Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011375

Physical Location & Seq

Genomic Coordinates Reverse (-)

1915545 .. 1919398

Gene Structure 3854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGACTATACATTATTCGGTAGTATGGTGTGGTACATGCCCCATTGATACTCAAATTCTAGCAATAAAGCATGGGCATTTTAGTTGCTCCAGACCCAACCAAGCCAACCAAGATATTCAGTTTCCAGAGACACACAATTCCCCACTTCACTACTACTTCACTTCCCAAATCTCTGTCAAACCAATGGCCAAGGTCGAGCTTCGAGAACTGGGCAACACAGGCCTCAAGCTCAGCTGCGTCGGCTTCGGGGCTTCCCCTCTCGGCAACGTCTTCGGCCCTGTCTCTGACGAAGAAGCCATCGGCTCCGTTCGCGAAGCCTTTCGCCGAGGCATCAACTTCTTCGACACCTCTCCGTACTATGGAGGGACATTGTCGGAGAAGGTGCTTGGTAAGACACTAAAGGCTCTGGGAGTTCCGAGGAGTGAGTATATTGTGGCAACAAAGTGCGGACGATATGCTGAAGGTTTTGATTTTAGTGCTGATAGAGTGACTAAGAGCATTGATGAGAGCTTGGAAAGGTTGCAGCTAGATTATGTGGATATATTGCAATGCCATGACATTGAATTTGGGAATCTCGATCAGATTGTCAATGAGACAATTCCGGCTCTACAGAAACTGAAAGAAGCAGGGAAAATTCGTTTCATTGGTATCACGGGACTTCCTTTAGGAATTTTCACATATGTTCTTGACCGGGTGCCACCTGGCACCGTGGACGTTGTTCTGTCATATTGCCATTACAGTATTAATGATTCATCACTGGAGGATCTACTGCCTTACCTTAAGAGCAAAGGTGTTGGCGTAGTTAGTGCATCTCCACTGGCAATGGGGCTTCTCACCGAGCGTGGTCCTCCAGAATGGCATCCAGCATCTCCTGAACTCAAGTCTGCCTGTCAAGCTGCTGCTTTTTATTGTAAAGAGAGAGGGAAGAACATATCAAAGTTAGCTATGCAGTACAGCTTGTCAAATAAGGATATCGCATCAGTGCTGGTTGGCATGAACTCCATTAAACAGGTCGAGGAGAATGTCGCTGCTGCTGTGGAGCTTTCAACTGTTGGGAAAGATGAGCAAACCATATCAGAGGTTGAAGCTATTCTGAAACCTGTCAAGAATCAGACTTGGCCGAGTGGAATCCAGCAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0010349 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016645 GO:0016646 GO:0018130 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045290 GO:0046364 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0070484 GO:0070485 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

381

Amino Acids

41.59

Weight (kDa)

