Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007110

Physical Location & Seq

Genomic Coordinates Reverse (-)

22810203 .. 22813600

Gene Structure 3398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1110900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGATCTTGAAACAGAGAACAGAATAGCTTCAATTCTTATGAGAGAAGCCGCTGAATTGCGGCGTCAAGCTGAGAAGGAAGGTGTGCATGCTTATCTTCAACAACCTAAAACAAGATTTCGGCCAAATTCACGGTTCCTCAGTGCTACTGTTCGTGGCGTGCAACAAGCAAATCGAGTTGTTGAAGTGAATGAGATGTGGCGACTCCGGCAGAAAGAGAGAGAATTGGACAATAGGCTTAAGGGGAAGAAGGATGAGAGCAGAAATGACAGGAGTCAGAGAGACAGTAACTCTCCAAGAAGCAGCGGTAAGGGACGTGCTGTCCCAGATGATAGTGCTGGTCCTTCTTGCTCGTCAAGGAAAAGAGAATATGAGAGCTGTCATTCAAGGCAAGAGAATGGTTTAAGGGATGAAGAACTTGAAGAATTTTTACATTCAAGAATCAAGCGTGGCAGAGGTGCTGTTGGGTCAAGGATGGACGAAACAGGCCCTTATCTTCCCCGTTGTTCAGACTCCAAGGAAGCGCTGCCACAGAGCCCCAGTGTACAAGAACGCCGTGTGTATGGACCAGAGAGGCCTTCACATAAATTATGTTATTCTTCTGAAGAGGAGCTCGACAATGAGAGGAAGAAATATAAAAAGGTGAAGTCTGGTAGCTCTAACAAGCACAAATCCAAGGAAAAATCTAAAGAGAAGAAGAAAAAGAGGAAGGACGAGAAGAAGAAGAGGAAGGACGAGAAAAGAAGTAAATGCCATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

29.53

Weight (kDa)

9.92

Isoelectric Point (pI)

