Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0011375

Physical Location & Seq

Genomic Coordinates Reverse (-)

4108164 .. 4229045

Gene Structure 120882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG033300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCCAAGGTTGAACTTCGAGAACTGGGTAACACAGGGCTCAAGCTCAGCTGCGTTGGCTTCGGCGCTTCCCCTCTCGGCAACGTCTTCGGCCCAGTCTCCGACGAAGAAGCCATCGGCTCCGTTCGCGAAGCTTTTCGCCGGGGCATCAACTTCTTCGACACCTCTCCGTATGTAAAATCTCATCCTCCGCAGTTTCTATGTACTATGGAGGGACAAGTGCTTGGTAAAACACTAAAGGCTCTAGGAGTTCCAAGGAGTGAGTATATTGTGGCAACGAAGTGCGGACGATATGCTGAAGGTTTCGATTTCAGTGCTGATAGAGTGACTAAGAGCATTGATGAGAGCTTGGAAAGGTTGCAGCTAGATTACGTGGATATATTGCAATGCCATGACATTGAATTTGGGAATCTCGATCAGATTGTCAATGAGACAATTCCCGCTCTACAGAAACTGAAAGAAGCAGGGAAGATCCGTTTCATTGGTATCACGGGACTTCCTTTGGGAGTTTTCACATATGTTCTTGACCGGGTACCACCTGGCACAGTGGACGTTGTTCTGTCATATTGCCATTACAGTATTAATGATTCAGCACTGGAGGATTTACTGCCTTACCTGAAGAGCAAAGGTGTTGGTGTAATTAGTGCTTCTCCACTTGCAATGGGGCTTCTCACTGAGCGTGGTCCTCCAGAATGGCATCCAGCATCTCCTGAACTCAAGTCTACTTGTCAAGCTGCTGCTTTGTATTGTAAAGAGAGAGGGAAGAATATTTCAAAGTTAGCTATGCAATACAGCTTGTCCAATAAGGATATCTCATCAGTGCTGGTTGGCATGAACTCTATTAAACAGGTTGAGGAAAATGTTGCTGCTGCTGTGGAGCTTTCAACTGTTGGGAAAGATGAGCAAACCATATCAGAGGTTGAAGCTATTCTGAAACCTGTCAAGAATCAGACTTGGCCTAGTGGAATCCAGCAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0010349 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016645 GO:0016646 GO:0018130 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045290 GO:0046364 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0070484 GO:0070485 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

326

Amino Acids

35.46

Weight (kDa)