5.82

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	80 - 349	9.9e-57	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33670
fragaria_vesca	FvH4_2g02330 FvH4_2g02330
malus_domestica	MD05G1113100.v1.1 MD10G1115600.v1.1
prunus_persica	Prupe.8G157600_v2.0.a1 Prupe.8G157600_v2.0.a1
pyrus_communis	pycom05g10830 pycom10g10010
rosa_chinensis	RchiOBHm_Chr6g0246091
rosa_laevigata	RLG00000015271
rosa_multiflora	Rmu_sc0004042.1_g000009 Rmu_sc0009451.1_g000013
rosa_roxburghii	Rroxscaffold_7G00214970
rosa_rugosa	Rorug05G0519000
rosa_samantha	Rh6AG033300 Rh6BG028800 Rh6CG029000 Rh6DG028100
rosa_wichuraiana	Rw6G002680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	694, 704
AccII	CGCG	1 cut(s)	312
AciI	CCGC	1 cut(s)	447
AclWI	GGATC	1 cut(s)	771
AcoI	YGGCCR	2 cut(s)	186, 1118
AcsI	RAATTY	4 cut(s)	54, 563, 633, 669
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	3 cut(s)	34, 356, 953
AfiI	CCNNNNNNNGG	1 cut(s)	359
AflII	CTTAAG	1 cut(s)	779
AgsI	TTSAA	3 cut(s)	563, 1047, 1085
AjnI	CCWGG	1 cut(s)	700
Alw26I	GTCTC	3 cut(s)	122, 286, 587
AlwI	GGATC	1 cut(s)	771
AlwNI	CAGNNNCTG	1 cut(s)	616
AoxI	GGCC	4 cut(s)	186, 220, 274, 1118
ApeKI	GCWGC	6 cut(s)	234, 523, 896, 899, 1028, 1031
ApoI	RAATTY	4 cut(s)	54, 563, 633, 669
ArsI	GACNNNNNNTTYG	2 cut(s)	548, 580
AseI	ATTAAT	1 cut(s)	744
Asp700I	GAANNNNTTC	2 cut(s)	318, 1089
AspS9I	GGNCC	2 cut(s)	275, 845
AsuC2I	CCSGG	1 cut(s)	692
AsuHPI	GGTGA	1 cut(s)	826
AvaII	GGWCC	1 cut(s)	845
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	694, 704
BbsI	GAAGAC	1 cut(s)	262
BbvI	GCAGC	6 cut(s)	221, 535, 883, 886, 1015, 1018
BccI	CCATC	1 cut(s)	305
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BciT130I	CCWGG	1 cut(s)	702
BcnI	CCSGG	1 cut(s)	692
BcoDI	GTCTC	3 cut(s)	122, 286, 587
BfaI	CTAG	2 cut(s)	59, 527
BfmI	CTRYAG	1 cut(s)	608
BfrI	CTTAAG	1 cut(s)	779
BisI	GCNGC	6 cut(s)	235, 524, 897, 900, 1029, 1032
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	6 cut(s)	236, 525, 898, 901, 1030, 1033
Bme1390I	CCNGG	2 cut(s)	692, 702
Bme18I	GGWCC	1 cut(s)	845
BmgT120I	GGNCC	2 cut(s)	275, 845
BmiI	GGNNCC	3 cut(s)	304, 696, 706
BmrFI	CCNGG	2 cut(s)	692, 702
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	5 cut(s)	339, 818, 868, 875, 986
BmuI	ACTGGG	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	262
BpmI	CTGGAG	3 cut(s)	73, 779, 834
Bpu1102I	GCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	2 cut(s)	209, 863
BpuMI	CCSGG	1 cut(s)	692
BsaJI	CCNNGG	4 cut(s)	189, 325, 416, 708
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	3 cut(s)	213, 762, 822
Bse3DI	GCAATG	2 cut(s)	554, 828
BseBI	CCWGG	1 cut(s)	702
BseDI	CCNNGG	4 cut(s)	189, 325, 416, 708
BseGI	GGATG	1 cut(s)	859
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMI	GCAATG	2 cut(s)	554, 828
BseMII	CTCAG	1 cut(s)	244
BseNI	ACTGG	3 cut(s)	213, 762, 822
BseRI	GAGGAG	2 cut(s)	433, 1031
BseXI	GCAGC	6 cut(s)	221, 535, 883, 886, 1015, 1018
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	4 cut(s)	188, 222, 276, 1120
BshNI	GGYRCC	2 cut(s)	694, 704
BsiSI	CCGG	2 cut(s)	602, 691
BslFI	GGGAC	2 cut(s)	379, 669
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmAI	GTCTC	3 cut(s)	122, 286, 587
