Rw6G002680

L-galactose dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011375
Physical Location & Seq
Forward (+)
4358777 .. 4363477
4701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G002680.1

Sequence Viewer

Length: 945 bp
ATGATACTCAAATCTTGTTATAAAGTACATAATGGGCATTTCGGTTGCTCCAACCCAACCAAGATATTTCAGTTTCCAGAGACATATTCCCCACTTCCACTACTTCACTTCCTAAATTCCTTCACAACCAAACCTCTGTCAAAGCAATGGCCAAGGTACTATGGAGGGACATTGTCAGAGAAGGTGCTTGGTAAAACACTAAAGGCTCTAGGAGTTCCAAGGAGTGAGTATATTGTGGCAACAAAGTGCGGACGATACGCTGAAGGTTTCGATTTCAGTGCTGATAGAGTGACTAAGAGCATCGATGAGAGCTTGGAAAGGTTGCAGCTTGATTACGTTGATATTTTGCAATGCCATGACATTGAATTTGGGAATCTCGATCAGATTGTCAATGAGACAATTCCCGCTCTACAGAAACTGAAAGAAGCAGGGAAGATCCGTTTCATTGGTATCACGGGACTTCCTTTGGGAGTTTTCACATATGTTCTTGACCGGGTACCACCTGGCACAGTGGACGTTGTTCTGTCATATTGCCATTACAGTATTAATGATTCAGCACTGGAGGATTTACTGCCTTACCTGAAGAGCAAAGGTGTTGGTGTAATTAGTGCTTCTCCACTTGCAATGGGGCTTCTCACTGAGCGTGGTCCTCCAGAATGGCATCCAGCATCTCCTGAACTCAAGTCTACTTGTCAAGCTGCTGCTTTGTATTGTAAAGAGAGAGGGAAGAATATTTCAAAGTTAGCTATGCAATACAGCTTGTCCAATAAGGATATCTCATCAGTGCTGGTTGGCATGAACTCTGTTAAACAGGTTGAGGAAAATGTTGCTGCTGCTGTGGAGCTTTCAACTGTTGGGAAAGATGAGCAAACCATATCAGAGGTTGAAGCTATTCTGAAACCTGTCAAGAATCAGACTTGGCCTAGTGGAATCCAGCAGAGCTAA

Protein Analysis

314

Amino Acids

34.63

Weight (kDa)