5.43

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	19 - 295	3.7e-50	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33670
fragaria_vesca	FvH4_2g02330 FvH4_2g02330
malus_domestica	MD05G1113100.v1.1 MD10G1115600.v1.1
prunus_persica	Prupe.8G157600_v2.0.a1 Prupe.8G157600_v2.0.a1
pyrus_communis	pycom05g10830 pycom10g10010
rosa_chinensis	RchiOBHm_Chr6g0246091
rosa_laevigata	RLG00000015271
rosa_multiflora	Rmu_sc0004042.1_g000009 Rmu_sc0009451.1_g000013
rosa_roxburghii	Rroxscaffold_7G00214970
rosa_rugosa	Rorug05G0519000
rosa_samantha	Rh6AG033300 Rh6BG028800 Rh6CG029000 Rh6DG028100
rosa_wichuraiana	Rw6G002680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	532
AccB1I	GGYRCC	1 cut(s)	532
AccBSI	CCGCTC	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	722
AccII	CGCG	1 cut(s)	129
AciI	CCGC	3 cut(s)	191, 285, 441
AclWI	GGATC	1 cut(s)	466
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	2 cut(s)	318, 638
AfaI	GTAC	2 cut(s)	205, 534
AgsI	TTSAA	5 cut(s)	14, 401, 774, 885, 923
AjnI	CCWGG	1 cut(s)	538
Alw26I	GTCTC	2 cut(s)	103, 425
AlwI	GGATC	1 cut(s)	466
AlwNI	CAGNNNCTG	1 cut(s)	454
AoxI	GGCC	3 cut(s)	3, 91, 956
ApeKI	GCWGC	6 cut(s)	51, 361, 734, 737, 866, 869
ApoI	RAATTY	1 cut(s)	401
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AseI	ATTAAT	1 cut(s)	582
Asp700I	GAANNNNTTC	2 cut(s)	135, 927
Asp718I	GGTACC	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	92, 683
AsuC2I	CCSGG	2 cut(s)	143, 530
AvaII	GGWCC	1 cut(s)	683
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	79
BbvI	GCAGC	6 cut(s)	38, 373, 721, 724, 853, 856
BccI	CCATC	1 cut(s)	122
BcgI	CGANNNNNNTGC	4 cut(s)	70, 104, 296, 330
BciT130I	CCWGG	1 cut(s)	540
BcnI	CCSGG	2 cut(s)	143, 530
BcoDI	GTCTC	2 cut(s)	103, 425
BfaI	CTAG	3 cut(s)	245, 365, 960
BfmI	CTRYAG	1 cut(s)	446
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	6 cut(s)	52, 362, 735, 738, 867, 870
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	6 cut(s)	53, 363, 736, 739, 868, 871
Bme1390I	CCNGG	3 cut(s)	143, 530, 540
Bme18I	GGWCC	1 cut(s)	683
BmgT120I	GGNCC	2 cut(s)	92, 683
BmiI	GGNNCC	2 cut(s)	121, 534
BmrFI	CCNGG	3 cut(s)	143, 530, 540
BmrI	ACTGGG	2 cut(s)	35, 89
BmsI	GCATC	3 cut(s)	156, 706, 713
BmuI	ACTGGG	2 cut(s)	35, 89
BpiI	GAAGAC	1 cut(s)	79
BpmI	CTGGAG	2 cut(s)	617, 672
Bpu1102I	GCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	2 cut(s)	26, 701
BpuMI	CCSGG	2 cut(s)	143, 530
BsaAI	YACGTR	1 cut(s)	373
BsaJI	CCNNGG	3 cut(s)	6, 142, 254
Bse1I	ACTGG	3 cut(s)	30, 95, 600
Bse3DI	GCAATG	2 cut(s)	392, 666
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	3 cut(s)	6, 142, 254
BseGI	GGATG	2 cut(s)	184, 697
BseMI	GCAATG	2 cut(s)	392, 666
BseMII	CTCAG	2 cut(s)	61, 666
BseNI	ACTGG	3 cut(s)	30, 95, 600
BseXI	GCAGC	6 cut(s)	38, 373, 721, 724, 853, 856
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	3 cut(s)	5, 93, 958
BshNI	GGYRCC	1 cut(s)	532
BsiSI	CCGG	2 cut(s)	142, 529
BslFI	GGGAC	2 cut(s)	228, 507
BsmAI	GTCTC	2 cut(s)	103, 425
BsmFI	GGGAC	2 cut(s)	228, 507
BsnI	GGCC	3 cut(s)	5, 93, 958
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	415, 471
Bsp1720I	GCTNAGC	1 cut(s)	47
Bsp68I	TCGCGA	1 cut(s)	129
