Rh6AG177100

COPI associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012490
Physical Location & Seq
Forward (+)
28709860 .. 28712526
2667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG177100.1

Sequence Viewer

Length: 477 bp
ATGGAGGACGGAGGAGGAGAGGGCGAGCGGAATCGAACGAGTCCGTCGAGTAGTAGCAGCAGACTGAGAGTCAGAGCCGACCCTTTCTTGGTGGTGTGCCGCTGCTTCAGCGTCATCACTGCTCTCACTGCCATTCTCTGTATCGTCGTCAACGTCCTCTCCGCCATTCGATCCTTCACGGACGGATCTGATATTTTCGATGGTATATTTCGGTGTTATGCTGTTATCATTGCCTTTTTTGTGGTTGTGGCCGAGACCGAGTGGGCATTCGTTTTGAAGTTCTGGAAGGTATTGGAGTATTGGGTTGGTAGGGGTATGCTGCAGATCTTTGTTGCGGTCATGACAAGAGCTTTTCCTGACTATACTGGTGCTAATGATGCGCTTGTTCTTCTCCAGAACATAGCAAGCTATATGCTTCTTGCTTGTGGCGTGCTCTATGTTATTTCGGTAAGTCTAAGTACAAGAATCAGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPI_assoc

Protein Analysis

158

Amino Acids

17.53

Weight (kDa)

