Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007110

Physical Location & Seq

Genomic Coordinates Forward (+)

16174756 .. 16176328

Gene Structure 1573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G33690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGATCTGGAAACTGAAAATCGAATAGCTTCCATTCTTTTAAGAGAAGCAGCAGAATTGAGGAGACAAGCTGAGAAAGATGGCGTCAGAGCATATCTTGAGAAGCCTAATGTAAGGCATCGACCTAACTCTAGATTTCTCACTGCTACAGTTCTTGGTGTTCAGCAAGCAAACAAAGCTGTGGAAACCAATGAGATGTGGAGTCTTCGGAGTAAAGAGATTGAGTTTGGTGAAAGGCTCAAAAGAAAATCAAGAGATGAGAGCAGCAATGGTCAAAGTGAGCAGAACAATAGGAGGGATTTTTTAAAGAGATGTACTTCAGTTGATGAGAATGTTACTACTACTAGTTTATCACCATCATCAAGCCGGAGCAGAAGCAAAAGATGGCAATCAGAGGATGATGATGATGAAGGCTTAGGAGATGTCGAGGTTAAGACTTTTCTCCAATCAAGGGTCAAGCGTGGCAGAGGTTCTGTTGGTGCTATGATGGATGAACCGCTACCCTGTCTTCCTGAGAGGGAATTGTCAAGAACTTCTGATACAGGAGATCGGAAGCTAGTGATTCAGCCAGAGCGATCACCTTTATTGAGACGTAGGACAGATTCTTCTTCTTCCGACGAGGAGGAAGTTTACAAACGGGCTCATAGAAAGAGAAAGGAGCATAAGAAGAAACTTAGTAAGAAACACAAGTCAAAAGAGAAGAAAAGGGATAGGAAGAAGAGAAAATATGGTAGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

28.68

Weight (kDa)

10.02

Isoelectric Point (pI)

