Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011375

Physical Location & Seq

Genomic Coordinates Reverse (-)

16169523 .. 16171631

Gene Structure 2109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G33670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGACGAAAATAGAGCTTCGAGCTTTGGGGAACACAGGGCTTAAGGTTAGCGCCGTTGGTTTTGGTGCCTCTCCGCTCGGAAGTGTCTTCGGTCCAGTCGCCGAAGATGATGCCGTCGCCACCGTGCGCGAGGCTTTCCGTCTCGGTATCAACTTCTTCGACACCTCCCCGTATTATGGAGGAACACTGTCTGAGAAAATGCTTGGTAAGGGACTAAAGGCTTTGCAAGTCCCTAGAAGTGACTACATTGTGGCTACTAAGTGTGGTAGATATAAAGAAGGTTTTGATTTCAGTGCTGAGAGAGTAAGAAAGAGTATTGACGAGAGCTTGGAGAGGCTTCAGCTTGATTATGTTGACATACTTCATTGCCATGACATTGAGTTCGGGTCTCTTGATCAGATTGTGAGTGAAACAATTCCTGCTCTTCAGAAACTGAAACAAGAGGGGAAGACCCGGTTCATTGGTATCACTGGTCTTCCGTTAGATATTTTCACTTATGTTCTTGATCGAGTGCCTCCAGGGACTGTCGATGTGATATTGTCATACTGTCATTACGGCGTTAATGATTCGACGTTGCTGGATTTACTACCTTACTTGAAGAGCAAAGGTGTGGGTGTGATAAGTGCTTCTCCATTAGCAATGGGCCTCCTTACAGAACAAGGTCCTCCTGAATGGCACCCTGCTTCCCCTGAGCTCAAGTCTGCAAGCAAAGCCGCAGTTGCTCACTGCAAATCAAAGGGCAAGAAGATCACAAAGTTAGCTCTGCAATACAGTTTAGCAAACAAGGAGATTTCGTCGGTGTTGGTTGGGATGAGCTCTGTCTCACAGGTAGAAGAAAATGTTGCAGCAGTTACAGAGCTTGAAAGTCTGGGGATGGATCAAGAAACTCTGTCTGAGGTTGAAGCTATTCTCGAGCCTGTAAAGAATCTGACATGGCCAAGTGGAATCCATCAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0010349 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016645 GO:0016646 GO:0018130 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045290 GO:0046364 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0070484 GO:0070485 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

319

Amino Acids

34.53

Weight (kDa)

