RLG00000013757

COPI associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012490
Physical Location & Seq
Reverse (-)
40426565 .. 40428761
2197 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013757

Sequence Viewer

Length: 588 bp
ATGGAGGACGGAGGAGGAGGAGAGAGCGCGCGGAGTCGAACAAGTCCGTCGAGTAGTAGCAGCAGACTGAGAGTCAGAGCCGACCCTTTCTTGGTCGTGTGCCGCTGCTTTAGCGTCATCACTGCTCTCACTGCCATTCTCTGTATCGTCGTCAACGTCCTCTCCGCCATTCGATCCTTCAAGGACGGATCTGATATTTTCGATGGTATATTTCGGTGTTATGCTGTTATCATTGCCATTTTTGTGGTTGTGGCCGAGACCGAGTGGGCATTCGTTATGAAGTTCTGGAAGGTATTGGAGTATTGGGTTGGTAGGGGTATGCTCCAGATCTTTGTTGCGGTCATGACAAGAGCTTTTCCTGACTATACTGGTGCTAGTGATGCGCTTGTTCTTCTCCAGAACATAGCAAGCTATATGCTTCTTTCTTGTGGCGTGCTCTATGTTATTTCGGGAATTTTATGTATTGGCTTCCTCAAACGTGCTCGCCAGCAGAAAGAAATTTCAAGGGATCAAGCAATTAAGGATCTTGAGGAATTGGAGCGGCGGAGGGAAGAACTTGAATACTTGCTTATTGAGGAAAGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPI_assoc

Protein Analysis

196

Amino Acids

21.93

Weight (kDa)