BspACI	CCGC	3 cut(s)	191, 285, 441
BspANI	GGCC	3 cut(s)	5, 93, 958
BspCNI	CTCAG	2 cut(s)	60, 667
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	121, 534
BspPI	GGATC	1 cut(s)	466
BspQI	GCTCTTC	1 cut(s)	614
BspT107I	GGYRCC	1 cut(s)	532
BsrBI	CCGCTC	1 cut(s)	443
BsrDI	GCAATG	2 cut(s)	392, 666
BsrI	ACTGG	3 cut(s)	30, 95, 600
BssECI	CCNNGG	3 cut(s)	6, 142, 254
BssMI	GATC	2 cut(s)	415, 471
BssT1I	CCWWGG	2 cut(s)	6, 254
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	3 cut(s)	547, 578, 889
Bst6I	CTCTTC	1 cut(s)	614
BstBAI	YACGTR	1 cut(s)	373
BstDEI	CTNAG	3 cut(s)	47, 330, 675
BstF5I	GGATG	2 cut(s)	184, 697
BstFNI	CGCG	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	418, 474
BstMAI	GTCTC	2 cut(s)	103, 425
BstMBI	GATC	2 cut(s)	415, 471
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 126
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	3 cut(s)	141, 528, 538
BstSFI	CTRYAG	1 cut(s)	446
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	6 cut(s)	38, 373, 721, 724, 853, 856
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	5, 93, 958
BtsCI	GGATG	2 cut(s)	184, 697
BtsIMutI	CAGTG	5 cut(s)	319, 552, 593, 672, 825
BtuMI	TCGCGA	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	454
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	92, 683
Csp6I	GTAC	2 cut(s)	204, 533
CviAII	CATG	2 cut(s)	392, 832
CviQI	GTAC	2 cut(s)	204, 533
DdeI	CTNAG	3 cut(s)	47, 330, 675
DpnI	GATC	2 cut(s)	417, 473
DpnII	GATC	2 cut(s)	415, 471
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	614
EarI	CTCTTC	1 cut(s)	614
Eco130I	CCWWGG	2 cut(s)	6, 254
Eco24I	GRGCYC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	811
Eco47I	GGWCC	1 cut(s)	683
Eco57I	CTGAAG	2 cut(s)	318, 638
EcoRII	CCWGG	1 cut(s)	538
EcoRV	GATATC	1 cut(s)	811
EcoT14I	CCWWGG	2 cut(s)	6, 254
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	2 cut(s)	6, 254
FaeI	CATG	2 cut(s)	395, 835
FaqI	GGGAC	2 cut(s)	228, 507
FatI	CATG	2 cut(s)	391, 831
FauI	CCCGC	1 cut(s)	448
FauNDI	CATATG	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	722
Fnu4HI	GCNGC	6 cut(s)	52, 362, 735, 738, 867, 870
FokI	GGATG	2 cut(s)	171, 684
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	6 cut(s)	52, 362, 735, 738, 867, 870
FspBI	CTAG	3 cut(s)	245, 365, 960
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	6 cut(s)	52, 362, 735, 738, 867, 870
GsuI	CTGGAG	2 cut(s)	617, 672
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	5, 93, 958
HapII	CCGG	2 cut(s)	142, 529
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	395, 835
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	4 cut(s)	409, 587, 946, 966
HpaII	CCGG	2 cut(s)	142, 529
Hpy166II	GTNNAC	2 cut(s)	550, 723
Hpy188I	TCNGA	5 cut(s)	103, 420, 916, 933, 951
Hpy188III	TCNNGA	7 cut(s)	20, 128, 413, 524, 689, 710, 943
Hpy8I	GTNNAC	2 cut(s)	550, 723
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	3 cut(s)	547, 578, 889
HpyCH4IV	ACGT	3 cut(s)	84, 372, 552
HpyCH4V	TGCA	4 cut(s)	361, 385, 659, 787
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 126
HpyF3I	CTNAG	3 cut(s)	47, 330, 675
HpySE526I	ACGT	3 cut(s)	84, 372, 552