5.49

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	19 - 286	4.3e-57	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33670
fragaria_vesca	FvH4_2g02330 FvH4_2g02330
malus_domestica	MD05G1113100.v1.1 MD10G1115600.v1.1
prunus_persica	Prupe.8G157600_v2.0.a1 Prupe.8G157600_v2.0.a1
pyrus_communis	pycom05g10830 pycom10g10010
rosa_chinensis	RchiOBHm_Chr6g0246091
rosa_laevigata	RLG00000015271
rosa_multiflora	Rmu_sc0004042.1_g000009 Rmu_sc0009451.1_g000013
rosa_roxburghii	Rroxscaffold_7G00214970
rosa_rugosa	Rorug05G0519000
rosa_samantha	Rh6AG033300 Rh6BG028800 Rh6CG029000 Rh6DG028100
rosa_wichuraiana	Rw6G002680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	65, 675
AccBSI	CCGCTC	1 cut(s)	76
AccII	CGCG	1 cut(s)	129
AciI	CCGC	2 cut(s)	74, 714
AclWI	GGATC	1 cut(s)	885
AcoI	YGGCCR	1 cut(s)	935
AcuI	CTGAAG	2 cut(s)	323, 410
AfiI	CCNNNNNNNGG	1 cut(s)	176
AflII	CTTAAG	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	598, 863, 902
AjnI	CCWGG	1 cut(s)	517
AluBI	AGCT	9 cut(s)	16, 23, 327, 343, 694, 761, 816, 859, 905
AluI	AGCT	9 cut(s)	16, 23, 327, 343, 694, 761, 816, 859, 905
Alw21I	GWGCWC	2 cut(s)	696, 818
Alw26I	GTCTC	3 cut(s)	146, 393, 826
AlwI	GGATC	1 cut(s)	885
AlwNI	CAGNNNCTG	2 cut(s)	433, 524
Ama87I	CYCGRG	1 cut(s)	911
AoxI	GGCC	2 cut(s)	643, 935
ApeKI	GCWGC	1 cut(s)	845
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
Asp700I	GAANNNNTTC	2 cut(s)	414, 906
AspLEI	GCGC	2 cut(s)	53, 129
AspS9I	GGNCC	3 cut(s)	92, 643, 662
AsuC2I	CCSGG	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	911
AvaII	GGWCC	2 cut(s)	92, 662
BalI	TGGCCA	1 cut(s)	937
BanI	GGYRCC	2 cut(s)	65, 675
BanII	GRGCYC	2 cut(s)	696, 818
BbsI	GAAGAC	3 cut(s)	79, 455, 467
Bbv12I	GWGCWC	2 cut(s)	696, 818
BbvI	GCAGC	1 cut(s)	857
BccI	CCATC	2 cut(s)	868, 957
BceAI	ACGGC	3 cut(s)	38, 98, 571
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	1 cut(s)	519
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	3 cut(s)	146, 393, 826
BfaI	CTAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	54
BfrI	CTTAAG	1 cut(s)	41
BisI	GCNGC	2 cut(s)	714, 846
BlsI	GCNGC	2 cut(s)	715, 847
Bme1390I	CCNGG	2 cut(s)	454, 519
Bme18I	GGWCC	2 cut(s)	92, 662
BmeT110I	CYCGRG	1 cut(s)	911
BmgT120I	GGNCC	3 cut(s)	92, 643, 662
BmiI	GGNNCC	2 cut(s)	67, 677
BmrFI	CCNGG	2 cut(s)	454, 519
BmsI	GCATC	1 cut(s)	100
BpiI	GAAGAC	3 cut(s)	79, 455, 467
BpmI	CTGGAG	1 cut(s)	501
Bpu10I	CCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	680
BpuMI	CCSGG	1 cut(s)	454
BsaI	GGTCTC	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	518
BsaXI	ACNNNNNCTCC	2 cut(s)	779, 809
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	95, 475
Bse3DI	GCAATG	2 cut(s)	364, 645
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	518
BseGI	GGATG	2 cut(s)	816, 879
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	2 cut(s)	364, 645
BseMII	CTCAG	4 cut(s)	183, 288, 681, 885
BseNI	ACTGG	2 cut(s)	95, 475
BseXI	GCAGC	1 cut(s)	857
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	645, 937
BshNI	GGYRCC	2 cut(s)	65, 675
BsiHKAI	GWGCWC	2 cut(s)	696, 818
BsiHKCI	CYCGRG	1 cut(s)	911
BsiSI	CCGG	1 cut(s)	454
BslFI	GGGAC	3 cut(s)	215, 225, 535
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	3 cut(s)	146, 393, 826
