 332, 551
FspBI	CTAG	2 cut(s)	378, 395
GluI	GCNGC	4 cut(s)	34, 109, 332, 551
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	263
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	250, 355
HincII	GTYRAC	2 cut(s)	22, 163
HindII	GTYRAC	2 cut(s)	22, 163
HinfI	GANTC	4 cut(s)	18, 279, 374, 462
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	3 cut(s)	6, 22, 163
Hpy188I	TCNGA	2 cut(s)	63, 202
Hpy188III	TCNNGA	5 cut(s)	100, 295, 352, 459, 536
Hpy8I	GTNNAC	3 cut(s)	6, 22, 163
Hpy99I	CGWCG	5 cut(s)	26, 45, 161, 239, 347
HpyAV	CCTTC	1 cut(s)	549
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	4 cut(s)	111, 153, 334, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 140
HpyF3I	CTNAG	2 cut(s)	77, 172
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	250, 355
Kzo9I	GATC	4 cut(s)	102, 197, 444, 532
LmnI	GCTCC	3 cut(s)	432, 517, 547
LpnPI	CCDG	4 cut(s)	69, 85, 280, 303
Lsp1109I	GCAGC	3 cut(s)	45, 95, 318
LweI	GCATC	2 cut(s)	104, 162
MaeI	CTAG	2 cut(s)	378, 395
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	4 cut(s)	104, 199, 446, 534
MbiI	CCGCTC	1 cut(s)	550
MboI	GATC	4 cut(s)	102, 197, 444, 532
MboII	GAAGA	5 cut(s)	160, 310, 331, 511, 572
MflI	RGATCY	3 cut(s)	197, 444, 532
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	2 cut(s)	507, 572
MlyI	GAGTC	1 cut(s)	27
MnlI	CCTC	3 cut(s)	137, 532, 577
Mph1103I	ATGCAT	1 cut(s)	473
MslI	CAYNNNNRTG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	114, 140
NdeII	GATC	4 cut(s)	102, 197, 444, 532
NlaIII	CATG	2 cut(s)	250, 355
NmeAIII	GCCGAG	2 cut(s)	289, 472
NsiI	ATGCAT	1 cut(s)	473
PagI	TCATGA	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 162
PfeI	GAWTC	3 cut(s)	279, 374, 462
PkrI	GCNGC	4 cut(s)	35, 110, 333, 552
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	113
PsuI	RGATCY	3 cut(s)	197, 444, 532
RsaI	GTAC	2 cut(s)	67, 382
RsaNI	GTAC	2 cut(s)	66, 381
RseI	CAYNNNNRTG	1 cut(s)	251
SalI	GTCGAC	1 cut(s)	20
SatI	GCNGC	4 cut(s)	34, 109, 332, 551
Sau3AI	GATC	4 cut(s)	102, 197, 444, 532
SchI	GAGTC	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	493
SetI	ASST	4 cut(s)	136, 168, 364, 422
SfaNI	GCATC	2 cut(s)	104, 162
SfcI	CTRYAG	2 cut(s)	109, 404
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	2 cut(s)	507, 572
SsiI	CCGC	3 cut(s)	141, 347, 550
SspMI	CTAG	2 cut(s)	378, 395
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	2 cut(s)	21, 210
TasI	AATT	2 cut(s)	507, 572
TatI	WGTACW	2 cut(s)	65, 380
TauI	GCSGC	1 cut(s)	553
TfiI	GAWTC	3 cut(s)	279, 374, 462
TseI	GCWGC	3 cut(s)	33, 108, 331
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	3 cut(s)	39, 58, 284
XapI	RAATTY	1 cut(s)	507
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	2 cut(s)	378, 395
Zsp2I	ATGCAT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.