Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007110

Physical Location & Seq

Genomic Coordinates Reverse (-)

70816005 .. 70818493

Gene Structure 2489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0522700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGGCTCAAGTTCGGCTCTCGGCTCAATCCAAAGCCTACTCATCTCAGACTCAGAAGTCAGAAGTCGGAACCAGAAGGAGTGTTGGACTAGTGTGAAGAATCAGACAGAAATGGCGGACCAAAAGAAACAGATGCGACTCCCAAACCTCCCCACGGAGGTCATACGCGAGATTCTTGGGTGGCTTCCCGTGAAATCCCTATGCCGATTCAGGTGTGTATCAAACACATGGCTCTCTCTAATCTCTGAATCCCACTTTGTGAATTCCCACTTCAACAAAGCCTTTGAGCATGAACATGTATTCCACCAAAGACGAAGAGTCCTCATTAGAGATGCTTGGCTATGCCGCCTTTTCAGTCTGAACCTTGATGAGTGTCTCAATCACGTAAATATTGACGATGTTGGTGATGATGTTTTAGTTGTACCCACTCAACTCAAGCGTCGTAGATTTACTAAGTTCGTGTTTTACTGCAATGGGTTGTTGCTGTTGAAGTCGTATTATGTGTTTTATTTGTTAAACCCTGCAACCAAGGAAACCAAGATAGTACCAAACCCACCAGAGCTATATATGTGGTCTAATGAGCTGTATGGGTTTGGATTTGATCTGTCCAGTCTAGATTACAAGGTGGTTCAGGGCGAGTTCTTTGAATTTGATCTTGGGTTTAGTGTTTATTCATTGAAAACCGGGTCTTGGCGAGCGATTGAGAAGCGATATCCATATGAAAGTTTACAACCTGGTATGCAGGGGAGACTGCTGAATGGGAGTATTCACTGGTTGGTTTGTAGAAACTACAATGATGTGCCATCCATGGTTCTCTTGTCTTTTGTTTTAGCAGACGAGGAAGTGCAAGAGATTCCACTACCGCCTGATTTCCTTGTTGATTTCAACATTGAAGATGAAACGTATTTTCTCGACGTGTTCCAGGAATGCCTGTGTGTGGGAAAGAATGATGCTTTTGAGTTTTGGGTCATGAAGGAATACGGAGTGATGAAATCTTGGACTAAAATAAGCATCTCCTTTCCATGTACTGAAGGGCTACATTCTGGTTTCATGAAGAAAAATCATCATCTGTTGCTGGATTTGCACCAACACCGTCTGGTCATGTACAATTTTGATGATGGAAGCTCTCGAAATCTTTCAGTTGGGAAAAGTTCCAAAGTTGATTTTGTTGGGTGCTACTTGGAGAGCCTCGTCTCGCCTAATCACTATCATATGACTGATGGAGAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

410

Amino Acids

47.72

Weight (kDa)

