Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011375

Physical Location & Seq

Genomic Coordinates Forward (+)

19172365 .. 19177859

Gene Structure 5495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1115600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTTCGCCACCGCTGCCAAAGGTTGAACTCCGAGAGCTCGGCAACACAGGCCTCAAGCTCAGCTGCGTCGGCTTCGGCGCCTCACCTCTCGGCAACGTCTTCGGTCCCGTCTCGGATGACGAAGCCATCGGCTCCGTTCGCGAAGCCTTCCGCCGAGGCATCAATTTCTTCGACACCTCTCCGTATTATGGTGGGACTTTGTCAAAGAAGGTGCTTGGTAAATCGCTAAAAGCTCTAAGTGTTCCTAGAAGCGAGTACATCGTGGCAACCAAGTGTGGACGCTATGCTGACGGTTTTGATTTTAGTGCGGATAGAGTGACTAAGAGCATTGATGAGAGCTTGGAGAGGTTGCTGCTAGATTATGTCGATATTCTGCAATGCCATGATATAGAATTTGGGTCTCTAGACCAGACAATCCCTGCCCTAAAGACACTGAAAGAAGCCGGGAAGATTCGTTTCATTGGTATCACAGGACTTCCATTGGGAATTTTCACATATGTTCTTGATCGCATACCAGCTGGCACGGTGGACGTCATCCTGTCATATTGCCACTTCGGTATTAATGATTCAACATTGGAGGATTTACTACCATACCTAAAGAGCAAAGGTGTTGGAATCATTACTGGTTCTCCGCTTGCAATGGGTCTGCTTACTGAGCTGCTTGCCGAGCTGCTGCTGTCTATTGTAAAGAGAGGGAAGAATATTTCAAAGTTAGCTCTGCAATACAGTTTGTCCAATAAAGATATCTCATCAGTGCTGGTCGGCATGAACTCTGTTATTCAGGTTGAGGAAAATGTCGCTGCTGCTGTGGAGCTCGCGACCATTGGCAAGGATGAGAAAACTCTAGCAGAGGTTGAAGCTATTCTGAAACCGGTGAAGAATCAGACATGGCGTAGCGGAATCCAGCAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0010349 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016645 GO:0016646 GO:0018130 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045290 GO:0046364 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0070484 GO:0070485 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

306

Amino Acids

32.91

Weight (kDa)

