Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007110

Physical Location & Seq

Genomic Coordinates Forward (+)

2160886 .. 2164554

Gene Structure 3669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02710.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGATCTTGAGACAGAGAACAGAATAGCTGCGATTCTTATGAGAGAAGCAGCAGAATTGCGGCGCCAAGCTGAGAAGGAAGGTGTCCATGCGTATCTTCAACAACCTAAAGCAAGATTTAAGCCAAATTCACGGTTCCTCAGTGCTACTGTTCGTGGTGTTGAACAAGCAAATAAAGCTGTGGAAGTGAATGAAATGTGGCGAATCCGGCAGAAAGAGCTTGAATTGGATGAAAGGCTTAAAGGCAAGATGAAGGATCCAAGCAGAAGTGACAGGAATCCTGGAAATGGTAACACTGCTAGAAGCGATAGTAAGAGGCACGCTGCTATGGATGATTATGCTAGTGCTACTTGTTCATCAAGTCAAAGAGTAGATGAGAGATGTCATTCAAGGGAAGAGAGTGGATTAAGAGACAAAGAACTTGAAGAATTCTTACATTCAAGGGTCAAGCGTGGCAGAGGTGCTGTTGGGTCGAGGATGGATGAAACAGGTCCATATCTACCACGTTCACATTCTGAGGAACAGGTAGCCGGTCCCAGTCTACTAGAACGTCGTGTTTATGGACCAAAGAAGCCTTCAAAGAAGTTATGTGATTCTTCTGAAGAGGAGCTTGACAACAGGAAGAGATCGAAAAAGGTTTCTTCTGGGAGCTCAAAGAAACATAAATCCAAGGATAAGTCTAAAGAGCGGAAAAAAAGAAAGAGGAAAGAAGAGAAAAGAAGTAAATATCATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

28.25

Weight (kDa)

9.88

Isoelectric Point (pI)