7.59

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33625 AT4G33625 AT4G33625
fragaria_vesca FvH4_2g11740
malus_domestica MD05G1047700.v1.1 MD10G1054500.v1.1
prunus_persica Prupe.8G070100_v2.0.a1
pyrus_communis pycom05g03960 pycom10g04140
rosa_chinensis RchiOBHm_Chr6g0270971
rosa_laevigata RLG00000013757
rosa_multiflora Rmu_sc0010958.1_g000007
rosa_roxburghii Rroxscaffold_7G00197470
rosa_rugosa Rorug06G0057500
rosa_samantha Rh6AG177100 Rh6BG180500 Rh6CG176500 Rh6DG168700
rosa_wichuraiana Rw6G015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 28
AciI CCGC 4 cut(s) 28, 100, 162, 335
AclWI GGATC 2 cut(s) 165, 193
AcoI YGGCCR 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 91
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 1 cut(s) 277
AhdI GACNNNNNGTC 1 cut(s) 68
AluBI AGCT 2 cut(s) 350, 408
AluI AGCT 2 cut(s) 350, 408
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 2 cut(s) 165, 193
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 3 cut(s) 57, 102, 319
AspLEI GCGC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 3 cut(s) 69, 89, 306
BccI CCATC 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 320
BglII AGATCT 1 cut(s) 324
BisI GCNGC 4 cut(s) 58, 100, 103, 320
BlsI GCNGC 4 cut(s) 59, 101, 104, 321
BmeRI GACNNNNNGTC 1 cut(s) 68
BmsI GCATC 1 cut(s) 367
BpmI CTGGAG 1 cut(s) 377
BsaI GGTCTC 1 cut(s) 248
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 2 cut(s) 27, 30
BseXI GCAGC 3 cut(s) 69, 89, 306
BshFI GGCC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 435
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 1 cut(s) 251
Bso31I GGTCTC 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 3 cut(s) 170, 185, 324
BspACI CCGC 4 cut(s) 28, 100, 162, 335
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 57
BspHI TCATGA 1 cut(s) 339
BspMAI CTGCAG 1 cut(s) 324
BspPI GGATC 2 cut(s) 165, 193
BspTNI GGTCTC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 1 cut(s) 370
BssMI GATC 3 cut(s) 170, 185, 324
BstC8I GCNNGC 3 cut(s) 26, 406, 431
BstDEI CTNAG 2 cut(s) 65, 455
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 3 cut(s) 173, 188, 327
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 3 cut(s) 170, 185, 324
BstMWI GCNNNNNNNGC 3 cut(s) 108, 128, 377
BstSFI CTRYAG 1 cut(s) 320
BstV1I GCAGC 3 cut(s) 69, 89, 306
BstX2I RGATCY 2 cut(s) 185, 324
BstYI RGATCY 2 cut(s) 185, 324
BsuRI GGCC 1 cut(s) 251
BtsI GCAGTG 2 cut(s) 117, 126
BtsIMutI CAGTG 2 cut(s) 117, 126
Cac8I GCNNGC 3 cut(s) 26, 406, 431
CciI TCATGA 1 cut(s) 339
CfoI GCGC 1 cut(s) 382
CseI GACGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 459
CviAII CATG 1 cut(s) 340
CviJI RGCY 4 cut(s) 77, 251, 350, 408
CviKI_1 RGCY 4 cut(s) 77, 251, 350, 408
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 2 cut(s) 65, 455
DpnI GATC 3 cut(s) 172, 187, 326
DpnII GATC 3 cut(s) 170, 185, 324
DriI GACNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 249
Eam1105I GACNNNNNGTC 1 cut(s) 68
EciI GGCGGA 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 91
FaeI CATG 1 cut(s) 343
FaiI YATR 9 cut(s) 206, 219, 317, 341, 363, 401, 411, 413, 438
FatI CATG 1 cut(s) 339
Fnu4HI GCNGC 4 cut(s) 58, 100, 103, 320
Fsp4HI GCNGC 4 cut(s) 58, 100, 103, 320
GlaI GCGC 1 cut(s) 381
GluI GCNGC 4 cut(s) 58, 100, 103, 320
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 1 cut(s) 251
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 382
Hin1II CATG 1 cut(s) 343
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 4 cut(s) 31, 40, 69, 465
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 74, 190
Hpy188III TCNNGA 4 cut(s) 283, 340, 356, 394
Hpy8I GTNNAC 1 cut(s) 151
Hpy99I CGWCG 2 cut(s) 49, 149
HpyAV CCTTC 2 cut(s) 184, 280
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 322
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 128, 377
HpyF3I CTNAG 2 cut(s) 65, 455
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 343
HspAI GCGC 1 cut(s) 380
Kzo9I GATC 3 cut(s) 170, 185, 324
LpnPI CCDG 5 cut(s) 268, 351, 369, 407, 454
Lsp1109I GCAGC 3 cut(s) 69, 89, 306
LweI GCATC 1 cut(s) 367
MaeII ACGT 1 cut(s) 153
MalI GATC 3 cut(s) 172, 187, 326
MbiI CCGCTC 1 cut(s) 28
MboI GATC 3 cut(s) 170, 185, 324
MboII GAAGA 1 cut(s) 380
MflI RGATCY 2 cut(s) 185, 324
MhlI GDGCHC 1 cut(s) 435
MlyI GAGTC 2 cut(s) 49, 78
MnlI CCTC 4 cut(s) 5, 8, 13, 167
MspA1I CMGCKG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 266
MwoI GCNNNNNNNGC 3 cut(s) 108, 128, 377
NdeII GATC 3 cut(s) 170, 185, 324
NlaIII CATG 1 cut(s) 343
NmeAIII GCCGAG 1 cut(s) 277
PagI TCATGA 1 cut(s) 339
PcsI WCGNNNNNNNCGW 2 cut(s) 44, 150
PctI GAATGC 1 cut(s) 266
PfeI GAWTC 2 cut(s) 31, 465
PkrI GCNGC 4 cut(s) 59, 101, 104, 321
PleI GAGTC 2 cut(s) 48, 77
PpsI GAGTC 2 cut(s) 48, 77
PstI CTGCAG 1 cut(s) 324
PsuI RGATCY 2 cut(s) 185, 324
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
SatI GCNGC 4 cut(s) 58, 100, 103, 320
Sau3AI GATC 3 cut(s) 170, 185, 324
SchI GAGTC 2 cut(s) 49, 78
SduI GDGCHC 1 cut(s) 435
SetI ASST 4 cut(s) 156, 291, 352, 410
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 1 cut(s) 320
SsiI CCGC 4 cut(s) 28, 100, 162, 335
TaiI ACGT 1 cut(s) 156
TaqI TCGA 4 cut(s) 34, 47, 169, 198
TaqII GACCGA 1 cut(s) 272
TatI WGTACW 1 cut(s) 458
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 2 cut(s) 31, 465
TscAI CASTG 2 cut(s) 124, 133
TseI GCWGC 3 cut(s) 57, 102, 319
TspGWI ACGGA 4 cut(s) 24, 33, 194, 198
TspRI CASTG 2 cut(s) 124, 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.