Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011375

Physical Location & Seq

Genomic Coordinates Forward (+)

14294973 .. 14296976

Gene Structure 2004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCTTCACAACCGCTGCCAAAGGTTGAACTCCGAGAGCTTGGCAATACAGGCCTCAAGCTCAGCTGCGTCGGCTTCGGTGCCTCCCCTCTCGGCAACGTCTTCGGTCCCGTCTCCGATGACGAAGCCATCGGCTCTGTTCGCGAAGCCTTCCGCCGAGGCATCAACTTCTTTGACACCTCTCCGTATTATGGAGGGACTTTGTCAGAAAAGGTGCTTGGTAAAACGCTAAAAGCTCTAGGTGTGCTGAGAAGCGAGTACGTTGTGGCAACCAAGTGTGGACGCTATGCTGACGGTTTTGATTTCAGTGCTGATAGAGTGACTAAGAGCATTGATGAGAGCTTGGAGAGATTGCAGCTAGATTACGTCGATATACTGCAATGCCATGACATTGAATTTGGGTCTCTGGACCAGATTGTAAACGAGACAATCCCTGCCCTAAAGAAACTGAAAGAAGCAGGGAAGATTCGTTTCATTGGTATCACAGGACTTCCATTGGGAATTTTCACATATGTTCTTGATCACGTACCAGCTGGCACAGTGGACGTGGTCCTGTCATATTGCCACTACGGTATTAATGATTCAACATTGGAGGATCTACTACCATACCTCAAGAGCAAAGGTGTTGGAATCATTAGTGCTTCTCCACTTGCAATGGGTCTGCTTACTGAGAGTGGTCCTCCAGAATGGCACCCCGCATCTGCTGAACTGAAGTCTGCCTGCCGAGCTGCTGCTGTCTATTGTAAAGAGAGAGGGAATAATATTTCAAAGTTGGCTCTGCAATACAGCTTGTCCAATAAGGATATCTCATCAGTGCTGGTCGGCATGAACTCTATTAAACAGGTTGAGGAAAATGTCACTGCTGCTGTGGAGCTCGCGACTATTGGCAAGAATGAGAAAACTCTAGCAGAGGTTGAAGCTATTCTGAAACCGGTGAAGAATCAGACATGGCCTAGCGGAATCCAGCAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0010349 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016645 GO:0016646 GO:0018130 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045290 GO:0046364 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0070484 GO:0070485 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

325

Amino Acids

34.93

Weight (kDa)

