Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011375

Physical Location & Seq

Genomic Coordinates Reverse (-)

4303916 .. 4309151

Gene Structure 5236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG028800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCAAGGTTGAACTTCGAGAACTGGGTAACACAGGGCTCAAGCTCAGCTGCGTTGGCTTCGGCGCTTCCCCTCTCGGCAACGTTTTCGGCCCAGTCTCCGACGAAGAAGCCATCGGCTCCGTTCGCGAAGCTTTTCGCCGGGGCATCAACTTCTTCGACACCTCTCCGTACTATGGAGGGACATTGTCAGAGAAGGTGCTTGGTAAAACACTAAAGGCTCTAGGAGTTCCAAGGAGTGAGTATATTGTGGCAACAAAGTGCGGACGATATGCTGAAGGTTTCGATTTCAGTGCTGATAGAGTGACTAAGAGCATCGATGAGAGCTTGGAAAGGTTGCAGCTAGATTACGTTGATATATTGCAATGCCATGACATTGAATTTGGAAATCTCGATCAGATTGTCAATGAGACAATTCCCGCTCTACAGAAACTGCAAGAAGAAGGGAAGATCCGTTTCATTGGTATCACGGGACTTCCTTTGGGAGTTTTCACATATGTTCTTGACCGGGTACCACCTGGCACAGTGGACGTTGTTCTGTCATATTGCCATTACAGTATTAATGATTCAGCACTGGAGGATTTACTGCCTTACCTGAAGAGCAAAGGTGTTGGTGTAATTAGTGCTTCTCCACTTGCAATGGGGCTTCTCACTGAGCGTGGTCCTCCAGAATGGCATCCAGCATCTCCTGAACTCAAGTCTACCTGTCAAGCTGCTGCTTTGTATTGTAAAGAGAGAGGGAAGAATATTTCAAAGTTAGCTATGCAATACAGCTTGTCCAATAAGGATATCTCTTCAGTGCTGGTTGGCATGAACTCTGTTAAACAGGTTGAGGAAAATGTTGCTGCTGCTGTGGAGCTTTCAACTGTTGGGAAAGATGAGCAAACCATATCAGAGGTTGAAGCTATTCTGAAACCTGTCAAGAATCAGACTTGGCCTAGTGGAATCCAGCAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0010349 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016645 GO:0016646 GO:0018130 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045290 GO:0046364 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0070484 GO:0070485 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

319

Amino Acids

34.66

Weight (kDa)