78.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33690
fragaria_vesca	FvH4_2g02710 FvH4_2g02710 FvH4_2g02710
malus_domestica	MD05G1110900.v1.1 MD10G1114400.v1.1
prunus_persica	Prupe.8G155900_v2.0.a1 Prupe.8G155900_v2.0.a1
pyrus_communis	pycom10g09880
rosa_chinensis	RchiOBHm_Chr6g0247131
rosa_laevigata	RLG00000015218 RLG00000030364
rosa_multiflora	Rmu_sc0004577.1_g000013
rosa_roxburghii	Rroxscaffold_7G00214320
rosa_rugosa	Rorug05G0522700 Rorug05G0522700 Rorug05G0522700 Rorug05G0522800 Rorug05G0522900 Rorug05G0522900
rosa_samantha	Rh6AG037900 Rh6BG032800 Rh6CG033600 Rh6DG031300
rosa_wichuraiana	Rw6G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	497
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	451
AhlI	ACTAGT	1 cut(s)	344
AluBI	AGCT	4 cut(s)	29, 71, 179, 556
AluI	AGCT	4 cut(s)	29, 71, 179, 556
Alw26I	GTCTC	2 cut(s)	58, 583
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	50, 264
Asp700I	GAANNNNTTC	1 cut(s)	28
AsuHPI	GGTGA	3 cut(s)	242, 345, 570
BanII	GRGCYC	1 cut(s)	643
BbsI	GAAGAC	2 cut(s)	197, 500
BbvI	GCAGC	2 cut(s)	62, 276
BccI	CCATC	4 cut(s)	74, 364, 378, 481
BcoDI	GTCTC	2 cut(s)	58, 583
BcuI	ACTAGT	1 cut(s)	344
BfaI	CTAG	4 cut(s)	132, 345, 557, 739
BfmI	CTRYAG	1 cut(s)	147
BisI	GCNGC	2 cut(s)	51, 265
BlsI	GCNGC	2 cut(s)	52, 266
BmsI	GCATC	1 cut(s)	127
BpiI	GAAGAC	2 cut(s)	197, 500
Bpu10I	CCTNAGC	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	388
BsaHI	GRCGYC	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse3DI	GCAATG	1 cut(s)	274
Bse8I	GATNNNNATC	1 cut(s)	388
BseGI	GGATG	2 cut(s)	403, 496
BseJI	GATNNNNATC	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	63, 504
BseRI	GAGGAG	2 cut(s)	76, 635
BseXI	GCAGC	2 cut(s)	62, 276
BsiSI	CCGG	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	2 cut(s)	58, 583
BsmBI	CGTCTC	1 cut(s)	583
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp143I	GATC	3 cut(s)	4, 547, 575
BspACI	CCGC	1 cut(s)	497
BspCNI	CTCAG	2 cut(s)	64, 505
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	274
BssMI	GATC	3 cut(s)	4, 547, 575
BssNI	GRCGYC	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	713
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	4 cut(s)	72, 415, 513, 674
BstF5I	GGATG	2 cut(s)	403, 496
BstKTI	GATC	3 cut(s)	7, 550, 578
BstMAI	GTCTC	2 cut(s)	58, 583
BstMBI	GATC	3 cut(s)	4, 547, 575
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	62, 276
BstV2I	GAAGAC	2 cut(s)	197, 500
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtsCI	GGATG	2 cut(s)	403, 496
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	168
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	315
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	4 cut(s)	72, 415, 513, 674
DpnI	GATC	3 cut(s)	6, 549, 577
DpnII	GATC	3 cut(s)	4, 547, 575
DraI	TTTAAA	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	713
EarI	CTCTTC	1 cut(s)	713
Eco24I	GRGCYC	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	643
Esp3I	CGTCTC	1 cut(s)	583
FaiI	YATR	5 cut(s)	94, 485, 645, 663, 729
Fnu4HI	GCNGC	2 cut(s)	51, 265
FokI	GGATG	2 cut(s)	410, 503
FriOI	GRGCYC	1 cut(s)	643
Fsp4HI	GCNGC	2 cut(s)	51, 265
FspBI	CTAG	4 cut(s)	132, 345, 557, 739
GluI	GCNGC	2 cut(s)	51, 265
HapII	CCGG	1 cut(s)	367
HgaI	GACGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	84
HinfI	GANTC	3 cut(s)	202, 562, 602
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	3 cut(s)	242, 345, 570
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	6 cut(s)	89, 210, 394, 538, 552, 616
Hpy188III	TCNNGA	6 cut(s)	8, 98, 132, 252, 512, 528
Hpy8I	GTNNAC	1 cut(s)	631
Hpy99I	CGWCG	1 cut(s)	620
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	4 cut(s)	72, 415, 513, 674
HpySE526I	ACGT	1 cut(s)	592
Hsp92I	GRCGYC	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	4, 547, 575
LmnI	GCTCC	2 cut(s)	369, 658
LpnPI	CCDG	5 cut(s)	380, 517, 525, 528, 582
Lsp1109I	GCAGC	2 cut(s)	62, 276
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	4 cut(s)	132, 345, 557, 739
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	3 cut(s)	6, 549, 577
MboI	GATC	3 cut(s)	4, 547, 575
MboII	GAAGA	9 cut(s)	197, 500, 597, 600, 603, 679, 712, 727, 730
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	643
MluCI	AATT	2 cut(s)	56, 521
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	639
MnlI	CCTC	8 cut(s)	54, 288, 388, 421, 461, 510, 613, 616
MroXI	GAANNNNTTC	1 cut(s)	28
MseI	TTAA	3 cut(s)	41, 305, 432
MspI	CCGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	3 cut(s)	4, 547, 575
PdmI	GAANNNNTTC	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	562, 602
PkrI	GCNGC	2 cut(s)	52, 266
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PsrI	GAACNNNNNNTAC	2 cut(s)	523, 555
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SaqAI	TTAA	3 cut(s)	41, 305, 432
SatI	GCNGC	2 cut(s)	51, 265
Sau3AI	GATC	3 cut(s)	4, 547, 575
SchI	GAGTC	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	643
SetI	ASST	9 cut(s)	31, 73, 127, 181, 432, 472, 558, 583, 595
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SpeI	ACTAGT	1 cut(s)	344
Sse9I	AATT	2 cut(s)	56, 521
SsiI	CCGC	1 cut(s)	497
SspMI	CTAG	4 cut(s)	132, 345, 557, 739
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	3 cut(s)	22, 121, 426
TasI	AATT	2 cut(s)	56, 521
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	2 cut(s)	562, 602
Tru1I	TTAA	3 cut(s)	41, 305, 432
Tru9I	TTAA	3 cut(s)	41, 305, 432
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	2 cut(s)	50, 264
TspDTI	ATGAA	2 cut(s)	423, 507
TspRI	CASTG	1 cut(s)	148
XbaI	TCTAGA	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	28
XspI	CTAG	4 cut(s)	132, 345, 557, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.