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	3 cut(s)	215, 225, 535
BsnI	GGCC	2 cut(s)	645, 937
Bso31I	GGTCTC	1 cut(s)	393
BsoBI	CYCGRG	1 cut(s)	911
Bsp1286I	GDGCHC	2 cut(s)	696, 818
Bsp143I	GATC	4 cut(s)	394, 505, 747, 877
BspACI	CCGC	2 cut(s)	74, 714
BspANI	GGCC	2 cut(s)	645, 937
BspCNI	CTCAG	4 cut(s)	184, 289, 682, 886
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	67, 677
BspPI	GGATC	1 cut(s)	885
BspQI	GCTCTTC	2 cut(s)	429, 593
BspT107I	GGYRCC	2 cut(s)	65, 675
BspTI	CTTAAG	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	393
BsrBI	CCGCTC	1 cut(s)	76
BsrDI	GCAATG	2 cut(s)	364, 645
BsrI	ACTGG	2 cut(s)	95, 475
BssECI	CCNNGG	1 cut(s)	518
BssMI	GATC	4 cut(s)	394, 505, 747, 877
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	5 cut(s)	124, 189, 526, 548, 773
Bst6I	CTCTTC	2 cut(s)	429, 593
BstAFI	CTTAAG	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	5 cut(s)	192, 258, 297, 690, 894
BstF5I	GGATG	2 cut(s)	816, 879
BstFNI	CGCG	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	53, 129
BstKTI	GATC	4 cut(s)	397, 508, 750, 880
BstMAI	GTCTC	3 cut(s)	146, 393, 826
BstMBI	GATC	4 cut(s)	394, 505, 747, 877
BstMWI	GCNNNNNNNGC	2 cut(s)	710, 719
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	2 cut(s)	452, 517
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	857
BstV2I	GAAGAC	3 cut(s)	79, 455, 467
BsuRI	GGCC	2 cut(s)	645, 937
BtsCI	GGATG	2 cut(s)	816, 879
BtsI	GCAGTG	1 cut(s)	724
BtsIMutI	CAGTG	4 cut(s)	185, 298, 468, 724
Cac8I	GCNNGC	1 cut(s)	706
CaiI	CAGNNNCTG	2 cut(s)	433, 524
CfoI	GCGC	2 cut(s)	53, 129
Cfr13I	GGNCC	3 cut(s)	92, 643, 662
CviAII	CATG	2 cut(s)	371, 933
DdeI	CTNAG	5 cut(s)	192, 258, 297, 690, 894
DpnI	GATC	4 cut(s)	396, 507, 749, 879
DpnII	GATC	4 cut(s)	394, 505, 747, 877
EaeI	YGGCCR	1 cut(s)	935
Eam1104I	CTCTTC	2 cut(s)	429, 593
EarI	CTCTTC	2 cut(s)	429, 593
Ecl136II	GAGCTC	2 cut(s)	694, 816
Eco24I	GRGCYC	2 cut(s)	696, 818
Eco31I	GGTCTC	1 cut(s)	393
Eco47I	GGWCC	2 cut(s)	92, 662
Eco53kI	GAGCTC	2 cut(s)	694, 816
Eco57I	CTGAAG	2 cut(s)	323, 410
Eco88I	CYCGRG	1 cut(s)	911
EcoICRI	GAGCTC	2 cut(s)	694, 816
EcoO109I	RGGNCCY	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	517
EcoT38I	GRGCYC	2 cut(s)	696, 818
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	2 cut(s)	374, 936
FaiI	YATR	8 cut(s)	177, 273, 351, 359, 372, 498, 544, 934
FaqI	GGGAC	3 cut(s)	215, 225, 535
FatI	CATG	2 cut(s)	370, 932
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	2 cut(s)	714, 846
FokI	GGATG	2 cut(s)	823, 886
FriOI	GRGCYC	2 cut(s)	696, 818
Fsp4HI	GCNGC	2 cut(s)	714, 846
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	2 cut(s)	52, 128
GluI	GCNGC	2 cut(s)	714, 846
GsuI	CTGGAG	1 cut(s)	501
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	645, 937
HapII	CCGG	1 cut(s)	454
HhaI	GCGC	2 cut(s)	53, 129
Hin1II	CATG	2 cut(s)	374, 936
Hin6I	GCGC	2 cut(s)	51, 127
HinP1I	GCGC	2 cut(s)	51, 127
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	3 cut(s)	566, 925, 945
HpaII	CCGG	1 cut(s)	454
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	7 cut(s)	80, 193, 399, 429, 895, 930, 954
Hpy188III	TCNNGA	5 cut(s)	392, 503, 668, 881, 911
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	3 cut(s)	119, 574, 799