62.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33690
fragaria_vesca	FvH4_2g02710 FvH4_2g02710 FvH4_2g02710
malus_domestica	MD05G1110900.v1.1 MD10G1114400.v1.1
prunus_persica	Prupe.8G155900_v2.0.a1 Prupe.8G155900_v2.0.a1
pyrus_communis	pycom10g09880
rosa_chinensis	RchiOBHm_Chr6g0247131
rosa_laevigata	RLG00000015218 RLG00000030364
rosa_multiflora	Rmu_sc0004577.1_g000013
rosa_roxburghii	Rroxscaffold_7G00214320
rosa_rugosa	Rorug05G0522700 Rorug05G0522700 Rorug05G0522700 Rorug05G0522800 Rorug05G0522900 Rorug05G0522900
rosa_samantha	Rh6AG037900 Rh6BG032800 Rh6CG033600 Rh6DG031300
rosa_wichuraiana	Rw6G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	63
AccBSI	CCGCTC	1 cut(s)	688
AccI	GTMKAC	1 cut(s)	541
AciI	CCGC	2 cut(s)	61, 688
AclWI	GGATC	3 cut(s)	12, 251, 264
AcsI	RAATTY	2 cut(s)	127, 428
AcuI	CTGAAG	1 cut(s)	621
AcyI	GRCGYC	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	7 cut(s)	101, 164, 224, 390, 425, 441, 579
AjnI	CCWGG	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	2 cut(s)	559, 591
AluBI	AGCT	6 cut(s)	29, 71, 179, 220, 610, 651
AluI	AGCT	6 cut(s)	29, 71, 179, 220, 610, 651
Alw21I	GWGCWC	1 cut(s)	653
Alw26I	GTCTC	2 cut(s)	5, 405
AlwI	GGATC	3 cut(s)	12, 251, 264
ApeKI	GCWGC	3 cut(s)	29, 50, 323
ApoI	RAATTY	2 cut(s)	127, 428
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	3 cut(s)	491, 533, 563
AvaII	GGWCC	3 cut(s)	491, 533, 563
BamHI	GGATCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	653
BarI	GAAGNNNNNNTAC	2 cut(s)	417, 449
Bbv12I	GWGCWC	1 cut(s)	653
BbvI	GCAGC	3 cut(s)	16, 62, 310
BccI	CCATC	1 cut(s)	472
BciT130I	CCWGG	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	5, 405
BfaI	CTAG	3 cut(s)	300, 342, 545
BfoI	RGCGCY	1 cut(s)	67
BisI	GCNGC	4 cut(s)	30, 51, 62, 324
BlsI	GCNGC	4 cut(s)	31, 52, 63, 325
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	3 cut(s)	491, 533, 563
BmgT120I	GGNCC	3 cut(s)	491, 533, 563
BmiI	GGNNCC	4 cut(s)	65, 137, 258, 535
BmrFI	CCNGG	1 cut(s)	282
BmrI	ACTGGG	1 cut(s)	531
BmuI	ACTGGG	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	669
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	530
Bse1I	ACTGG	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	669
BseGI	GGATG	4 cut(s)	235, 337, 483, 487
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	3 cut(s)	63, 154, 507
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	3 cut(s)	16, 62, 310
BshNI	GGYRCC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	653
BsiSI	CCGG	2 cut(s)	208, 531
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	2 cut(s)	5, 405
BsmFI	GGGAC	1 cut(s)	519
Bsp1286I	GDGCHC	1 cut(s)	653
Bsp143I	GATC	3 cut(s)	4, 256, 626
BspACI	CCGC	2 cut(s)	61, 688
BspCNI	CTCAG	3 cut(s)	64, 153, 508
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	4 cut(s)	65, 137, 258, 535
BspPI	GGATC	3 cut(s)	12, 251, 264
BspT107I	GGYRCC	1 cut(s)	63
BsrBI	CCGCTC	1 cut(s)	688
BsrFI	RCCGGY	1 cut(s)	530
BsrI	ACTGG	1 cut(s)	537
BssAI	RCCGGY	1 cut(s)	530
BssECI	CCNNGG	1 cut(s)	669
BssMI	GATC	3 cut(s)	4, 256, 626
BssNI	GRCGYC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	669
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	135, 151
Bst6I	CTCTTC	4 cut(s)	390, 597, 617, 705
BstACI	GRCGYC	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	3 cut(s)	72, 140, 516
BstF5I	GGATG	4 cut(s)	235, 337, 483, 487
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	3 cut(s)	7, 259, 629
BstMAI	GTCTC	2 cut(s)	5, 405
BstMBI	GATC	3 cut(s)	4, 256, 626
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 208, 217
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	280
BstV1I	GCAGC	3 cut(s)	16, 62, 310
BstX2I	RGATCY	2 cut(s)	4, 256
BstYI	RGATCY	2 cut(s)	4, 256
BtsCI	GGATG	4 cut(s)	235, 337, 483, 487
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	148, 294
Cac8I	GCNNGC	1 cut(s)	321
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	3 cut(s)	491, 533, 563
CviAII	CATG	2 cut(s)	89, 731
DdeI	CTNAG	3 cut(s)	72, 140, 516
DinI	GGCGCC	1 cut(s)	65
DpnI	GATC	3 cut(s)	6, 258, 628
DpnII	GATC	3 cut(s)	4, 256, 626
Eam1104I	CTCTTC	4 cut(s)	390, 597, 617, 705