BsmFI	GGGAC	2 cut(s)	379, 669
BsnI	GGCC	4 cut(s)	188, 222, 276, 1120
Bsp143I	GATC	2 cut(s)	577, 763
Bsp1720I	GCTNAGC	1 cut(s)	230
Bsp68I	TCGCGA	1 cut(s)	312
BspACI	CCGC	1 cut(s)	447
BspANI	GGCC	4 cut(s)	188, 222, 276, 1120
BspCNI	CTCAG	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	3 cut(s)	304, 696, 706
BspPI	GGATC	1 cut(s)	771
BspT107I	GGYRCC	2 cut(s)	694, 704
BspTI	CTTAAG	1 cut(s)	779
BsrDI	GCAATG	2 cut(s)	554, 828
BsrI	ACTGG	3 cut(s)	213, 762, 822
BssECI	CCNNGG	4 cut(s)	189, 325, 416, 708
BssMI	GATC	2 cut(s)	577, 763
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	3 cut(s)	709, 740, 1051
BstAFI	CTTAAG	1 cut(s)	779
BstDEI	CTNAG	2 cut(s)	230, 492
BstDSI	CCRYGG	1 cut(s)	708
BstF5I	GGATG	1 cut(s)	859
BstFNI	CGCG	1 cut(s)	312
BstKTI	GATC	2 cut(s)	580, 766
BstMAI	GTCTC	3 cut(s)	122, 286, 587
BstMBI	GATC	2 cut(s)	577, 763
BstMWI	GCNNNNNNNGC	4 cut(s)	219, 240, 309, 893
BstNI	CCWGG	1 cut(s)	702
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	2 cut(s)	690, 700
BstSFI	CTRYAG	1 cut(s)	608
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	6 cut(s)	221, 535, 883, 886, 1015, 1018
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
BsuRI	GGCC	4 cut(s)	188, 222, 276, 1120
BtgI	CCRYGG	1 cut(s)	708
BtsCI	GGATG	1 cut(s)	859
BtsIMutI	CAGTG	3 cut(s)	755, 815, 987
BtuMI	TCGCGA	1 cut(s)	312
CaiI	CAGNNNCTG	1 cut(s)	616
Cfr13I	GGNCC	2 cut(s)	275, 845
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	3 cut(s)	33, 355, 952
CviAII	CATG	4 cut(s)	36, 71, 554, 994
CviQI	GTAC	3 cut(s)	33, 355, 952
DdeI	CTNAG	2 cut(s)	230, 492
DpnI	GATC	2 cut(s)	579, 765
DpnII	GATC	2 cut(s)	577, 763
EaeI	YGGCCR	2 cut(s)	186, 1118
Eco130I	CCWWGG	1 cut(s)	189
Eco147I	AGGCCT	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	973
Eco47I	GGWCC	1 cut(s)	845
Eco57I	CTGAAG	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	700
EcoRV	GATATC	1 cut(s)	973
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	4 cut(s)	39, 74, 557, 997
FaqI	GGGAC	2 cut(s)	379, 669
FatI	CATG	4 cut(s)	35, 70, 553, 993
FauNDI	CATATG	1 cut(s)	679
Fnu4HI	GCNGC	6 cut(s)	235, 524, 897, 900, 1029, 1032
FokI	GGATG	1 cut(s)	846
Fsp4HI	GCNGC	6 cut(s)	235, 524, 897, 900, 1029, 1032
FspBI	CTAG	2 cut(s)	59, 527
GluI	GCNGC	6 cut(s)	235, 524, 897, 900, 1029, 1032
GsuI	CTGGAG	3 cut(s)	73, 779, 834
HaeIII	GGCC	4 cut(s)	188, 222, 276, 1120
HapII	CCGG	2 cut(s)	602, 691
HgaI	GACGC	1 cut(s)	226
Hin1II	CATG	4 cut(s)	39, 74, 557, 997
HinfI	GANTC	4 cut(s)	571, 749, 1108, 1128
HpaII	CCGG	2 cut(s)	602, 691
HphI	GGTGA	1 cut(s)	826
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188I	TCNGA	7 cut(s)	286, 376, 417, 582, 1078, 1095, 1113
Hpy188III	TCNNGA	9 cut(s)	90, 125, 203, 311, 575, 686, 851, 872, 1105
Hpy8I	GTNNAC	1 cut(s)	712
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	373, 455
HpyCH4III	ACNGT	3 cut(s)	709, 740, 1051
HpyCH4IV	ACGT	2 cut(s)	267, 714
HpyCH4V	TGCA	4 cut(s)	523, 547, 809, 949
HpyF10VI	GCNNNNNNNGC	4 cut(s)	219, 240, 309, 893
HpyF3I	CTNAG	2 cut(s)	230, 492
HpySE526I	ACGT	2 cut(s)	267, 714
Hsp92II	CATG	4 cut(s)	39, 74, 557, 997
Kzo9I	GATC	2 cut(s)	577, 763
LmnI	GCTCC	3 cut(s)	92, 308, 1039