6.02

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	47 - 86	7.6e-11	F-box domain
F-box-like	PF12937	48 - 84	3.7e-07	F-box-like
FBA_3	PF08268	148 - 342	8.8e-13	F-box associated beta propeller domain
FBA_1	PF07734	152 - 399	5e-21	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33690
fragaria_vesca	FvH4_2g02710 FvH4_2g02710 FvH4_2g02710
malus_domestica	MD05G1110900.v1.1 MD10G1114400.v1.1
prunus_persica	Prupe.8G155900_v2.0.a1 Prupe.8G155900_v2.0.a1
pyrus_communis	pycom10g09880
rosa_chinensis	RchiOBHm_Chr6g0247131
rosa_laevigata	RLG00000015218 RLG00000030364
rosa_multiflora	Rmu_sc0004577.1_g000013
rosa_roxburghii	Rroxscaffold_7G00214320
rosa_rugosa	Rorug05G0522700 Rorug05G0522700 Rorug05G0522700 Rorug05G0522800 Rorug05G0522900 Rorug05G0522900
rosa_samantha	Rh6AG037900 Rh6BG032800 Rh6CG033600 Rh6DG031300
rosa_wichuraiana	Rw6G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AccII	CGCG	1 cut(s)	168
AciI	CCGC	3 cut(s)	116, 346, 863
AcsI	RAATTY	2 cut(s)	262, 647
AcuI	CTGAAG	1 cut(s)	1050
AdeI	CACNNNGTG	1 cut(s)	259
AfaI	GTAC	4 cut(s)	423, 546, 1027, 1106
AfiI	CCNNNNNNNGG	4 cut(s)	154, 157, 690, 937
AflIII	ACRYGT	2 cut(s)	295, 915
AgsI	TTSAA	6 cut(s)	274, 490, 647, 679, 886, 893
AhdI	GACNNNNNGTC	1 cut(s)	317
AhlI	ACTAGT	1 cut(s)	89
AjiI	CACGTC	1 cut(s)	916
AjnI	CCWGG	2 cut(s)	733, 921
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AloI	GAACNNNNNNTCC	2 cut(s)	285, 317
AluBI	AGCT	3 cut(s)	562, 583, 1125
AluI	AGCT	3 cut(s)	562, 583, 1125
Alw26I	GTCTC	3 cut(s)	380, 742, 1198
ApoI	RAATTY	2 cut(s)	262, 647
Asp700I	GAANNNNTTC	1 cut(s)	1135
AspS9I	GGNCC	1 cut(s)	118
AsuC2I	CCSGG	1 cut(s)	685
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	8
BccI	CCATC	3 cut(s)	811, 1112, 1214
BciT130I	CCWGG	2 cut(s)	735, 923
BcnI	CCSGG	1 cut(s)	685
BcoDI	GTCTC	3 cut(s)	380, 742, 1198
BcuI	ACTAGT	1 cut(s)	89
BfaI	CTAG	2 cut(s)	90, 614
BisI	GCNGC	1 cut(s)	346
BlsI	GCNGC	1 cut(s)	347
Bme1390I	CCNGG	3 cut(s)	685, 735, 923
Bme18I	GGWCC	1 cut(s)	118
BmeRI	GACNNNNNGTC	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	916
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	3 cut(s)	685, 735, 923
BmsI	GCATC	4 cut(s)	123, 322, 940, 1020
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	685
BsaAI	YACGTR	1 cut(s)	385
BsaJI	CCNNGG	3 cut(s)	153, 528, 807
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 157, 690, 937
Bse1I	ACTGG	2 cut(s)	609, 776
Bse3DI	GCAATG	1 cut(s)	478
BseBI	CCWGG	2 cut(s)	735, 923
BseDI	CCNNGG	3 cut(s)	153, 528, 807
BseGI	GGATG	1 cut(s)	803
BseLI	CCNNNNNNNGG	4 cut(s)	154, 157, 690, 937
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	2 cut(s)	60, 66
BseNI	ACTGG	2 cut(s)	609, 776
Bsh1236I	CGCG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	684
BslI	CCNNNNNNNGG	4 cut(s)	154, 157, 690, 937
BsmAI	GTCTC	3 cut(s)	380, 742, 1198
BsmBI	CGTCTC	1 cut(s)	1198
BsmI	GAATGC	1 cut(s)	932
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	1104
Bsp143I	GATC	2 cut(s)	601, 652