5.86

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	24 - 270	7.6e-46	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33670
fragaria_vesca	FvH4_2g02330 FvH4_2g02330
malus_domestica	MD05G1113100.v1.1 MD10G1115600.v1.1
prunus_persica	Prupe.8G157600_v2.0.a1 Prupe.8G157600_v2.0.a1
pyrus_communis	pycom05g10830 pycom10g10010
rosa_chinensis	RchiOBHm_Chr6g0246091
rosa_laevigata	RLG00000015271
rosa_multiflora	Rmu_sc0004042.1_g000009 Rmu_sc0009451.1_g000013
rosa_roxburghii	Rroxscaffold_7G00214970
rosa_rugosa	Rorug05G0519000
rosa_samantha	Rh6AG033300 Rh6BG028800 Rh6CG029000 Rh6DG028100
rosa_wichuraiana	Rw6G002680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	80
AccII	CGCG	2 cut(s)	144, 821
AciI	CCGC	5 cut(s)	14, 154, 311, 635, 900
AcsI	RAATTY	2 cut(s)	395, 489
AcyI	GRCGYC	2 cut(s)	81, 534
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgeI	ACCGGT	1 cut(s)	874
AgsI	TTSAA	4 cut(s)	29, 573, 711, 860
Alw21I	GWGCWC	2 cut(s)	42, 819
Alw26I	GTCTC	2 cut(s)	118, 408
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	8 cut(s)	16, 66, 355, 661, 673, 676, 803, 806
ApoI	RAATTY	2 cut(s)	395, 489
AseI	ATTAAT	1 cut(s)	564
AsiGI	ACCGGT	1 cut(s)	874
Asp700I	GAANNNNTTC	1 cut(s)	864
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	448
AsuHPI	GGTGA	2 cut(s)	78, 889
AvaII	GGWCC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	80
BanII	GRGCYC	2 cut(s)	42, 819
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	2 cut(s)	42, 819
BbvI	GCAGC	8 cut(s)	3, 53, 342, 648, 660, 663, 790, 793
BccI	CCATC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BcnI	CCSGG	1 cut(s)	448
BcoDI	GTCTC	2 cut(s)	118, 408
BfaI	CTAG	4 cut(s)	249, 359, 407, 848
BfoI	RGCGCY	1 cut(s)	84
BisI	GCNGC	8 cut(s)	17, 67, 356, 662, 674, 677, 804, 807
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	8 cut(s)	18, 68, 357, 663, 675, 678, 805, 808
Bme1390I	CCNGG	1 cut(s)	448
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	3 cut(s)	82, 109, 136
BmrFI	CCNGG	1 cut(s)	448
BmsI	GCATC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	94
Bpu1102I	GCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	448
BsaHI	GRCGYC	2 cut(s)	81, 534
BsaI	GGTCTC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	157
BsaWI	WCCGGW	1 cut(s)	874
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse118I	RCCGGY	1 cut(s)	874
Bse1I	ACTGG	1 cut(s)	631
Bse3DI	GCAATG	2 cut(s)	386, 648
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	3 cut(s)	124, 537, 841
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMI	GCAATG	2 cut(s)	386, 648
BseMII	CTCAG	2 cut(s)	76, 648
BseNI	ACTGG	1 cut(s)	631
BseXI	GCAGC	8 cut(s)	3, 53, 342, 648, 660, 663, 790, 793
Bsh1236I	CGCG	2 cut(s)	144, 821
BshFI	GGCC	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	80
BshTI	ACCGGT	1 cut(s)	874
BsiHKAI	GWGCWC	2 cut(s)	42, 819
BsiSI	CCGG	2 cut(s)	447, 875
BslFI	GGGAC	2 cut(s)	93, 211
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	2 cut(s)	118, 408
BsmBI	CGTCTC	1 cut(s)	118
BsmFI	GGGAC	2 cut(s)	93, 211
BsnI	GGCC	1 cut(s)	54
Bso31I	GGTCTC	1 cut(s)	408
Bsp1286I	GDGCHC	2 cut(s)	42, 819
Bsp143I	GATC	1 cut(s)	508
Bsp1720I	GCTNAGC	1 cut(s)	62
Bsp68I	TCGCGA	2 cut(s)	144, 821