EarI	CTCTTC	4 cut(s)	390, 597, 617, 705
Ecl136II	GAGCTC	1 cut(s)	651
Eco130I	CCWWGG	1 cut(s)	669
Eco24I	GRGCYC	1 cut(s)	653
Eco47I	GGWCC	3 cut(s)	491, 533, 563
Eco53kI	GAGCTC	1 cut(s)	651
Eco57I	CTGAAG	1 cut(s)	621
EcoICRI	GAGCTC	1 cut(s)	651
EcoRI	GAATTC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	669
EcoT38I	GRGCYC	1 cut(s)	653
EgeI	GGCGCC	1 cut(s)	65
EheI	GGCGCC	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	669
FaeI	CATG	2 cut(s)	92, 734
FaiI	YATR	9 cut(s)	41, 90, 329, 339, 496, 561, 589, 663, 732
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	2 cut(s)	88, 730
FblI	GTMKAC	1 cut(s)	541
Fnu4HI	GCNGC	4 cut(s)	30, 51, 62, 324
FokI	GGATG	4 cut(s)	242, 344, 490, 494
FriOI	GRGCYC	1 cut(s)	653
Fsp4HI	GCNGC	4 cut(s)	30, 51, 62, 324
FspBI	CTAG	3 cut(s)	300, 342, 545
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	4 cut(s)	30, 51, 62, 324
HaeII	RGCGCY	1 cut(s)	67
HapII	CCGG	2 cut(s)	208, 531
HhaI	GCGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	2 cut(s)	92, 734
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HinfI	GANTC	4 cut(s)	34, 204, 277, 593
HpaII	CCGG	2 cut(s)	208, 531
Hpy166II	GTNNAC	2 cut(s)	509, 542
Hpy188I	TCNGA	2 cut(s)	517, 601
Hpy188III	TCNNGA	2 cut(s)	8, 731
Hpy8I	GTNNAC	2 cut(s)	509, 542
Hpy99I	CGWCG	1 cut(s)	555
HpyAV	CCTTC	4 cut(s)	70, 74, 247, 585
HpyCH4III	ACNGT	2 cut(s)	135, 151
HpyCH4IV	ACGT	2 cut(s)	505, 550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 208, 217
HpyF3I	CTNAG	3 cut(s)	72, 140, 516
HpySE526I	ACGT	2 cut(s)	505, 550
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	92, 734
HspAI	GCGC	1 cut(s)	64
KasI	GGCGCC	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	4, 256, 626
LmnI	GCTCC	2 cut(s)	607, 648
Lsp1109I	GCAGC	3 cut(s)	16, 62, 310
MaeI	CTAG	3 cut(s)	300, 342, 545
MaeII	ACGT	2 cut(s)	505, 550
MaeIII	GTNAC	2 cut(s)	269, 290
MalI	GATC	3 cut(s)	6, 258, 628
MbiI	CCGCTC	1 cut(s)	688
MboI	GATC	3 cut(s)	4, 256, 626
MboII	GAAGA	8 cut(s)	89, 407, 437, 588, 614, 633, 634, 722
MflI	RGATCY	2 cut(s)	4, 256
MhlI	GDGCHC	1 cut(s)	653
MluCI	AATT	4 cut(s)	56, 127, 224, 428
Mly113I	GGCGCC	1 cut(s)	64
MnlI	CCTC	7 cut(s)	149, 309, 452, 468, 511, 598, 696
MseI	TTAA	4 cut(s)	120, 240, 407, 736
MspI	CCGG	2 cut(s)	208, 531
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	176, 208, 217
NarI	GGCGCC	1 cut(s)	64
NdeII	GATC	3 cut(s)	4, 256, 626
NlaIII	CATG	2 cut(s)	92, 734
NlaIV	GGNNCC	4 cut(s)	65, 137, 258, 535
NmuCI	GTSAC	1 cut(s)	269
PagI	TCATGA	1 cut(s)	730
PfeI	GAWTC	4 cut(s)	34, 204, 277, 593
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	4 cut(s)	31, 52, 63, 325
PluTI	GGCGCC	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	653
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	4 cut(s)	65, 137, 258, 535
PspPI	GGNCC	3 cut(s)	491, 533, 563
PsuI	RGATCY	2 cut(s)	4, 256
SacI	GAGCTC	1 cut(s)	653
SaqAI	TTAA	4 cut(s)	120, 240, 407, 736
SatI	GCNGC	4 cut(s)	30, 51, 62, 324
Sau3AI	GATC	3 cut(s)	4, 256, 626
Sau96I	GGNCC	3 cut(s)	491, 533, 563
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	653
SfoI	GGCGCC	1 cut(s)	65
SinI	GGWCC	3 cut(s)	491, 533, 563
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	4 cut(s)	56, 127, 224, 428
SsiI	CCGC	2 cut(s)	61, 688
SspDI	GGCGCC	1 cut(s)	63
SspMI	CTAG	3 cut(s)	300, 342, 545
SstI	GAGCTC	1 cut(s)	653
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	669
TaaI	ACNGT	2 cut(s)	135, 151
TaiI	ACGT	2 cut(s)	508, 553
TaqI	TCGA	2 cut(s)	473, 629
TasI	AATT	4 cut(s)	56, 127, 224, 428
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	4 cut(s)	34, 204, 277, 593
Tru1I	TTAA	4 cut(s)	120, 240, 407, 736
Tru9I	TTAA	4 cut(s)	120, 240, 407, 736
TscAI	CASTG	2 cut(s)	148, 301
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	3 cut(s)	29, 50, 323
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	5 cut(s)	207, 246, 266, 345, 498
TspRI	CASTG	2 cut(s)	148, 301
VpaK11BI	GGWCC	3 cut(s)	491, 533, 563
XapI	RAATTY	2 cut(s)	127, 428
XmiI	GTMKAC	1 cut(s)	541
XspI	CTAG	3 cut(s)	300, 342, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.