5.55

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33670
fragaria_vesca	FvH4_2g02330 FvH4_2g02330
malus_domestica	MD05G1113100.v1.1 MD10G1115600.v1.1
prunus_persica	Prupe.8G157600_v2.0.a1 Prupe.8G157600_v2.0.a1
pyrus_communis	pycom05g10830 pycom10g10010
rosa_chinensis	RchiOBHm_Chr6g0246091
rosa_laevigata	RLG00000015271
rosa_multiflora	Rmu_sc0004042.1_g000009 Rmu_sc0009451.1_g000013
rosa_roxburghii	Rroxscaffold_7G00214970
rosa_rugosa	Rorug05G0519000
rosa_samantha	Rh6AG033300 Rh6BG028800 Rh6CG029000 Rh6DG028100
rosa_wichuraiana	Rw6G002680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 690
AccII	CGCG	2 cut(s)	144, 878
AciI	CCGC	4 cut(s)	14, 154, 696, 957
AclWI	GGATC	1 cut(s)	603
AcsI	RAATTY	2 cut(s)	395, 501
AcuI	CTGAAG	1 cut(s)	731
AfaI	GTAC	2 cut(s)	260, 528
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgeI	ACCGGT	1 cut(s)	931
AgsI	TTSAA	5 cut(s)	29, 395, 585, 768, 917
AjiI	CACGTC	1 cut(s)	547
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
Alw21I	GWGCWC	1 cut(s)	876
Alw26I	GTCTC	3 cut(s)	118, 408, 419
AlwI	GGATC	1 cut(s)	603
AoxI	GGCC	2 cut(s)	52, 950
ApeKI	GCWGC	6 cut(s)	16, 66, 355, 728, 731, 863
ApoI	RAATTY	2 cut(s)	395, 501
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AseI	ATTAAT	1 cut(s)	576
AsiGI	ACCGGT	1 cut(s)	931
Asp700I	GAANNNNTTC	1 cut(s)	921
AspS9I	GGNCC	4 cut(s)	107, 409, 550, 677
AsuHPI	GGTGA	1 cut(s)	946
AvaII	GGWCC	4 cut(s)	107, 409, 550, 677
BanI	GGYRCC	2 cut(s)	80, 690
BanII	GRGCYC	1 cut(s)	876
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	876
BbvI	GCAGC	6 cut(s)	3, 53, 367, 715, 718, 850
BccI	CCATC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	3 cut(s)	118, 408, 419
BfaI	CTAG	4 cut(s)	239, 359, 905, 954
BisI	GCNGC	6 cut(s)	17, 67, 356, 729, 732, 864
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	6 cut(s)	18, 68, 357, 730, 733, 865
Bme18I	GGWCC	4 cut(s)	107, 409, 550, 677
BmgBI	CACGTC	1 cut(s)	547
BmgT120I	GGNCC	4 cut(s)	107, 409, 550, 677
BmiI	GGNNCC	3 cut(s)	82, 109, 692
BmsI	GCATC	2 cut(s)	171, 707
BpiI	GAAGAC	1 cut(s)	94
BplI	GAGNNNNNCTC	2 cut(s)	664, 696
BpmI	CTGGAG	1 cut(s)	666
Bpu1102I	GCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	2 cut(s)	41, 596
BsaAI	YACGTR	1 cut(s)	526
BsaI	GGTCTC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	157
BsaWI	WCCGGW	1 cut(s)	931
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse118I	RCCGGY	1 cut(s)	931
Bse3DI	GCAATG	2 cut(s)	386, 660
BseDI	CCNNGG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMI	GCAATG	2 cut(s)	386, 660
BseMII	CTCAG	3 cut(s)	76, 239, 660
BseXI	GCAGC	6 cut(s)	3, 53, 367, 715, 718, 850
Bsh1236I	CGCG	2 cut(s)	144, 878
BshFI	GGCC	2 cut(s)	54, 952
BshNI	GGYRCC	2 cut(s)	80, 690
BshTI	ACCGGT	1 cut(s)	931
BsiHKAI	GWGCWC	1 cut(s)	876
BsiSI	CCGG	1 cut(s)	932
BslFI	GGGAC	2 cut(s)	93, 211
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	3 cut(s)	118, 408, 419
BsmBI	CGTCTC	1 cut(s)	118
BsmFI	GGGAC	2 cut(s)	93, 211
BsnI	GGCC	2 cut(s)	54, 952