Bsp19I	CCATGG	1 cut(s)	807
BspACI	CCGC	3 cut(s)	116, 346, 863
BspCNI	CTCAG	2 cut(s)	59, 65
BspFNI	CGCG	1 cut(s)	168
BspHI	TCATGA	2 cut(s)	969, 1050
BspLI	GGNNCC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	478
BsrGI	TGTACA	1 cut(s)	1104
BsrI	ACTGG	2 cut(s)	609, 776
BssECI	CCNNGG	3 cut(s)	153, 528, 807
BssMI	GATC	2 cut(s)	601, 652
BssT1I	CCWWGG	2 cut(s)	528, 807
Bst2UI	CCWGG	2 cut(s)	735, 923
Bst4CI	ACNGT	1 cut(s)	1094
Bst6I	CTCTTC	1 cut(s)	310
BstAUI	TGTACA	1 cut(s)	1104
BstBAI	YACGTR	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	696
BstDEI	CTNAG	3 cut(s)	46, 52, 453
BstDSI	CCRYGG	2 cut(s)	153, 807
BstF5I	GGATG	1 cut(s)	803
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	2 cut(s)	604, 655
BstMAI	GTCTC	3 cut(s)	380, 742, 1198
BstMBI	GATC	2 cut(s)	601, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	1081
BstNI	CCWGG	2 cut(s)	735, 923
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	3 cut(s)	683, 733, 921
BstUI	CGCG	1 cut(s)	168
BtgI	CCRYGG	2 cut(s)	153, 807
BtrI	CACGTC	1 cut(s)	916
BtsCI	GGATG	1 cut(s)	803
BtsIMutI	CAGTG	1 cut(s)	769
Cac8I	GCNNGC	1 cut(s)	696
CciI	TCATGA	2 cut(s)	969, 1050
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	428
CsiI	ACCWGGT	1 cut(s)	733
Csp6I	GTAC	4 cut(s)	422, 545, 1026, 1105
CviAII	CATG	8 cut(s)	228, 290, 296, 808, 970, 1023, 1051, 1102
CviQI	GTAC	4 cut(s)	422, 545, 1026, 1105
DdeI	CTNAG	3 cut(s)	46, 52, 453
DpnI	GATC	2 cut(s)	603, 654
DpnII	GATC	2 cut(s)	601, 652
DraIII	CACNNNGTG	1 cut(s)	259
DrdI	GACNNNNNNGTC	1 cut(s)	56
DriI	GACNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	310
Eam1105I	GACNNNNNGTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	310
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	2 cut(s)	528, 807
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	713
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	1050
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	733, 921
EcoRV	GATATC	1 cut(s)	713
EcoT14I	CCWWGG	2 cut(s)	528, 807
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	528, 807
Esp3I	CGTCTC	1 cut(s)	1198
FaeI	CATG	8 cut(s)	231, 293, 299, 811, 973, 1026, 1054, 1105
FatI	CATG	8 cut(s)	227, 289, 295, 807, 969, 1022, 1050, 1101
FauNDI	CATATG	2 cut(s)	718, 1212
Fnu4HI	GCNGC	1 cut(s)	346
FokI	GGATG	1 cut(s)	790
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	346
FspBI	CTAG	2 cut(s)	90, 614
GluI	GCNGC	1 cut(s)	346
HapII	CCGG	1 cut(s)	684
HgaI	GACGC	1 cut(s)	428
Hin1II	CATG	8 cut(s)	231, 293, 299, 811, 973, 1026, 1054, 1105
HinfI	GANTC	8 cut(s)	50, 100, 138, 172, 207, 248, 318, 853
HpaII	CCGG	1 cut(s)	684
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	728
Hpy188I	TCNGA	7 cut(s)	49, 55, 62, 69, 105, 247, 360
Hpy188III	TCNNGA	5 cut(s)	614, 911, 970, 1051, 1128
Hpy8I	GTNNAC	1 cut(s)	728
Hpy99I	CGWCG	2 cut(s)	444, 917
HpyAV	CCTTC	3 cut(s)	70, 967, 1025
HpyCH4III	ACNGT	1 cut(s)	1094
HpyCH4IV	ACGT	3 cut(s)	384, 902, 915
HpyCH4V	TGCA	5 cut(s)	471, 524, 742, 847, 1084