Hsp92II	CATG	2 cut(s)	395, 835
HspAI	GCGC	1 cut(s)	66
KpnI	GGTACC	1 cut(s)	536
Kzo9I	GATC	2 cut(s)	415, 471
LguI	GCTCTTC	1 cut(s)	614
LmnI	GCTCC	2 cut(s)	125, 877
Lsp1109I	GCAGC	6 cut(s)	38, 373, 721, 724, 853, 856
LweI	GCATC	3 cut(s)	156, 706, 713
MaeI	CTAG	3 cut(s)	245, 365, 960
MaeII	ACGT	3 cut(s)	84, 372, 552
MaeIII	GTNAC	2 cut(s)	29, 325
MalI	GATC	2 cut(s)	417, 473
MbiI	CCGCTC	1 cut(s)	443
MboI	GATC	2 cut(s)	415, 471
MboII	GAAGA	6 cut(s)	79, 119, 148, 481, 631, 775
MflI	RGATCY	1 cut(s)	471
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	401, 435, 639
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	9 cut(s)	84, 175, 198, 205, 592, 696, 752, 847, 910
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	135, 927
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	582, 843
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	2 cut(s)	142, 529
MspR9I	CCNGG	3 cut(s)	143, 530, 540
MvaI	CCWGG	1 cut(s)	540
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	57, 126
NciI	CCSGG	2 cut(s)	143, 530
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	2 cut(s)	415, 471
NlaIII	CATG	2 cut(s)	395, 835
NlaIV	GGNNCC	2 cut(s)	121, 534
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	325
NruI	TCGCGA	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	614
PdmI	GAANNNNTTC	2 cut(s)	135, 927
PfeI	GAWTC	4 cut(s)	409, 587, 946, 966
PkrI	GCNGC	6 cut(s)	53, 363, 736, 739, 868, 871
Ppu21I	YACGTR	1 cut(s)	373
PshBI	ATTAAT	1 cut(s)	582
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	2 cut(s)	121, 534
PspPI	GGNCC	2 cut(s)	92, 683
PstNI	CAGNNNCTG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	471
PvuII	CAGCTG	1 cut(s)	51
RruI	TCGCGA	1 cut(s)	129
RsaI	GTAC	2 cut(s)	205, 534
RsaNI	GTAC	2 cut(s)	204, 533
SapI	GCTCTTC	1 cut(s)	614
SaqAI	TTAA	2 cut(s)	582, 843
SatI	GCNGC	6 cut(s)	52, 362, 735, 738, 867, 870
Sau3AI	GATC	2 cut(s)	415, 471
Sau96I	GGNCC	2 cut(s)	92, 683
ScrFI	CCNGG	3 cut(s)	143, 530, 540
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	3 cut(s)	156, 706, 713
SfcI	CTRYAG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	683
SmlI	CTYRAG	2 cut(s)	41, 716
SmoI	CTYRAG	2 cut(s)	41, 716
Sse9I	AATT	3 cut(s)	401, 435, 639
SsiI	CCGC	3 cut(s)	191, 285, 441
SspI	AATATT	1 cut(s)	769
SspMI	CTAG	3 cut(s)	245, 365, 960
StyD4I	CCNGG	3 cut(s)	141, 528, 538
StyI	CCWWGG	2 cut(s)	6, 254
TaaI	ACNGT	3 cut(s)	547, 578, 889
TaiI	ACGT	3 cut(s)	87, 375, 555
TaqI	TCGA	4 cut(s)	19, 159, 306, 414
TasI	AATT	3 cut(s)	401, 435, 639
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	4 cut(s)	409, 587, 946, 966
Tru1I	TTAA	2 cut(s)	582, 843
Tru9I	TTAA	2 cut(s)	582, 843
TscAI	CASTG	5 cut(s)	319, 552, 600, 679, 825
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	6 cut(s)	51, 361, 734, 737, 866, 869
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	469, 848
TspGWI	ACGGA	3 cut(s)	112, 159, 464
TspRI	CASTG	5 cut(s)	319, 552, 600, 679, 825
VpaK11BI	GGWCC	1 cut(s)	683
VspI	ATTAAT	1 cut(s)	582
XapI	RAATTY	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	722
XmnI	GAANNNNTTC	2 cut(s)	135, 927
XspI	CTAG	3 cut(s)	245, 365, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.