5.14

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	19 - 288	4.5e-57	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33670
fragaria_vesca	FvH4_2g02330 FvH4_2g02330
malus_domestica	MD05G1113100.v1.1 MD10G1115600.v1.1
prunus_persica	Prupe.8G157600_v2.0.a1 Prupe.8G157600_v2.0.a1
pyrus_communis	pycom05g10830 pycom10g10010
rosa_chinensis	RchiOBHm_Chr6g0246091
rosa_laevigata	RLG00000015271
rosa_multiflora	Rmu_sc0004042.1_g000009 Rmu_sc0009451.1_g000013
rosa_roxburghii	Rroxscaffold_7G00214970
rosa_rugosa	Rorug05G0519000
rosa_samantha	Rh6AG033300 Rh6BG028800 Rh6CG029000 Rh6DG028100
rosa_wichuraiana	Rw6G002680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	511
AccB1I	GGYRCC	1 cut(s)	511
AccBSI	CCGCTC	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	701
AccII	CGCG	1 cut(s)	129
AciI	CCGC	2 cut(s)	264, 420
AclI	AACGTT	1 cut(s)	84
AclWI	GGATC	1 cut(s)	445
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	3 cut(s)	297, 617, 780
AfaI	GTAC	2 cut(s)	173, 513
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	5 cut(s)	14, 380, 753, 864, 902
AjnI	CCWGG	1 cut(s)	517
Alw26I	GTCTC	2 cut(s)	103, 404
AlwI	GGATC	1 cut(s)	445
AlwNI	CAGNNNCTG	1 cut(s)	433
AoxI	GGCC	3 cut(s)	3, 91, 935
ApeKI	GCWGC	6 cut(s)	51, 340, 713, 716, 845, 848
ApoI	RAATTY	1 cut(s)	380
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AseI	ATTAAT	1 cut(s)	561
Asp700I	GAANNNNTTC	2 cut(s)	135, 906
Asp718I	GGTACC	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	92, 662
AsuC2I	CCSGG	2 cut(s)	143, 509
AvaII	GGWCC	1 cut(s)	662
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	42
BbvI	GCAGC	6 cut(s)	38, 352, 700, 703, 832, 835
BccI	CCATC	1 cut(s)	122
BcgI	CGANNNNNNTGC	4 cut(s)	70, 104, 275, 309
BciT130I	CCWGG	1 cut(s)	519
BcnI	CCSGG	2 cut(s)	143, 509
BcoDI	GTCTC	2 cut(s)	103, 404
BfaI	CTAG	3 cut(s)	224, 344, 939
BfmI	CTRYAG	1 cut(s)	425
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	6 cut(s)	52, 341, 714, 717, 846, 849
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	6 cut(s)	53, 342, 715, 718, 847, 850
Bme1390I	CCNGG	3 cut(s)	143, 509, 519
Bme18I	GGWCC	1 cut(s)	662
BmgT120I	GGNCC	2 cut(s)	92, 662
BmiI	GGNNCC	2 cut(s)	121, 513
BmrFI	CCNGG	3 cut(s)	143, 509, 519
BmrI	ACTGGG	2 cut(s)	35, 89
BmsI	GCATC	4 cut(s)	156, 324, 685, 692
BmuI	ACTGGG	2 cut(s)	35, 89
BpmI	CTGGAG	2 cut(s)	596, 651
Bpu1102I	GCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	2 cut(s)	26, 680
BpuMI	CCSGG	2 cut(s)	143, 509
Bsa29I	ATCGAT	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	6, 142, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	3 cut(s)	30, 95, 579
Bse3DI	GCAATG	2 cut(s)	371, 645
BseBI	CCWGG	1 cut(s)	519
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	6, 142, 233
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	2 cut(s)	371, 645
BseMII	CTCAG	2 cut(s)	61, 645
BseNI	ACTGG	3 cut(s)	30, 95, 579
BseXI	GCAGC	6 cut(s)	38, 352, 700, 703, 832, 835
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	3 cut(s)	5, 93, 937
BshNI	GGYRCC	1 cut(s)	511
BshVI	ATCGAT	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	142, 508
BslFI	GGGAC	2 cut(s)	196, 486
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	2 cut(s)	103, 404
BsmFI	GGGAC	2 cut(s)	196, 486
BsnI	GGCC	3 cut(s)	5, 93, 937
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	394, 450
Bsp1720I	GCTNAGC	1 cut(s)	47
Bsp68I	TCGCGA	1 cut(s)	129
BspACI	CCGC	2 cut(s)	264, 420
BspANI	GGCC	3 cut(s)	5, 93, 937
BspCNI	CTCAG	2 cut(s)	60, 646
BspDI	ATCGAT	1 cut(s)	318
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	121, 513
BspPI	GGATC	1 cut(s)	445
BspQI	GCTCTTC	1 cut(s)	593
BspT107I	GGYRCC	1 cut(s)	511
BsrBI	CCGCTC	1 cut(s)	422
BsrDI	GCAATG	2 cut(s)	371, 645
BsrI	ACTGG	3 cut(s)	30, 95, 579
BssECI	CCNNGG	3 cut(s)	6, 142, 233
BssMI	GATC	2 cut(s)	394, 450
BssT1I	CCWWGG	2 cut(s)	6, 233
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	3 cut(s)	526, 557, 868
Bst6I	CTCTTC	2 cut(s)	593, 799
BstDEI	CTNAG	3 cut(s)	47, 309, 654
BstF5I	GGATG	1 cut(s)	676
BstFNI	CGCG	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	397, 453
BstMAI	GTCTC	2 cut(s)	103, 404
BstMBI	GATC	2 cut(s)	394, 450
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 126
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	3 cut(s)	141, 507, 517
BstSFI	CTRYAG	1 cut(s)	425
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	6 cut(s)	38, 352, 700, 703, 832, 835
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	5, 93, 937
BsuTUI	ATCGAT	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	676
BtsIMutI	CAGTG	5 cut(s)	298, 531, 572, 651, 804
BtuMI	TCGCGA	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	433
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	92, 662
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	172, 512
CviAII	CATG	2 cut(s)	371, 811
CviQI	GTAC	2 cut(s)	172, 512
DdeI	CTNAG	3 cut(s)	47, 309, 654
DpnI	GATC	2 cut(s)	396, 452