6.37

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33625 AT4G33625 AT4G33625
fragaria_vesca FvH4_2g11740
malus_domestica MD05G1047700.v1.1 MD10G1054500.v1.1
prunus_persica Prupe.8G070100_v2.0.a1
pyrus_communis pycom05g03960 pycom10g04140
rosa_chinensis RchiOBHm_Chr6g0270971
rosa_laevigata RLG00000013757
rosa_multiflora Rmu_sc0010958.1_g000007
rosa_roxburghii Rroxscaffold_7G00197470
rosa_rugosa Rorug06G0057500
rosa_samantha Rh6AG177100 Rh6BG180500 Rh6CG176500 Rh6DG168700
rosa_wichuraiana Rw6G015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 541
AccII CGCG 2 cut(s) 29, 31
AciI CCGC 6 cut(s) 31, 103, 165, 338, 541, 544
AclWI GGATC 4 cut(s) 168, 196, 516, 531
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 2 cut(s) 453, 498
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 3 cut(s) 181, 504, 560
AhdI GACNNNNNGTC 1 cut(s) 71
AluBI AGCT 2 cut(s) 353, 411
AluI AGCT 2 cut(s) 353, 411
Alw21I GWGCWC 2 cut(s) 438, 484
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 4 cut(s) 168, 196, 516, 531
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 60, 105
ApoI RAATTY 2 cut(s) 453, 498
AspLEI GCGC 3 cut(s) 29, 31, 385
Bbv12I GWGCWC 2 cut(s) 438, 484
BbvI GCAGC 2 cut(s) 72, 92
BccI CCATC 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 375
BglII AGATCT 1 cut(s) 327
BisI GCNGC 4 cut(s) 61, 103, 106, 542
BlsI GCNGC 4 cut(s) 62, 104, 107, 543
BmeRI GACNNNNNGTC 1 cut(s) 71
BmsI GCATC 1 cut(s) 370
BpmI CTGGAG 2 cut(s) 308, 380
BpuEI CTTGAG 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 373
BsePI GCGCGC 1 cut(s) 27
BseRI GAGGAG 3 cut(s) 27, 30, 33
BseXI GCAGC 2 cut(s) 72, 92
Bsh1236I CGCG 2 cut(s) 29, 31
BshFI GGCC 1 cut(s) 254
BsiHKAI GWGCWC 2 cut(s) 438, 484
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 1 cut(s) 254
Bso31I GGTCTC 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 438, 484
Bsp143I GATC 5 cut(s) 173, 188, 327, 508, 523
BspACI CCGC 6 cut(s) 31, 103, 165, 338, 541, 544
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 1 cut(s) 60
BspFNI CGCG 2 cut(s) 29, 31
BspHI TCATGA 1 cut(s) 342
BspPI GGATC 4 cut(s) 168, 196, 516, 531
BspTNI GGTCTC 1 cut(s) 251
BsrBI CCGCTC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 373
BssHII GCGCGC 1 cut(s) 27
BssMI GATC 5 cut(s) 173, 188, 327, 508, 523
BstC8I GCNNGC 5 cut(s) 29, 409, 434, 484, 488
BstDEI CTNAG 1 cut(s) 68
BstFNI CGCG 2 cut(s) 29, 31
BstHHI GCGC 3 cut(s) 29, 31, 385
BstKTI GATC 5 cut(s) 176, 191, 330, 511, 526
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 5 cut(s) 173, 188, 327, 508, 523
BstMWI GCNNNNNNNGC 3 cut(s) 111, 131, 380
BstUI CGCG 2 cut(s) 29, 31
BstV1I GCAGC 2 cut(s) 72, 92
BstX2I RGATCY 3 cut(s) 188, 327, 523
BstXI CCANNNNNNTGG 1 cut(s) 244
BstYI RGATCY 3 cut(s) 188, 327, 523
BsuRI GGCC 1 cut(s) 254
BtsI GCAGTG 2 cut(s) 120, 129
BtsIMutI CAGTG 2 cut(s) 120, 129
Cac8I GCNNGC 5 cut(s) 29, 409, 434, 484, 488
CciI TCATGA 1 cut(s) 342
CfoI GCGC 3 cut(s) 29, 31, 385
CseI GACGC 1 cut(s) 103
CviAII CATG 1 cut(s) 343
CviJI RGCY 6 cut(s) 80, 254, 353, 411, 468, 584
CviKI_1 RGCY 6 cut(s) 80, 254, 353, 411, 468, 584
DdeI CTNAG 1 cut(s) 68
DpnI GATC 5 cut(s) 175, 190, 329, 510, 525
DpnII GATC 5 cut(s) 173, 188, 327, 508, 523
DriI GACNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 252
Eam1105I GACNNNNNGTC 1 cut(s) 71
EciI GGCGGA 2 cut(s) 154, 559
Eco31I GGTCTC 1 cut(s) 251
FaeI CATG 1 cut(s) 346
FatI CATG 1 cut(s) 342
Fnu4HI GCNGC 4 cut(s) 61, 103, 106, 542
Fsp4HI GCNGC 4 cut(s) 61, 103, 106, 542
FspBI CTAG 1 cut(s) 375
GlaI GCGC 3 cut(s) 28, 30, 384
GluI GCNGC 4 cut(s) 61, 103, 106, 542
GsuI CTGGAG 2 cut(s) 308, 380
HaeIII GGCC 1 cut(s) 254
HgaI GACGC 1 cut(s) 103
HhaI GCGC 3 cut(s) 29, 31, 385
Hin1II CATG 1 cut(s) 346
Hin6I GCGC 3 cut(s) 27, 29, 383
HinP1I GCGC 3 cut(s) 27, 29, 383
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 34, 72
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 77, 193
Hpy188III TCNNGA 7 cut(s) 286, 325, 343, 359, 397, 450, 527
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 2 cut(s) 52, 152
HpyAV CCTTC 2 cut(s) 187, 283
HpyCH4IV ACGT 2 cut(s) 156, 478
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 131, 380
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 2 cut(s) 156, 478
Hsp92II CATG 1 cut(s) 346
HspAI GCGC 3 cut(s) 27, 29, 383
Kzo9I GATC 5 cut(s) 173, 188, 327, 508, 523
LmnI GCTCC 2 cut(s) 327, 538
LpnPI CCDG 6 cut(s) 271, 338, 354, 372, 410, 500
Lsp1109I GCAGC 2 cut(s) 72, 92
LweI GCATC 1 cut(s) 370
MaeI CTAG 1 cut(s) 375
MaeII ACGT 2 cut(s) 156, 478
MalI GATC 5 cut(s) 175, 190, 329, 510, 525
MbiI CCGCTC 1 cut(s) 541
MboI GATC 5 cut(s) 173, 188, 327, 508, 523
MboII GAAGA 2 cut(s) 383, 563
MflI RGATCY 3 cut(s) 188, 327, 523
MhlI GDGCHC 2 cut(s) 438, 484
MluCI AATT 4 cut(s) 453, 498, 516, 533
MlyI GAGTC 2 cut(s) 43, 81
MnlI CCTC 8 cut(s) 5, 8, 11, 170, 482, 523, 540, 568
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 269
MvnI CGCG 2 cut(s) 29, 31
MwoI GCNNNNNNNGC 3 cut(s) 111, 131, 380
NdeII GATC 5 cut(s) 173, 188, 327, 508, 523
NlaIII CATG 1 cut(s) 346
NmeAIII GCCGAG 1 cut(s) 280
PagI TCATGA 1 cut(s) 342
PauI GCGCGC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 269
PkrI GCNGC 4 cut(s) 62, 104, 107, 543
PleI GAGTC 2 cut(s) 42, 80
PpsI GAGTC 2 cut(s) 42, 80
PsuI RGATCY 3 cut(s) 188, 327, 523
PteI GCGCGC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 4 cut(s) 61, 103, 106, 542
Sau3AI GATC 5 cut(s) 173, 188, 327, 508, 523
SchI GAGTC 2 cut(s) 43, 81
SduI GDGCHC 2 cut(s) 438, 484
SetI ASST 5 cut(s) 159, 294, 355, 413, 481
SfaNI GCATC 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 4 cut(s) 453, 498, 516, 533
SsiI CCGC 6 cut(s) 31, 103, 165, 338, 541, 544
SspMI CTAG 1 cut(s) 375
TaiI ACGT 2 cut(s) 159, 481
TaqI TCGA 4 cut(s) 37, 50, 172, 201
TaqII GACCGA 1 cut(s) 275
TasI AATT 4 cut(s) 453, 498, 516, 533
TauI GCSGC 2 cut(s) 105, 544
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 2 cut(s) 127, 136
TseI GCWGC 2 cut(s) 60, 105
TspDTI ATGAA 1 cut(s) 293
TspGWI ACGGA 3 cut(s) 24, 36, 201
TspRI CASTG 2 cut(s) 127, 136
XapI RAATTY 2 cut(s) 453, 498
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.