Lsp1109I	GCAGC	6 cut(s)	221, 535, 883, 886, 1015, 1018
LweI	GCATC	5 cut(s)	339, 818, 868, 875, 986
MaeI	CTAG	2 cut(s)	59, 527
MaeII	ACGT	2 cut(s)	267, 714
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	2 cut(s)	579, 765
MboI	GATC	2 cut(s)	577, 763
MboII	GAAGA	4 cut(s)	262, 302, 331, 937
MflI	RGATCY	1 cut(s)	763
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	6 cut(s)	54, 136, 563, 597, 633, 669
MluNI	TGGCCA	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	354
Mox20I	TGGCCA	1 cut(s)	188
MroXI	GAANNNNTTC	2 cut(s)	318, 1089
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	3 cut(s)	744, 780, 1005
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	234
MspCI	CTTAAG	1 cut(s)	779
MspI	CCGG	2 cut(s)	602, 691
MspR9I	CCNGG	2 cut(s)	692, 702
MvaI	CCWGG	1 cut(s)	702
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	4 cut(s)	219, 240, 309, 893
NciI	CCSGG	1 cut(s)	692
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	2 cut(s)	577, 763
NlaIII	CATG	4 cut(s)	39, 74, 557, 997
NlaIV	GGNNCC	3 cut(s)	304, 696, 706
NmeAIII	GCCGAG	2 cut(s)	240, 350
NmuCI	GTSAC	1 cut(s)	487
NruI	TCGCGA	1 cut(s)	312
NspI	RCATGY	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	222
PdmI	GAANNNNTTC	2 cut(s)	318, 1089
PfeI	GAWTC	4 cut(s)	571, 749, 1108, 1128
PflFI	GACNNNGTC	1 cut(s)	370
PkrI	GCNGC	6 cut(s)	236, 525, 898, 901, 1030, 1033
PshBI	ATTAAT	1 cut(s)	744
Psp6I	CCWGG	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	700
PspN4I	GGNNCC	3 cut(s)	304, 696, 706
PspPI	GGNCC	2 cut(s)	275, 845
PstNI	CAGNNNCTG	1 cut(s)	616
PsuI	RGATCY	1 cut(s)	763
PsyI	GACNNNGTC	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	234
RruI	TCGCGA	1 cut(s)	312
RsaI	GTAC	3 cut(s)	34, 356, 953
RsaNI	GTAC	3 cut(s)	33, 355, 952
SaqAI	TTAA	3 cut(s)	744, 780, 1005
SatI	GCNGC	6 cut(s)	235, 524, 897, 900, 1029, 1032
Sau3AI	GATC	2 cut(s)	577, 763
Sau96I	GGNCC	2 cut(s)	275, 845
ScrFI	CCNGG	2 cut(s)	692, 702
SfaNI	GCATC	5 cut(s)	339, 818, 868, 875, 986
SfcI	CTRYAG	1 cut(s)	608
SinI	GGWCC	1 cut(s)	845
SmlI	CTYRAG	3 cut(s)	224, 779, 878
SmoI	CTYRAG	3 cut(s)	224, 779, 878
Sse9I	AATT	6 cut(s)	54, 136, 563, 597, 633, 669
SseBI	AGGCCT	1 cut(s)	222
SsiI	CCGC	1 cut(s)	447
SspMI	CTAG	2 cut(s)	59, 527
StuI	AGGCCT	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	690, 700
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	3 cut(s)	709, 740, 1051
TaiI	ACGT	2 cut(s)	270, 717
TaqI	TCGA	5 cut(s)	195, 202, 342, 576, 1014
TasI	AATT	6 cut(s)	54, 136, 563, 597, 633, 669
TatI	WGTACW	1 cut(s)	951
TfiI	GAWTC	4 cut(s)	571, 749, 1108, 1128
Tru1I	TTAA	3 cut(s)	744, 780, 1005
Tru9I	TTAA	3 cut(s)	744, 780, 1005
TscAI	CASTG	3 cut(s)	762, 822, 987
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	6 cut(s)	234, 523, 896, 899, 1028, 1031
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	3 cut(s)	631, 741, 1010
TspGWI	ACGGA	2 cut(s)	295, 342
TspRI	CASTG	3 cut(s)	762, 822, 987
Tth111I	GACNNNGTC	1 cut(s)	370
Vha464I	CTTAAG	1 cut(s)	779
VpaK11BI	GGWCC	1 cut(s)	845
VspI	ATTAAT	1 cut(s)	744
XapI	RAATTY	4 cut(s)	54, 563, 633, 669
XceI	RCATGY	1 cut(s)	39
XmnI	GAANNNNTTC	2 cut(s)	318, 1089
XspI	CTAG	2 cut(s)	59, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.