Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011375

Physical Location & Seq

Genomic Coordinates Reverse (-)

70307418 .. 70310476

Gene Structure 3059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0519000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCTTCGCTTTGTCTCAACTCGTTGCCTCTGCCTCCACCTTCTCAGCCTCGCAAGCTCTTAGAGACTCCTCCTTCTTTTTCTTCTTCAACTCCTTCTTCACTGAACAGTTATGGCAAAACAGAGGCCTCCAAGCCCATAGTCGTCAGTGGAAACCCACCCACTTTTGTTTCTGCTCCCGGTCGCCGAATTGTCGCCGTTGGGGATCTGCATGGAGACCTTGATCAAACAAGATGTGCACTTGAGATGGCTGGTGTGTTGAGTTCTGATGGTGAAGACTTGTGGACAGGCGGGGAAACGGTATTAGTTCAGCTTGGAGATATACTTGATCGAGGTGAGGATGAAATTGCCATTTTGTCATTGCTGCGATCCTTGGATATCCAGGCAAAAGCTGAAGGTGGAGCAGTTTTTCAGGTCAATGGAAATCATGAAAGCATGAATGTGGAGGGGGATTTTCGATTTGTGGACGCTGGAGGATTTGATGAGTGTATTGATTTCTTGGAATACTTGGATGACTGTAGAGATGACTGGGAAGAAGCTTTTGTTGACTGGATTGGTGTCTCTCAAAAGTTGAAAGAAGATAGGAAAATGCCCCAAAGTTATTGGGATCCATGGAATCTAGTGAGGAGGCAAAAGGGTGTGATTGCCAGATCAATCCTTCTAAGACCAGGCGGTCCATTGGCGTGTGAGTTAGCGCGACATGCTGTTGTTCTTAAGGTCAATGACTGGCTCTTCTGTCATGGTGGTCTTGTTCCTCACCACGTTGCATATGGCATAGAGAGAATGAATAAGGAAGTATCTCATTGGATGAGAGGACTCAGTGAGAGTGAGGACGATCCTGACATCCCTTTCATAGCCACAAGGGGATATGACAGTGTAGTTTGGAATCGTTTGTACTCGAGAGATAACTCAGATTTCGATGACTACCAGAGTAACCAGCAGATACACTCTATTCTTGAAAAGACACTACAAGCAGCTGGTGCTAAGGCAATGGTGGTAGGGCATACTCCTCAAACTGTAGGAGTAAACTGTAAATACAATTGTAGCATATGGCGGATTGACGTTGGGATGTCAAGTGGAGTTCTTAATTCAAGACCAGAGGTTCTAGAAATAAGAGGCGATAAAGCAAGAGTTATCAGAAGTGAGAGGGATAGCTTCAGTGAACTCAATGTTGTTGATTATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0010349 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016645 GO:0016646 GO:0018130 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045290 GO:0046364 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0070484 GO:0070485 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

395

Amino Acids

43.82

Weight (kDa)