6.99

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 53 - 283 2.2e-44 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011375)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33670
fragaria_vesca FvH4_2g02330 FvH4_2g02330
malus_domestica MD05G1113100.v1.1 MD10G1115600.v1.1
prunus_persica Prupe.8G157600_v2.0.a1 Prupe.8G157600_v2.0.a1
pyrus_communis pycom05g10830 pycom10g10010
rosa_chinensis RchiOBHm_Chr6g0246091
rosa_laevigata RLG00000015271
rosa_multiflora Rmu_sc0004042.1_g000009 Rmu_sc0009451.1_g000013
rosa_roxburghii Rroxscaffold_7G00214970
rosa_rugosa Rorug05G0519000
rosa_samantha Rh6AG033300 Rh6BG028800 Rh6CG029000 Rh6DG028100
rosa_wichuraiana Rw6G002680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 21
Acc65I GGTACC 1 cut(s) 496
AccB1I GGYRCC 1 cut(s) 496
AccBSI CCGCTC 1 cut(s) 407
AccI GTMKAC 1 cut(s) 686
AciI CCGC 2 cut(s) 249, 405
AclWI GGATC 1 cut(s) 430
AcoI YGGCCR 1 cut(s) 149
AcsI RAATTY 2 cut(s) 115, 365
AcuI CTGAAG 2 cut(s) 282, 602
AfaI GTAC 3 cut(s) 27, 158, 498
AgsI TTSAA 4 cut(s) 365, 738, 849, 887
AjnI CCWGG 1 cut(s) 502
AluBI AGCT 8 cut(s) 312, 328, 698, 746, 759, 844, 890, 942
AluI AGCT 8 cut(s) 312, 328, 698, 746, 759, 844, 890, 942
Alw26I GTCTC 2 cut(s) 74, 389
AlwI GGATC 1 cut(s) 430
AlwNI CAGNNNCTG 1 cut(s) 418
AoxI GGCC 2 cut(s) 149, 920
ApeKI GCWGC 5 cut(s) 325, 698, 701, 830, 833
ApoI RAATTY 2 cut(s) 115, 365
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AseI ATTAAT 1 cut(s) 546
Asp700I GAANNNNTTC 1 cut(s) 891
Asp718I GGTACC 1 cut(s) 496
AspS9I GGNCC 1 cut(s) 647
AsuC2I CCSGG 1 cut(s) 494
AvaII GGWCC 1 cut(s) 647
BalI TGGCCA 1 cut(s) 151
BanI GGYRCC 1 cut(s) 496
BbvI GCAGC 5 cut(s) 337, 685, 688, 817, 820
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 1 cut(s) 504
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 2 cut(s) 74, 389
BfaI CTAG 2 cut(s) 209, 924
BfmI CTRYAG 1 cut(s) 410
BisI GCNGC 5 cut(s) 326, 699, 702, 831, 834
BlsI GCNGC 5 cut(s) 327, 700, 703, 832, 835
Bme1390I CCNGG 2 cut(s) 494, 504
Bme18I GGWCC 1 cut(s) 647
BmgT120I GGNCC 1 cut(s) 647
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 2 cut(s) 494, 504
BmsI GCATC 3 cut(s) 309, 670, 677
BpmI CTGGAG 2 cut(s) 581, 636
BpuEI CTTGAG 1 cut(s) 665
BpuMI CCSGG 1 cut(s) 494
Bsa29I ATCGAT 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 152, 218
Bse1I ACTGG 1 cut(s) 564
Bse3DI GCAATG 3 cut(s) 152, 356, 630
BseBI CCWGG 1 cut(s) 504
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 152, 218
BseGI GGATG 1 cut(s) 661
BseMI GCAATG 3 cut(s) 152, 356, 630
BseMII CTCAG 1 cut(s) 630
BseNI ACTGG 1 cut(s) 564
BseXI GCAGC 5 cut(s) 337, 685, 688, 817, 820
BshFI GGCC 2 cut(s) 151, 922
BshNI GGYRCC 1 cut(s) 496
BshVI ATCGAT 1 cut(s) 303
BsiSI CCGG 1 cut(s) 493
BslFI GGGAC 2 cut(s) 181, 471
BsmAI GTCTC 2 cut(s) 74, 389
BsmFI GGGAC 2 cut(s) 181, 471
BsnI GGCC 2 cut(s) 151, 922
Bsp143I GATC 2 cut(s) 379, 435
BspACI CCGC 2 cut(s) 249, 405
BspANI GGCC 2 cut(s) 151, 922
BspCNI CTCAG 1 cut(s) 631
BspDI ATCGAT 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 498
BspPI GGATC 1 cut(s) 430
BspQI GCTCTTC 1 cut(s) 578
BspT107I GGYRCC 1 cut(s) 496
BsrBI CCGCTC 1 cut(s) 407
BsrDI GCAATG 3 cut(s) 152, 356, 630
BsrI ACTGG 1 cut(s) 564
BssECI CCNNGG 2 cut(s) 152, 218
BssMI GATC 2 cut(s) 379, 435
BssT1I CCWWGG 2 cut(s) 152, 218
Bst2UI CCWGG 1 cut(s) 504
Bst4CI ACNGT 3 cut(s) 511, 542, 853
Bst6I CTCTTC 1 cut(s) 578
BstDEI CTNAG 2 cut(s) 294, 639
BstF5I GGATG 1 cut(s) 661
BstKTI GATC 2 cut(s) 382, 438
BstMAI GTCTC 2 cut(s) 74, 389
BstMBI GATC 2 cut(s) 379, 435
BstNI CCWGG 1 cut(s) 504
BstSCI CCNGG 2 cut(s) 492, 502
BstSFI CTRYAG 1 cut(s) 410
BstV1I GCAGC 5 cut(s) 337, 685, 688, 817, 820
BstX2I RGATCY 1 cut(s) 435
BstYI RGATCY 1 cut(s) 435
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 2 cut(s) 151, 922
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 1 cut(s) 661
BtsIMutI CAGTG 5 cut(s) 283, 516, 557, 636, 789
CaiI CAGNNNCTG 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 647
ClaI ATCGAT 1 cut(s) 303
Csp6I GTAC 3 cut(s) 26, 157, 497
CviAII CATG 2 cut(s) 356, 796
CviQI GTAC 3 cut(s) 26, 157, 497