Bso31I	GGTCTC	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	876
Bsp143I	GATC	2 cut(s)	520, 595
Bsp1720I	GCTNAGC	1 cut(s)	62
Bsp68I	TCGCGA	2 cut(s)	144, 878
BspACI	CCGC	4 cut(s)	14, 154, 696, 957
BspANI	GGCC	2 cut(s)	54, 952
BspCNI	CTCAG	3 cut(s)	75, 240, 661
BspFNI	CGCG	2 cut(s)	144, 878
BspLI	GGNNCC	3 cut(s)	82, 109, 692
BspPI	GGATC	1 cut(s)	603
BspT107I	GGYRCC	2 cut(s)	80, 690
BspTNI	GGTCTC	1 cut(s)	408
BsrDI	GCAATG	2 cut(s)	386, 660
BsrFI	RCCGGY	1 cut(s)	931
BssAI	RCCGGY	1 cut(s)	931
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	2 cut(s)	520, 595
Bst4CI	ACNGT	3 cut(s)	296, 541, 572
BstBAI	YACGTR	1 cut(s)	526
BstC8I	GCNNGC	3 cut(s)	535, 721, 876
BstDEI	CTNAG	4 cut(s)	62, 248, 324, 669
BstFNI	CGCG	2 cut(s)	144, 878
BstKTI	GATC	2 cut(s)	523, 598
BstMAI	GTCTC	3 cut(s)	118, 408, 419
BstMBI	GATC	2 cut(s)	520, 595
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 72, 141, 725
BstUI	CGCG	2 cut(s)	144, 878
BstV1I	GCAGC	6 cut(s)	3, 53, 367, 715, 718, 850
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BsuRI	GGCC	2 cut(s)	54, 952
BtrI	CACGTC	1 cut(s)	547
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	4 cut(s)	313, 546, 819, 858
BtuMI	TCGCGA	2 cut(s)	144, 878
Cac8I	GCNNGC	3 cut(s)	535, 721, 876
Cfr10I	RCCGGY	1 cut(s)	931
Cfr13I	GGNCC	4 cut(s)	107, 409, 550, 677
CseI	GACGC	2 cut(s)	58, 291
Csp6I	GTAC	2 cut(s)	259, 527
CspAI	ACCGGT	1 cut(s)	931
CviAII	CATG	3 cut(s)	386, 826, 948
CviQI	GTAC	2 cut(s)	259, 527
DdeI	CTNAG	4 cut(s)	62, 248, 324, 669
DpnI	GATC	2 cut(s)	522, 597
DpnII	GATC	2 cut(s)	520, 595
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	874
Eco147I	AGGCCT	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	876
Eco31I	GGTCTC	1 cut(s)	408
Eco32I	GATATC	1 cut(s)	805
Eco47I	GGWCC	4 cut(s)	107, 409, 550, 677
Eco53kI	GAGCTC	1 cut(s)	874
Eco57I	CTGAAG	1 cut(s)	731
EcoICRI	GAGCTC	1 cut(s)	874
EcoRV	GATATC	1 cut(s)	805
EcoT38I	GRGCYC	1 cut(s)	876
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	3 cut(s)	389, 829, 951
FaqI	GGGAC	2 cut(s)	93, 211
FatI	CATG	3 cut(s)	385, 825, 947
FauI	CCCGC	1 cut(s)	703
FauNDI	CATATG	1 cut(s)	511
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	6 cut(s)	17, 67, 356, 729, 732, 864
FriOI	GRGCYC	1 cut(s)	876
Fsp4HI	GCNGC	6 cut(s)	17, 67, 356, 729, 732, 864
FspBI	CTAG	4 cut(s)	239, 359, 905, 954
GluI	GCNGC	6 cut(s)	17, 67, 356, 729, 732, 864
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	2 cut(s)	54, 952
HapII	CCGG	1 cut(s)	932
HgaI	GACGC	2 cut(s)	58, 291
Hin1II	CATG	3 cut(s)	389, 829, 951
HinfI	GANTC	5 cut(s)	466, 581, 630, 940, 960
HpaII	CCGG	1 cut(s)	932
HphI	GGTGA	1 cut(s)	946
Hpy166II	GTNNAC	3 cut(s)	281, 421, 544
Hpy188I	TCNGA	5 cut(s)	35, 118, 208, 927, 945
Hpy188III	TCNNGA	6 cut(s)	143, 407, 518, 613, 683, 877
Hpy8I	GTNNAC	3 cut(s)	281, 421, 544
Hpy99I	CGWCG	2 cut(s)	74, 371
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	3 cut(s)	296, 541, 572
HpyCH4IV	ACGT	5 cut(s)	99, 261, 366, 525, 546
HpyCH4V	TGCA	4 cut(s)	355, 379, 653, 781