4.9

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	63 - 337	1e-07	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33670
fragaria_vesca	FvH4_2g02330 FvH4_2g02330
malus_domestica	MD05G1113100.v1.1 MD10G1115600.v1.1
prunus_persica	Prupe.8G157600_v2.0.a1 Prupe.8G157600_v2.0.a1
pyrus_communis	pycom05g10830 pycom10g10010
rosa_chinensis	RchiOBHm_Chr6g0246091
rosa_laevigata	RLG00000015271
rosa_multiflora	Rmu_sc0004042.1_g000009 Rmu_sc0009451.1_g000013
rosa_roxburghii	Rroxscaffold_7G00214970
rosa_rugosa	Rorug05G0519000
rosa_samantha	Rh6AG033300 Rh6BG028800 Rh6CG029000 Rh6DG028100
rosa_wichuraiana	Rw6G002680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	672
AccII	CGCG	1 cut(s)	697
AciI	CCGC	3 cut(s)	291, 672, 1054
AclWI	GGATC	5 cut(s)	213, 363, 602, 615, 830
AcuI	CTGAAG	2 cut(s)	414, 1141
AfaI	GTAC	1 cut(s)	896
AflII	CTTAAG	1 cut(s)	713
AgsI	TTSAA	4 cut(s)	90, 574, 959, 1092
AjnI	CCWGG	2 cut(s)	381, 667
AluBI	AGCT	6 cut(s)	58, 313, 392, 539, 977, 1155
AluI	AGCT	6 cut(s)	58, 313, 392, 539, 977, 1155
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	4 cut(s)	20, 59, 210, 565
Alw44I	GTGCAC	1 cut(s)	237
AlwI	GGATC	5 cut(s)	213, 363, 602, 615, 830
Ama87I	CYCGRG	1 cut(s)	898
AoxI	GGCC	1 cut(s)	126
ApaLI	GTGCAC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	364, 974
AspLEI	GCGC	1 cut(s)	697
AspS9I	GGNCC	1 cut(s)	674
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	3 cut(s)	284, 347, 749
AvaI	CYCGRG	1 cut(s)	898
AvaII	GGWCC	1 cut(s)	674
BaeGI	GKGCMC	1 cut(s)	241
BamHI	GGATCC	1 cut(s)	607
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	351, 986
BccI	CCATC	2 cut(s)	241, 263
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	2 cut(s)	383, 669
BclI	TGATCA	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	4 cut(s)	20, 59, 210, 565
BfaI	CTAG	2 cut(s)	620, 1106
BfmI	CTRYAG	2 cut(s)	517, 1017
BfrI	CTTAAG	1 cut(s)	713
BisI	GCNGC	2 cut(s)	365, 975
BlsI	GCNGC	2 cut(s)	366, 976
Bme1390I	CCNGG	3 cut(s)	180, 383, 669
Bme18I	GGWCC	1 cut(s)	674
BmeT110I	CYCGRG	1 cut(s)	898
BmgT120I	GGNCC	1 cut(s)	674
BmiI	GGNNCC	1 cut(s)	609
BmrFI	CCNGG	3 cut(s)	180, 383, 669
BmrI	ACTGGG	1 cut(s)	538
BmuI	ACTGGG	1 cut(s)	538
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	984
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	372, 611
Bse1I	ACTGG	3 cut(s)	533, 554, 731
Bse3DI	GCAATG	2 cut(s)	359, 996
BseBI	CCWGG	2 cut(s)	383, 669
BseDI	CCNNGG	2 cut(s)	372, 611
BseGI	GGATG	5 cut(s)	346, 517, 813, 843, 1074
BseMI	GCAATG	2 cut(s)	359, 996
BseMII	CTCAG	3 cut(s)	59, 832, 924
BseNI	ACTGG	3 cut(s)	533, 554, 731
BseRI	GAGGAG	3 cut(s)	60, 640, 999
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	2 cut(s)	351, 986
Bsh1236I	CGCG	1 cut(s)	697
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	898
BsiSI	CCGG	1 cut(s)	180
BsmAI	GTCTC	4 cut(s)	20, 59, 210, 565
BsnI	GGCC	1 cut(s)	128
Bso31I	GGTCTC	1 cut(s)	210
BsoBI	CYCGRG	1 cut(s)	898
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	7 cut(s)	205, 223, 328, 368, 607, 650, 835
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	3 cut(s)	291, 672, 1054
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	3 cut(s)	58, 831, 923
BspFNI	CGCG	1 cut(s)	697
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	609
BspPI	GGATC	5 cut(s)	213, 363, 602, 615, 830
BspQI	GCTCTTC	1 cut(s)	737