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	5 cut(s)	124, 189, 526, 548, 773
HpyCH4IV	ACGT	1 cut(s)	572
HpyCH4V	TGCA	5 cut(s)	226, 704, 729, 766, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	710, 719
HpyF3I	CTNAG	5 cut(s)	192, 258, 297, 690, 894
HpySE526I	ACGT	1 cut(s)	572
Hsp92II	CATG	2 cut(s)	374, 936
HspAI	GCGC	2 cut(s)	51, 127
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	394, 505, 747, 877
LguI	GCTCTTC	2 cut(s)	429, 593
Lsp1109I	GCAGC	1 cut(s)	857
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	572
MaeIII	GTNAC	2 cut(s)	239, 850
MalI	GATC	4 cut(s)	396, 507, 749, 879
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	4 cut(s)	394, 505, 747, 877
MboII	GAAGA	9 cut(s)	79, 116, 148, 416, 460, 467, 610, 757, 845
MhlI	GDGCHC	2 cut(s)	696, 818
MlsI	TGGCCA	1 cut(s)	937
MluCI	AATT	1 cut(s)	414
MluNI	TGGCCA	1 cut(s)	937
Mox20I	TGGCCA	1 cut(s)	937
MroXI	GAANNNNTTC	2 cut(s)	414, 906
MscI	TGGCCA	1 cut(s)	937
MseI	TTAA	2 cut(s)	42, 561
MslI	CAYNNNNRTG	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	937
MspCI	CTTAAG	1 cut(s)	41
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	2 cut(s)	454, 519
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	710, 719
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	4 cut(s)	394, 505, 747, 877
NlaIII	CATG	2 cut(s)	374, 936
NlaIV	GGNNCC	2 cut(s)	67, 677
NmuCI	GTSAC	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	911
PciSI	GCTCTTC	2 cut(s)	429, 593
PdmI	GAANNNNTTC	2 cut(s)	414, 906
PfeI	GAWTC	3 cut(s)	566, 925, 945
PkrI	GCNGC	2 cut(s)	715, 847
PpuMI	RGGWCCY	1 cut(s)	662
Psp124BI	GAGCTC	2 cut(s)	696, 818
Psp5II	RGGWCCY	1 cut(s)	662
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	2 cut(s)	67, 677
PspPI	GGNCC	3 cut(s)	92, 643, 662
PspPPI	RGGWCCY	1 cut(s)	662
PstNI	CAGNNNCTG	2 cut(s)	433, 524
RseI	CAYNNNNRTG	1 cut(s)	369
SacI	GAGCTC	2 cut(s)	696, 818
SapI	GCTCTTC	2 cut(s)	429, 593
SaqAI	TTAA	2 cut(s)	42, 561
SatI	GCNGC	2 cut(s)	714, 846
Sau3AI	GATC	4 cut(s)	394, 505, 747, 877
Sau96I	GGNCC	3 cut(s)	92, 643, 662
ScrFI	CCNGG	2 cut(s)	454, 519
SduI	GDGCHC	2 cut(s)	696, 818
SfaNI	GCATC	1 cut(s)	100
Sfr274I	CTCGAG	1 cut(s)	911
SinI	GGWCC	2 cut(s)	92, 662
SlaI	CTCGAG	1 cut(s)	911
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	3 cut(s)	41, 695, 911
SmoI	CTYRAG	3 cut(s)	41, 695, 911
Sse9I	AATT	1 cut(s)	414
SsiI	CCGC	2 cut(s)	74, 714
SspMI	CTAG	1 cut(s)	234
SstI	GAGCTC	2 cut(s)	696, 818
StyD4I	CCNGG	2 cut(s)	452, 517
TaaI	ACNGT	5 cut(s)	124, 189, 526, 548, 773
TaiI	ACGT	1 cut(s)	575
TaqI	TCGA	6 cut(s)	19, 159, 508, 528, 569, 912
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	1 cut(s)	414
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	3 cut(s)	566, 925, 945
Tru1I	TTAA	2 cut(s)	42, 561
Tru9I	TTAA	2 cut(s)	42, 561
TscAI	CASTG	4 cut(s)	192, 298, 475, 731
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	845
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	353, 448
TspGWI	ACGGA	2 cut(s)	128, 468
TspRI	CASTG	4 cut(s)	192, 298, 475, 731
Vha464I	CTTAAG	1 cut(s)	41
VpaK11BI	GGWCC	2 cut(s)	92, 662
XhoI	CTCGAG	1 cut(s)	911
XmnI	GAANNNNTTC	2 cut(s)	414, 906
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.