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 72, 141, 725
HpyF3I	CTNAG	4 cut(s)	62, 248, 324, 669
HpySE526I	ACGT	5 cut(s)	99, 261, 366, 525, 546
Hsp92II	CATG	3 cut(s)	389, 829, 951
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	2 cut(s)	520, 595
LmnI	GCTCC	1 cut(s)	871
Lsp1109I	GCAGC	6 cut(s)	3, 53, 367, 715, 718, 850
LweI	GCATC	2 cut(s)	171, 707
MaeI	CTAG	4 cut(s)	239, 359, 905, 954
MaeII	ACGT	5 cut(s)	99, 261, 366, 525, 546
MaeIII	GTNAC	2 cut(s)	319, 856
MalI	GATC	2 cut(s)	522, 597
MboI	GATC	2 cut(s)	520, 595
MboII	GAAGA	3 cut(s)	94, 475, 949
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	1 cut(s)	876
MluCI	AATT	2 cut(s)	395, 501
MmeI	TCCRAC	1 cut(s)	607
MroXI	GAANNNNTTC	1 cut(s)	921
MseI	TTAA	2 cut(s)	576, 837
MspA1I	CMGCKG	3 cut(s)	16, 66, 533
MspI	CCGG	1 cut(s)	932
MvnI	CGCG	2 cut(s)	144, 878
MwoI	GCNNNNNNNGC	4 cut(s)	51, 72, 141, 725
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	2 cut(s)	520, 595
NlaIII	CATG	3 cut(s)	389, 829, 951
NlaIV	GGNNCC	3 cut(s)	82, 109, 692
NmeAIII	GCCGAG	3 cut(s)	72, 182, 749
NmuCI	GTSAC	2 cut(s)	319, 856
NruI	TCGCGA	2 cut(s)	144, 878
PceI	AGGCCT	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	921
PfeI	GAWTC	5 cut(s)	466, 581, 630, 940, 960
PflFI	GACNNNGTC	2 cut(s)	202, 548
PinAI	ACCGGT	1 cut(s)	931
PkrI	GCNGC	6 cut(s)	18, 68, 357, 730, 733, 865
Ppu21I	YACGTR	1 cut(s)	526
PshBI	ATTAAT	1 cut(s)	576
Psp124BI	GAGCTC	1 cut(s)	876
PspN4I	GGNNCC	3 cut(s)	82, 109, 692
PspPI	GGNCC	4 cut(s)	107, 409, 550, 677
PsuI	RGATCY	1 cut(s)	595
PsyI	GACNNNGTC	2 cut(s)	202, 548
PvuII	CAGCTG	2 cut(s)	66, 533
RruI	TCGCGA	2 cut(s)	144, 878
RsaI	GTAC	2 cut(s)	260, 528
RsaNI	GTAC	2 cut(s)	259, 527
SacI	GAGCTC	1 cut(s)	876
SaqAI	TTAA	2 cut(s)	576, 837
SatI	GCNGC	6 cut(s)	17, 67, 356, 729, 732, 864
Sau3AI	GATC	2 cut(s)	520, 595
Sau96I	GGNCC	4 cut(s)	107, 409, 550, 677
SduI	GDGCHC	1 cut(s)	876
SfaNI	GCATC	2 cut(s)	171, 707
SinI	GGWCC	4 cut(s)	107, 409, 550, 677
SmlI	CTYRAG	2 cut(s)	56, 611
SmoI	CTYRAG	2 cut(s)	56, 611
Sse9I	AATT	2 cut(s)	395, 501
SseBI	AGGCCT	1 cut(s)	54
SsiI	CCGC	4 cut(s)	14, 154, 696, 957
SspI	AATATT	1 cut(s)	763
SspMI	CTAG	4 cut(s)	239, 359, 905, 954
SstI	GAGCTC	1 cut(s)	876
StuI	AGGCCT	1 cut(s)	54
TaaI	ACNGT	3 cut(s)	296, 541, 572
TaiI	ACGT	5 cut(s)	102, 264, 369, 528, 549
TaqI	TCGA	1 cut(s)	369
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	395, 501
TfiI	GAWTC	5 cut(s)	466, 581, 630, 940, 960
Tru1I	TTAA	2 cut(s)	576, 837
Tru9I	TTAA	2 cut(s)	576, 837
TscAI	CASTG	4 cut(s)	313, 546, 819, 865
TseFI	GTSAC	2 cut(s)	319, 856
TseI	GCWGC	6 cut(s)	16, 66, 355, 728, 731, 863
Tsp45I	GTSAC	2 cut(s)	319, 856
TspDTI	ATGAA	2 cut(s)	463, 842
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	4 cut(s)	313, 546, 819, 865
Tth111I	GACNNNGTC	2 cut(s)	202, 548
VpaK11BI	GGWCC	4 cut(s)	107, 409, 550, 677
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	2 cut(s)	395, 501
XmnI	GAANNNNTTC	1 cut(s)	921
XspI	CTAG	4 cut(s)	239, 359, 905, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.