BspTI	CTTAAG	1 cut(s)	713
BspTNI	GGTCTC	1 cut(s)	210
BsrDI	GCAATG	2 cut(s)	359, 996
BsrI	ACTGG	3 cut(s)	533, 554, 731
BssECI	CCNNGG	2 cut(s)	372, 611
BssMI	GATC	7 cut(s)	205, 223, 328, 368, 607, 650, 835
BssT1I	CCWWGG	2 cut(s)	372, 611
Bst2UI	CCWGG	2 cut(s)	383, 669
Bst4CI	ACNGT	6 cut(s)	110, 301, 518, 875, 1018, 1031
Bst6I	CTCTTC	1 cut(s)	737
BstAFI	CTTAAG	1 cut(s)	713
BstAPI	GCANNNNNTGC	1 cut(s)	980
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	6 cut(s)	45, 61, 662, 818, 910, 984
BstDSI	CCRYGG	1 cut(s)	611
BstF5I	GGATG	5 cut(s)	346, 517, 813, 843, 1074
BstFNI	CGCG	1 cut(s)	697
BstHHI	GCGC	1 cut(s)	697
BstKTI	GATC	7 cut(s)	208, 226, 331, 371, 610, 653, 838
BstMAI	GTCTC	4 cut(s)	20, 59, 210, 565
BstMBI	GATC	7 cut(s)	205, 223, 328, 368, 607, 650, 835
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 701, 980
BstNI	CCWGG	2 cut(s)	383, 669
BstNSI	RCATGY	1 cut(s)	704
BstSCI	CCNGG	3 cut(s)	178, 381, 667
BstSFI	CTRYAG	2 cut(s)	517, 1017
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	1 cut(s)	697
BstV1I	GCAGC	2 cut(s)	351, 986
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	2 cut(s)	205, 607
BstYI	RGATCY	2 cut(s)	205, 607
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	611
BtsCI	GGATG	5 cut(s)	346, 517, 813, 843, 1074
BtsIMutI	CAGTG	5 cut(s)	101, 154, 826, 880, 1165
Cac8I	GCNNGC	1 cut(s)	56
CciI	TCATGA	1 cut(s)	427
CfoI	GCGC	1 cut(s)	697
Cfr13I	GGNCC	1 cut(s)	674
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	895
CviAII	CATG	6 cut(s)	212, 428, 436, 612, 701, 740
CviQI	GTAC	1 cut(s)	895
DdeI	CTNAG	6 cut(s)	45, 61, 662, 818, 910, 984
DpnI	GATC	7 cut(s)	207, 225, 330, 370, 609, 652, 837
DpnII	GATC	7 cut(s)	205, 223, 328, 368, 607, 650, 835
DrdI	GACNNNNNNGTC	1 cut(s)	672
DseDI	GACNNNNNNGTC	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	737
EarI	CTCTTC	1 cut(s)	737
EciI	GGCGGA	1 cut(s)	1069
Eco130I	CCWWGG	2 cut(s)	372, 611
Eco147I	AGGCCT	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	674
Eco57I	CTGAAG	2 cut(s)	414, 1141
Eco88I	CYCGRG	1 cut(s)	898
EcoRII	CCWGG	2 cut(s)	381, 667
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	2 cut(s)	372, 611
ErhI	CCWWGG	2 cut(s)	372, 611
FaeI	CATG	6 cut(s)	215, 431, 439, 615, 704, 743
FatI	CATG	6 cut(s)	211, 427, 435, 611, 700, 739
FauI	CCCGC	1 cut(s)	284
FauNDI	CATATG	2 cut(s)	769, 1049
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	365, 975
FokI	GGATG	5 cut(s)	353, 524, 820, 830, 1081
Fsp4HI	GCNGC	2 cut(s)	365, 975
FspBI	CTAG	2 cut(s)	620, 1106
GlaI	GCGC	1 cut(s)	696
GluI	GCNGC	2 cut(s)	365, 975
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	1 cut(s)	476
HhaI	GCGC	1 cut(s)	697
Hin1II	CATG	6 cut(s)	215, 431, 439, 615, 704, 743
Hin6I	GCGC	1 cut(s)	695
HinP1I	GCGC	1 cut(s)	695
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	537
HinfI	GANTC	4 cut(s)	67, 616, 816, 886
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	3 cut(s)	284, 347, 749
Hpy166II	GTNNAC	6 cut(s)	239, 285, 466, 547, 1027, 1163
Hpy188I	TCNGA	3 cut(s)	268, 913, 1139
Hpy188III	TCNNGA	6 cut(s)	428, 839, 900, 956, 1092, 1106
Hpy8I	GTNNAC	6 cut(s)	239, 285, 466, 547, 1027, 1163
HpyAV	CCTTC	5 cut(s)	51, 84, 105, 389, 668
HpyCH4III	ACNGT	6 cut(s)	110, 301, 518, 875, 1018, 1031
HpyCH4IV	ACGT	2 cut(s)	762, 1062
HpyCH4V	TGCA	3 cut(s)	211, 239, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 701, 980