BspACI	CCGC	5 cut(s)	14, 154, 311, 635, 900
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	2 cut(s)	75, 649
BspFNI	CGCG	2 cut(s)	144, 821
BspLI	GGNNCC	3 cut(s)	82, 109, 136
BspT107I	GGYRCC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	408
BsrDI	GCAATG	2 cut(s)	386, 648
BsrFI	RCCGGY	1 cut(s)	874
BsrI	ACTGG	1 cut(s)	631
BssAI	RCCGGY	1 cut(s)	874
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	1 cut(s)	508
BssNI	GRCGYC	2 cut(s)	81, 534
Bst4CI	ACNGT	3 cut(s)	296, 529, 731
BstACI	GRCGYC	2 cut(s)	81, 534
BstC8I	GCNNGC	4 cut(s)	523, 639, 666, 819
BstDEI	CTNAG	4 cut(s)	62, 239, 324, 657
BstF5I	GGATG	3 cut(s)	124, 537, 841
BstFNI	CGCG	2 cut(s)	144, 821
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	1 cut(s)	511
BstMAI	GTCTC	2 cut(s)	118, 408
BstMBI	GATC	1 cut(s)	508
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 51, 72, 141, 658, 670
BstSCI	CCNGG	1 cut(s)	446
BstUI	CGCG	2 cut(s)	144, 821
BstV1I	GCAGC	8 cut(s)	3, 53, 342, 648, 660, 663, 790, 793
BstV2I	GAAGAC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	3 cut(s)	124, 537, 841
BtsIMutI	CAGTG	2 cut(s)	434, 762
BtuMI	TCGCGA	2 cut(s)	144, 821
Cac8I	GCNNGC	4 cut(s)	523, 639, 666, 819
CfoI	GCGC	1 cut(s)	83
Cfr10I	RCCGGY	1 cut(s)	874
Cfr13I	GGNCC	1 cut(s)	107
CseI	GACGC	2 cut(s)	58, 291
Csp6I	GTAC	1 cut(s)	259
CspAI	ACCGGT	1 cut(s)	874
CviAII	CATG	3 cut(s)	386, 769, 891
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	4 cut(s)	62, 239, 324, 657
DinI	GGCGCC	1 cut(s)	82
DpnI	GATC	1 cut(s)	510
DpnII	GATC	1 cut(s)	508
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	2 cut(s)	40, 817
Eco147I	AGGCCT	1 cut(s)	54
Eco24I	GRGCYC	2 cut(s)	42, 819
Eco31I	GGTCTC	1 cut(s)	408
Eco32I	GATATC	1 cut(s)	748
Eco47I	GGWCC	1 cut(s)	107
Eco53kI	GAGCTC	2 cut(s)	40, 817
EcoICRI	GAGCTC	2 cut(s)	40, 817
EcoRV	GATATC	1 cut(s)	748
EcoT38I	GRGCYC	2 cut(s)	42, 819
EgeI	GGCGCC	1 cut(s)	82
EheI	GGCGCC	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	3 cut(s)	389, 772, 894
FaqI	GGGAC	2 cut(s)	93, 211
FatI	CATG	3 cut(s)	385, 768, 890
FauNDI	CATATG	1 cut(s)	499
Fnu4HI	GCNGC	8 cut(s)	17, 67, 356, 662, 674, 677, 804, 807
FokI	GGATG	3 cut(s)	131, 524, 848
FriOI	GRGCYC	2 cut(s)	42, 819
Fsp4HI	GCNGC	8 cut(s)	17, 67, 356, 662, 674, 677, 804, 807
FspBI	CTAG	4 cut(s)	249, 359, 407, 848
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	8 cut(s)	17, 67, 356, 662, 674, 677, 804, 807
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	2 cut(s)	447, 875
HgaI	GACGC	2 cut(s)	58, 291
HhaI	GCGC	1 cut(s)	83
Hin1I	GRCGYC	2 cut(s)	81, 534
Hin1II	CATG	3 cut(s)	389, 772, 894
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	5 cut(s)	454, 569, 618, 883, 903
HpaII	CCGG	2 cut(s)	447, 875
HphI	GGTGA	2 cut(s)	78, 889
Hpy166II	GTNNAC	2 cut(s)	281, 532
Hpy188I	TCNGA	4 cut(s)	35, 118, 870, 888
Hpy188III	TCNNGA	4 cut(s)	143, 407, 506, 820
Hpy8I	GTNNAC	2 cut(s)	281, 532
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	160, 205
HpyCH4III	ACNGT	3 cut(s)	296, 529, 731
HpyCH4IV	ACGT	2 cut(s)	99, 534
HpyCH4V	TGCA	3 cut(s)	379, 641, 724
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 51, 72, 141, 658, 670
HpyF3I	CTNAG	4 cut(s)	62, 239, 324, 657
HpySE526I	ACGT	2 cut(s)	99, 534