DpnII	GATC	2 cut(s)	394, 450
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	593, 799
EarI	CTCTTC	2 cut(s)	593, 799
Eco130I	CCWWGG	2 cut(s)	6, 233
Eco24I	GRGCYC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	790
Eco47I	GGWCC	1 cut(s)	662
Eco57I	CTGAAG	3 cut(s)	297, 617, 780
EcoRII	CCWGG	1 cut(s)	517
EcoRV	GATATC	1 cut(s)	790
EcoT14I	CCWWGG	2 cut(s)	6, 233
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	2 cut(s)	6, 233
FaeI	CATG	2 cut(s)	374, 814
FaqI	GGGAC	2 cut(s)	196, 486
FatI	CATG	2 cut(s)	370, 810
FauI	CCCGC	1 cut(s)	427
FauNDI	CATATG	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	701
Fnu4HI	GCNGC	6 cut(s)	52, 341, 714, 717, 846, 849
FokI	GGATG	1 cut(s)	663
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	6 cut(s)	52, 341, 714, 717, 846, 849
FspBI	CTAG	3 cut(s)	224, 344, 939
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	6 cut(s)	52, 341, 714, 717, 846, 849
GsuI	CTGGAG	2 cut(s)	596, 651
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	5, 93, 937
HapII	CCGG	2 cut(s)	142, 508
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	374, 814
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	3 cut(s)	566, 925, 945
HpaII	CCGG	2 cut(s)	142, 508
Hpy166II	GTNNAC	2 cut(s)	529, 702
Hpy188I	TCNGA	6 cut(s)	103, 193, 399, 895, 912, 930
Hpy188III	TCNNGA	7 cut(s)	20, 128, 392, 503, 668, 689, 922
Hpy8I	GTNNAC	2 cut(s)	529, 702
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	3 cut(s)	190, 272, 437
HpyCH4III	ACNGT	3 cut(s)	526, 557, 868
HpyCH4IV	ACGT	3 cut(s)	84, 351, 531
HpyCH4V	TGCA	5 cut(s)	340, 364, 436, 638, 766
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 126
HpyF3I	CTNAG	3 cut(s)	47, 309, 654
HpySE526I	ACGT	3 cut(s)	84, 351, 531
Hsp92II	CATG	2 cut(s)	374, 814
HspAI	GCGC	1 cut(s)	66
KpnI	GGTACC	1 cut(s)	515
Kzo9I	GATC	2 cut(s)	394, 450
LguI	GCTCTTC	1 cut(s)	593
LmnI	GCTCC	2 cut(s)	125, 856
Lsp1109I	GCAGC	6 cut(s)	38, 352, 700, 703, 832, 835
LweI	GCATC	4 cut(s)	156, 324, 685, 692
MaeI	CTAG	3 cut(s)	224, 344, 939
MaeII	ACGT	3 cut(s)	84, 351, 531
MaeIII	GTNAC	2 cut(s)	29, 304
MalI	GATC	2 cut(s)	396, 452
MbiI	CCGCTC	1 cut(s)	422
MboI	GATC	2 cut(s)	394, 450
MboII	GAAGA	7 cut(s)	119, 148, 452, 460, 610, 754, 786
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	380, 414, 618
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	8 cut(s)	84, 173, 175, 571, 675, 731, 826, 889
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	135, 906
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	561, 822
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	2 cut(s)	142, 508
MspR9I	CCNGG	3 cut(s)	143, 509, 519
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	57, 126
NciI	CCSGG	2 cut(s)	143, 509
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	2 cut(s)	394, 450
NlaIII	CATG	2 cut(s)	374, 814
NlaIV	GGNNCC	2 cut(s)	121, 513
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	304
NruI	TCGCGA	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	593
PdmI	GAANNNNTTC	2 cut(s)	135, 906
PfeI	GAWTC	3 cut(s)	566, 925, 945
PflFI	GACNNNGTC	1 cut(s)	187
PkrI	GCNGC	6 cut(s)	53, 342, 715, 718, 847, 850
PshBI	ATTAAT	1 cut(s)	561
Psp1406I	AACGTT	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	2 cut(s)	121, 513
PspPI	GGNCC	2 cut(s)	92, 662
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	450
PsyI	GACNNNGTC	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	51
RruI	TCGCGA	1 cut(s)	129
RsaI	GTAC	2 cut(s)	173, 513
RsaNI	GTAC	2 cut(s)	172, 512
SapI	GCTCTTC	1 cut(s)	593
SaqAI	TTAA	2 cut(s)	561, 822
SatI	GCNGC	6 cut(s)	52, 341, 714, 717, 846, 849
Sau3AI	GATC	2 cut(s)	394, 450
Sau96I	GGNCC	2 cut(s)	92, 662
ScrFI	CCNGG	3 cut(s)	143, 509, 519
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	4 cut(s)	156, 324, 685, 692
SfcI	CTRYAG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	662
SmlI	CTYRAG	2 cut(s)	41, 695
SmoI	CTYRAG	2 cut(s)	41, 695
Sse9I	AATT	3 cut(s)	380, 414, 618
SsiI	CCGC	2 cut(s)	264, 420
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	3 cut(s)	224, 344, 939
StyD4I	CCNGG	3 cut(s)	141, 507, 517
StyI	CCWWGG	2 cut(s)	6, 233
TaaI	ACNGT	3 cut(s)	526, 557, 868
TaiI	ACGT	3 cut(s)	87, 354, 534
TaqI	TCGA	5 cut(s)	19, 159, 285, 318, 393
TasI	AATT	3 cut(s)	380, 414, 618
TfiI	GAWTC	3 cut(s)	566, 925, 945
Tru1I	TTAA	2 cut(s)	561, 822
Tru9I	TTAA	2 cut(s)	561, 822
TscAI	CASTG	5 cut(s)	298, 531, 579, 658, 804
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	6 cut(s)	51, 340, 713, 716, 845, 848
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	448, 827
TspGWI	ACGGA	3 cut(s)	112, 159, 443
TspRI	CASTG	5 cut(s)	298, 531, 579, 658, 804
Tth111I	GACNNNGTC	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	662
VspI	ATTAAT	1 cut(s)	561
XapI	RAATTY	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	701
XmnI	GAANNNNTTC	2 cut(s)	135, 906
XspI	CTAG	3 cut(s)	224, 344, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.