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1081
HpyF3I	CTNAG	3 cut(s)	46, 52, 453
HpySE526I	ACGT	3 cut(s)	384, 902, 915
Hsp92II	CATG	8 cut(s)	231, 293, 299, 811, 973, 1026, 1054, 1105
Kzo9I	GATC	2 cut(s)	601, 652
LweI	GCATC	4 cut(s)	123, 322, 940, 1020
MabI	ACCWGGT	1 cut(s)	733
MaeI	CTAG	2 cut(s)	90, 614
MaeII	ACGT	3 cut(s)	384, 902, 915
MalI	GATC	2 cut(s)	603, 654
MboI	GATC	2 cut(s)	601, 652
MboII	GAAGA	4 cut(s)	109, 327, 905, 1066
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	262, 647, 1108
MlyI	GAGTC	3 cut(s)	44, 132, 327
MmeI	TCCRAC	2 cut(s)	47, 65
MnlI	CCTC	5 cut(s)	151, 158, 332, 832, 1199
MroXI	GAANNNNTTC	1 cut(s)	1135
MseI	TTAA	2 cut(s)	515, 1231
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	1 cut(s)	684
MspR9I	CCNGG	3 cut(s)	685, 735, 923
Mva1269I	GAATGC	1 cut(s)	932
MvaI	CCWGG	2 cut(s)	735, 923
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	1081
NciI	CCSGG	1 cut(s)	685
NcoI	CCATGG	1 cut(s)	807
NdeI	CATATG	2 cut(s)	718, 1212
NdeII	GATC	2 cut(s)	601, 652
NlaIII	CATG	8 cut(s)	231, 293, 299, 811, 973, 1026, 1054, 1105
NlaIV	GGNNCC	1 cut(s)	71
NspI	RCATGY	1 cut(s)	299
PagI	TCATGA	2 cut(s)	969, 1050
PciI	ACATGT	1 cut(s)	295
PctI	GAATGC	1 cut(s)	932
PdmI	GAANNNNTTC	1 cut(s)	1135
PfeI	GAWTC	5 cut(s)	100, 172, 207, 248, 853
PfoI	TCCNGGA	1 cut(s)	921
PkrI	GCNGC	1 cut(s)	347
PleI	GAGTC	3 cut(s)	44, 132, 326
PpsI	GAGTC	3 cut(s)	44, 132, 326
Ppu21I	YACGTR	1 cut(s)	385
PscI	ACATGT	1 cut(s)	295
Psp6I	CCWGG	2 cut(s)	733, 921
PspGI	CCWGG	2 cut(s)	733, 921
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	118
RsaI	GTAC	4 cut(s)	423, 546, 1027, 1106
RsaNI	GTAC	4 cut(s)	422, 545, 1026, 1105
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	515, 1231
SatI	GCNGC	1 cut(s)	346
Sau3AI	GATC	2 cut(s)	601, 652
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	3 cut(s)	44, 132, 327
ScrFI	CCNGG	3 cut(s)	685, 735, 923
SduI	GDGCHC	1 cut(s)	8
SexAI	ACCWGGT	1 cut(s)	733
SfaNI	GCATC	4 cut(s)	123, 322, 940, 1020
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	2 cut(s)	7, 434
SmoI	CTYRAG	2 cut(s)	7, 434
SpeI	ACTAGT	1 cut(s)	89
Sse9I	AATT	3 cut(s)	262, 647, 1108
SsiI	CCGC	3 cut(s)	116, 346, 863
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	2 cut(s)	90, 614
StyD4I	CCNGG	3 cut(s)	683, 733, 921
StyI	CCWWGG	2 cut(s)	528, 807
TaaI	ACNGT	1 cut(s)	1094
TaiI	ACGT	3 cut(s)	387, 905, 918
TaqI	TCGA	2 cut(s)	912, 1129
TasI	AATT	3 cut(s)	262, 647, 1108
TatI	WGTACW	2 cut(s)	1025, 1104
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	5 cut(s)	100, 172, 207, 248, 853
Tru1I	TTAA	2 cut(s)	515, 1231
Tru9I	TTAA	2 cut(s)	515, 1231
TscAI	CASTG	1 cut(s)	776
TspDTI	ATGAA	8 cut(s)	306, 663, 735, 912, 986, 1004, 1039, 1067
TspGWI	ACGGA	2 cut(s)	170, 996
TspRI	CASTG	1 cut(s)	776
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	2 cut(s)	262, 647
XbaI	TCTAGA	1 cut(s)	613
XceI	RCATGY	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	1135
XspI	CTAG	2 cut(s)	90, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.