Hsp92I	GRCGYC	2 cut(s)	81, 534
Hsp92II	CATG	3 cut(s)	389, 772, 894
HspAI	GCGC	1 cut(s)	81
KasI	GGCGCC	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	508
LmnI	GCTCC	2 cut(s)	140, 814
Lsp1109I	GCAGC	8 cut(s)	3, 53, 342, 648, 660, 663, 790, 793
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	4 cut(s)	249, 359, 407, 848
MaeII	ACGT	2 cut(s)	99, 534
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	1 cut(s)	510
MboI	GATC	1 cut(s)	508
MboII	GAAGA	5 cut(s)	94, 163, 463, 712, 892
MhlI	GDGCHC	2 cut(s)	42, 819
MluCI	AATT	3 cut(s)	166, 395, 489
Mly113I	GGCGCC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	864
MseI	TTAA	1 cut(s)	564
MspA1I	CMGCKG	3 cut(s)	16, 66, 521
MspI	CCGG	2 cut(s)	447, 875
MspR9I	CCNGG	1 cut(s)	448
MvnI	CGCG	2 cut(s)	144, 821
MwoI	GCNNNNNNNGC	6 cut(s)	16, 51, 72, 141, 658, 670
NarI	GGCGCC	1 cut(s)	81
NciI	CCSGG	1 cut(s)	448
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	1 cut(s)	508
NlaIII	CATG	3 cut(s)	389, 772, 894
NlaIV	GGNNCC	3 cut(s)	82, 109, 136
NmeAIII	GCCGAG	4 cut(s)	21, 72, 182, 694
NmuCI	GTSAC	1 cut(s)	319
NruI	TCGCGA	2 cut(s)	144, 821
PceI	AGGCCT	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	864
PfeI	GAWTC	5 cut(s)	454, 569, 618, 883, 903
PflFI	GACNNNGTC	1 cut(s)	202
PinAI	ACCGGT	1 cut(s)	874
PkrI	GCNGC	8 cut(s)	18, 68, 357, 663, 675, 678, 805, 808
PluTI	GGCGCC	1 cut(s)	84
PshBI	ATTAAT	1 cut(s)	564
Psp124BI	GAGCTC	2 cut(s)	42, 819
PspN4I	GGNNCC	3 cut(s)	82, 109, 136
PspPI	GGNCC	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	202
PvuII	CAGCTG	2 cut(s)	66, 521
RruI	TCGCGA	2 cut(s)	144, 821
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SacI	GAGCTC	2 cut(s)	42, 819
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	8 cut(s)	17, 67, 356, 662, 674, 677, 804, 807
Sau3AI	GATC	1 cut(s)	508
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	448
SduI	GDGCHC	2 cut(s)	42, 819
SfaNI	GCATC	1 cut(s)	171
SfoI	GGCGCC	1 cut(s)	82
SinI	GGWCC	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	3 cut(s)	166, 395, 489
SseBI	AGGCCT	1 cut(s)	54
SsiI	CCGC	5 cut(s)	14, 154, 311, 635, 900
SspDI	GGCGCC	1 cut(s)	80
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	4 cut(s)	249, 359, 407, 848
SstI	GAGCTC	2 cut(s)	42, 819
StuI	AGGCCT	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	446
TaaI	ACNGT	3 cut(s)	296, 529, 731
TaiI	ACGT	2 cut(s)	102, 537
TaqI	TCGA	2 cut(s)	174, 369
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	3 cut(s)	166, 395, 489
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	5 cut(s)	454, 569, 618, 883, 903
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	2 cut(s)	441, 762
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	8 cut(s)	16, 66, 355, 661, 673, 676, 803, 806
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	2 cut(s)	451, 785
TspGWI	ACGGA	2 cut(s)	127, 174
TspRI	CASTG	2 cut(s)	441, 762
Tth111I	GACNNNGTC	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	107
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	2 cut(s)	395, 489
XbaI	TCTAGA	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	864
XspI	CTAG	4 cut(s)	249, 359, 407, 848
ZraI	GACGTC	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.