DdeI CTNAG 2 cut(s) 294, 639
DpnI GATC 2 cut(s) 381, 437
DpnII GATC 2 cut(s) 379, 435
EaeI YGGCCR 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
Eco130I CCWWGG 2 cut(s) 152, 218
Eco32I GATATC 1 cut(s) 775
Eco47I GGWCC 1 cut(s) 647
Eco57I CTGAAG 2 cut(s) 282, 602
EcoRII CCWGG 1 cut(s) 502
EcoRV GATATC 1 cut(s) 775
EcoT14I CCWWGG 2 cut(s) 152, 218
ErhI CCWWGG 2 cut(s) 152, 218
FaeI CATG 2 cut(s) 359, 799
FaqI GGGAC 2 cut(s) 181, 471
FatI CATG 2 cut(s) 355, 795
FauI CCCGC 1 cut(s) 412
FauNDI CATATG 1 cut(s) 481
FblI GTMKAC 1 cut(s) 686
Fnu4HI GCNGC 5 cut(s) 326, 699, 702, 831, 834
FokI GGATG 1 cut(s) 648
Fsp4HI GCNGC 5 cut(s) 326, 699, 702, 831, 834
FspBI CTAG 2 cut(s) 209, 924
GluI GCNGC 5 cut(s) 326, 699, 702, 831, 834
GsuI CTGGAG 2 cut(s) 581, 636
HaeIII GGCC 2 cut(s) 151, 922
HapII CCGG 1 cut(s) 493
Hin1II CATG 2 cut(s) 359, 799
HinfI GANTC 4 cut(s) 373, 551, 910, 930
HpaII CCGG 1 cut(s) 493
Hpy166II GTNNAC 2 cut(s) 514, 687
Hpy188I TCNGA 5 cut(s) 178, 384, 880, 897, 915
Hpy188III TCNNGA 6 cut(s) 77, 377, 488, 653, 674, 907
Hpy8I GTNNAC 2 cut(s) 514, 687
HpyAV CCTTC 3 cut(s) 130, 175, 257
HpyCH4III ACNGT 3 cut(s) 511, 542, 853
HpyCH4IV ACGT 2 cut(s) 336, 516
HpyCH4V TGCA 4 cut(s) 325, 349, 623, 751
HpyF3I CTNAG 2 cut(s) 294, 639
HpySE526I ACGT 2 cut(s) 336, 516
Hsp92II CATG 2 cut(s) 359, 799
KpnI GGTACC 1 cut(s) 500
Kzo9I GATC 2 cut(s) 379, 435
LguI GCTCTTC 1 cut(s) 578
LmnI GCTCC 2 cut(s) 53, 841
Lsp1109I GCAGC 5 cut(s) 337, 685, 688, 817, 820
LweI GCATC 3 cut(s) 309, 670, 677
MaeI CTAG 2 cut(s) 209, 924
MaeII ACGT 2 cut(s) 336, 516
MaeIII GTNAC 1 cut(s) 289
MalI GATC 2 cut(s) 381, 437
MbiI CCGCTC 1 cut(s) 407
MboI GATC 2 cut(s) 379, 435
MboII GAAGA 3 cut(s) 445, 595, 739
MflI RGATCY 1 cut(s) 435
MlsI TGGCCA 1 cut(s) 151
MluCI AATT 4 cut(s) 115, 365, 399, 603
MluNI TGGCCA 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 7 cut(s) 144, 158, 556, 660, 716, 811, 874
Mox20I TGGCCA 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 891
MscI TGGCCA 1 cut(s) 151
MseI TTAA 2 cut(s) 546, 807
Msp20I TGGCCA 1 cut(s) 151
MspI CCGG 1 cut(s) 493
MspR9I CCNGG 2 cut(s) 494, 504
MvaI CCWGG 1 cut(s) 504
NciI CCSGG 1 cut(s) 494
NdeI CATATG 1 cut(s) 481
NdeII GATC 2 cut(s) 379, 435
NlaIII CATG 2 cut(s) 359, 799
NlaIV GGNNCC 1 cut(s) 498
NmuCI GTSAC 1 cut(s) 289
PciSI GCTCTTC 1 cut(s) 578
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 4 cut(s) 373, 551, 910, 930
PflFI GACNNNGTC 1 cut(s) 172
PkrI GCNGC 5 cut(s) 327, 700, 703, 832, 835
PshBI ATTAAT 1 cut(s) 546
PsiI TTATAA 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 502
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 1 cut(s) 647
PstNI CAGNNNCTG 1 cut(s) 418
PsuI RGATCY 1 cut(s) 435
PsyI GACNNNGTC 1 cut(s) 172
RsaI GTAC 3 cut(s) 27, 158, 498
RsaNI GTAC 3 cut(s) 26, 157, 497
SapI GCTCTTC 1 cut(s) 578
SaqAI TTAA 2 cut(s) 546, 807
SatI GCNGC 5 cut(s) 326, 699, 702, 831, 834
Sau3AI GATC 2 cut(s) 379, 435
Sau96I GGNCC 1 cut(s) 647
ScrFI CCNGG 2 cut(s) 494, 504
SfaNI GCATC 3 cut(s) 309, 670, 677
SfcI CTRYAG 1 cut(s) 410
SinI GGWCC 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
Sse9I AATT 4 cut(s) 115, 365, 399, 603
SsiI CCGC 2 cut(s) 249, 405
SspI AATATT 1 cut(s) 733
SspMI CTAG 2 cut(s) 209, 924
StyD4I CCNGG 2 cut(s) 492, 502
StyI CCWWGG 2 cut(s) 152, 218
TaaI ACNGT 3 cut(s) 511, 542, 853
TaiI ACGT 2 cut(s) 339, 519
TaqI TCGA 3 cut(s) 270, 303, 378
TasI AATT 4 cut(s) 115, 365, 399, 603
TatI WGTACW 1 cut(s) 25
TfiI GAWTC 4 cut(s) 373, 551, 910, 930
Tru1I TTAA 2 cut(s) 546, 807
Tru9I TTAA 2 cut(s) 546, 807
TscAI CASTG 5 cut(s) 283, 516, 564, 643, 789
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 5 cut(s) 325, 698, 701, 830, 833
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 433, 812
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 5 cut(s) 283, 516, 564, 643, 789
Tth111I GACNNNGTC 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 647
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 2 cut(s) 115, 365
XmiI GTMKAC 1 cut(s) 686
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 2 cut(s) 209, 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.