HpyF3I	CTNAG	6 cut(s)	45, 61, 662, 818, 910, 984
HpySE526I	ACGT	2 cut(s)	762, 1062
Hsp92II	CATG	6 cut(s)	215, 431, 439, 615, 704, 743
HspAI	GCGC	1 cut(s)	695
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	7 cut(s)	205, 223, 328, 368, 607, 650, 835
LguI	GCTCTTC	1 cut(s)	737
LmnI	GCTCC	2 cut(s)	181, 401
Lsp1109I	GCAGC	2 cut(s)	351, 986
MaeI	CTAG	2 cut(s)	620, 1106
MaeII	ACGT	2 cut(s)	762, 1062
MaeIII	GTNAC	1 cut(s)	932
MalI	GATC	7 cut(s)	207, 225, 330, 370, 609, 652, 837
MboI	GATC	7 cut(s)	205, 223, 328, 368, 607, 650, 835
MboII	GAAGA	7 cut(s)	75, 78, 90, 287, 545, 590, 724
MfeI	CAATTG	1 cut(s)	1039
MflI	RGATCY	2 cut(s)	205, 607
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	4 cut(s)	189, 345, 1039, 1087
MlyI	GAGTC	2 cut(s)	61, 810
MseI	TTAA	2 cut(s)	714, 1086
MslI	CAYNNNNRTG	2 cut(s)	440, 682
MspA1I	CMGCKG	1 cut(s)	977
MspCI	CTTAAG	1 cut(s)	713
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	3 cut(s)	180, 383, 669
MunI	CAATTG	1 cut(s)	1039
MvaI	CCWGG	2 cut(s)	383, 669
MvnI	CGCG	1 cut(s)	697
MwoI	GCNNNNNNNGC	3 cut(s)	55, 701, 980
NciI	CCSGG	1 cut(s)	180
NcoI	CCATGG	1 cut(s)	611
NdeI	CATATG	2 cut(s)	769, 1049
NdeII	GATC	7 cut(s)	205, 223, 328, 368, 607, 650, 835
NlaIII	CATG	6 cut(s)	215, 431, 439, 615, 704, 743
NlaIV	GGNNCC	1 cut(s)	609
NspI	RCATGY	1 cut(s)	704
PaeR7I	CTCGAG	1 cut(s)	898
PagI	TCATGA	1 cut(s)	427
PceI	AGGCCT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	737
PfeI	GAWTC	2 cut(s)	616, 886
PkrI	GCNGC	2 cut(s)	366, 976
PleI	GAGTC	2 cut(s)	61, 810
PpsI	GAGTC	2 cut(s)	61, 810
Psp6I	CCWGG	2 cut(s)	381, 667
PspGI	CCWGG	2 cut(s)	381, 667
PspN4I	GGNNCC	1 cut(s)	609
PspPI	GGNCC	1 cut(s)	674
PsuI	RGATCY	2 cut(s)	205, 607
PvuII	CAGCTG	1 cut(s)	977
RsaI	GTAC	1 cut(s)	896
RsaNI	GTAC	1 cut(s)	895
RseI	CAYNNNNRTG	2 cut(s)	440, 682
SapI	GCTCTTC	1 cut(s)	737
SaqAI	TTAA	2 cut(s)	714, 1086
SatI	GCNGC	2 cut(s)	365, 975
Sau3AI	GATC	7 cut(s)	205, 223, 328, 368, 607, 650, 835
Sau96I	GGNCC	1 cut(s)	674
SchI	GAGTC	2 cut(s)	61, 810
ScrFI	CCNGG	3 cut(s)	180, 383, 669
SduI	GDGCHC	1 cut(s)	241
SfcI	CTRYAG	2 cut(s)	517, 1017
Sfr274I	CTCGAG	1 cut(s)	898
SinI	GGWCC	1 cut(s)	674
SlaI	CTCGAG	1 cut(s)	898
SmiMI	CAYNNNNRTG	2 cut(s)	440, 682
SmlI	CTYRAG	3 cut(s)	242, 713, 898
SmoI	CTYRAG	3 cut(s)	242, 713, 898
Sse9I	AATT	4 cut(s)	189, 345, 1039, 1087
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	3 cut(s)	291, 672, 1054
SspMI	CTAG	2 cut(s)	620, 1106
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	3 cut(s)	178, 381, 667
StyI	CCWWGG	2 cut(s)	372, 611
TaaI	ACNGT	6 cut(s)	110, 301, 518, 875, 1018, 1031
TaiI	ACGT	2 cut(s)	765, 1065
TaqI	TCGA	4 cut(s)	331, 457, 899, 918
TasI	AATT	4 cut(s)	189, 345, 1039, 1087
TatI	WGTACW	1 cut(s)	894
TfiI	GAWTC	2 cut(s)	616, 886
Tru1I	TTAA	2 cut(s)	714, 1086
Tru9I	TTAA	2 cut(s)	714, 1086
TscAI	CASTG	5 cut(s)	108, 154, 826, 880, 1165
TseI	GCWGC	2 cut(s)	364, 974
TspDTI	ATGAA	5 cut(s)	357, 444, 452, 800, 841
TspRI	CASTG	5 cut(s)	108, 154, 826, 880, 1165
Vha464I	CTTAAG	1 cut(s)	713
VneI	GTGCAC	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	674
XbaI	TCTAGA	1 cut(s)	1105
XceI	RCATGY	1 cut(s)	704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	767
XhoI	CTCGAG	1 cut(s)	898
XspI	CTAG	2 cut(s)	620, 1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.