68.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33690
fragaria_vesca	FvH4_2g02710 FvH4_2g02710 FvH4_2g02710
malus_domestica	MD05G1110900.v1.1 MD10G1114400.v1.1
prunus_persica	Prupe.8G155900_v2.0.a1 Prupe.8G155900_v2.0.a1
pyrus_communis	pycom10g09880
rosa_chinensis	RchiOBHm_Chr6g0247131
rosa_laevigata	RLG00000015218 RLG00000030364
rosa_multiflora	Rmu_sc0004577.1_g000013
rosa_roxburghii	Rroxscaffold_7G00214320
rosa_rugosa	Rorug05G0522700 Rorug05G0522700 Rorug05G0522700 Rorug05G0522800 Rorug05G0522900 Rorug05G0522900
rosa_samantha	Rh6AG037900 Rh6BG032800 Rh6CG033600 Rh6DG031300
rosa_wichuraiana	Rw6G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	51, 61, 306
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	122
AcsI	RAATTY	2 cut(s)	127, 425
AcuI	CTGAAG	1 cut(s)	624
AcyI	GRCGYC	1 cut(s)	64
AfaI	GTAC	1 cut(s)	546
AfeI	AGCGCT	1 cut(s)	525
AflII	CTTAAG	1 cut(s)	239
AgsI	TTSAA	7 cut(s)	11, 33, 101, 185, 387, 422, 438
AhdI	GACNNNNNGTC	1 cut(s)	320
AjiI	CACGTC	1 cut(s)	317
AluBI	AGCT	5 cut(s)	29, 71, 378, 613, 657
AluI	AGCT	5 cut(s)	29, 71, 378, 613, 657
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	525
AoxI	GGCC	3 cut(s)	122, 487, 575
ApeKI	GCWGC	2 cut(s)	303, 526
ApoI	RAATTY	2 cut(s)	127, 425
Asp700I	GAANNNNTTC	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	3 cut(s)	341, 488, 566
AsuHPI	GGTGA	1 cut(s)	655
AvaII	GGWCC	2 cut(s)	341, 566
BanII	GRGCYC	2 cut(s)	539, 615
BarI	GAAGNNNNNNTAC	2 cut(s)	414, 446
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	2 cut(s)	315, 513
BccI	CCATC	1 cut(s)	469
BceAI	ACGGC	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	527
BfrI	CTTAAG	1 cut(s)	239
BisI	GCNGC	4 cut(s)	51, 62, 304, 527
BlsI	GCNGC	4 cut(s)	52, 63, 305, 528
Bme18I	GGWCC	2 cut(s)	341, 566
BmeRI	GACNNNNNGTC	1 cut(s)	320
BmgBI	CACGTC	1 cut(s)	317
BmgT120I	GGNCC	3 cut(s)	341, 488, 566
BmiI	GGNNCC	1 cut(s)	137
BmrI	ACTGGG	1 cut(s)	534
BmuI	ACTGGG	1 cut(s)	534
BoxI	GACNNNNGTC	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	516, 675
Bse1I	ACTGG	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	516, 675
BseGI	GGATG	3 cut(s)	259, 415, 480
BseMII	CTCAG	2 cut(s)	63, 154
BseNI	ACTGG	1 cut(s)	540
BseRI	GAGGAG	1 cut(s)	623
BseXI	GCAGC	2 cut(s)	315, 513
BshFI	GGCC	3 cut(s)	124, 489, 577
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	1 cut(s)	208
BslFI	GGGAC	2 cut(s)	308, 327
BsmAI	GTCTC	1 cut(s)	276
BsmFI	GGGAC	2 cut(s)	308, 327
BsnI	GGCC	3 cut(s)	124, 489, 577
Bsp1286I	GDGCHC	2 cut(s)	539, 615
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	3 cut(s)	51, 61, 306
BspANI	GGCC	3 cut(s)	124, 489, 577
BspCNI	CTCAG	2 cut(s)	64, 153
BspLI	GGNNCC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	540
BssECI	CCNNGG	2 cut(s)	516, 675
BssMI	GATC	1 cut(s)	4
BssNI	GRCGYC	1 cut(s)	64
BssT1I	CCWWGG	2 cut(s)	516, 675
Bst4CI	ACNGT	3 cut(s)	135, 151, 287
Bst6I	CTCTTC	2 cut(s)	600, 719
BstACI	GRCGYC	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	544
BstC8I	GCNNGC	2 cut(s)	90, 161
BstDEI	CTNAG	2 cut(s)	72, 140
BstF5I	GGATG	3 cut(s)	259, 415, 480
BstH2I	RGCGCY	1 cut(s)	527
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	92
BstPAI	GACNNNNGTC	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	315, 513
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	124, 489, 577
BtrI	CACGTC	1 cut(s)	317
BtsCI	GGATG	3 cut(s)	259, 415, 480
BtsIMutI	CAGTG	2 cut(s)	148, 547
Cac8I	GCNNGC	2 cut(s)	90, 161
CfoI	GCGC	1 cut(s)	526
Cfr13I	GGNCC	3 cut(s)	341, 488, 566
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	545
CviAII	CATG	1 cut(s)	89
CviQI	GTAC	1 cut(s)	545
DdeI	CTNAG	2 cut(s)	72, 140
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DriI	GACNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	122
Eam1104I	CTCTTC	2 cut(s)	600, 719
Eam1105I	GACNNNNNGTC	1 cut(s)	320
EarI	CTCTTC	2 cut(s)	600, 719
Ecl136II	GAGCTC	1 cut(s)	613
Eco130I	CCWWGG	2 cut(s)	516, 675
Eco147I	AGGCCT	1 cut(s)	577
Eco24I	GRGCYC	2 cut(s)	539, 615
Eco47I	GGWCC	2 cut(s)	341, 566
Eco47III	AGCGCT	1 cut(s)	525
Eco53kI	GAGCTC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	624
EcoICRI	GAGCTC	1 cut(s)	613
EcoO109I	RGGNCCY	1 cut(s)	488
EcoT14I	CCWWGG	2 cut(s)	516, 675
EcoT38I	GRGCYC	2 cut(s)	539, 615
ErhI	CCWWGG	2 cut(s)	516, 675
FaeI	CATG	1 cut(s)	92
FaiI	YATR	8 cut(s)	41, 90, 372, 564, 585, 592, 636, 756
FaqI	GGGAC	2 cut(s)	308, 327
FatI	CATG	1 cut(s)	88
Fnu4HI	GCNGC	4 cut(s)	51, 62, 304, 527
FokI	GGATG	3 cut(s)	266, 422, 487
FriOI	GRGCYC	2 cut(s)	539, 615
Fsp4HI	GCNGC	4 cut(s)	51, 62, 304, 527
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	4 cut(s)	51, 62, 304, 527
HaeII	RGCGCY	1 cut(s)	527
HaeIII	GGCC	3 cut(s)	124, 489, 577
HapII	CCGG	1 cut(s)	208
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	526
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HinfI	GANTC	4 cut(s)	204, 274, 441, 512
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	1 cut(s)	545
Hpy188I	TCNGA	3 cut(s)	279, 511, 604
Hpy188III	TCNNGA	2 cut(s)	8, 438
Hpy8I	GTNNAC	1 cut(s)	545
HpyAV	CCTTC	7 cut(s)	70, 74, 244, 354, 588, 703, 724
HpyCH4III	ACNGT	3 cut(s)	135, 151, 287
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	2 cut(s)	88, 163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	2 cut(s)	72, 140
HpySE526I	ACGT	1 cut(s)	316
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	1 cut(s)	92
HspAI	GCGC	1 cut(s)	524
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	610
LpnPI	CCDG	8 cut(s)	221, 256, 324, 339, 471, 553, 582, 636
Lsp1109I	GCAGC	2 cut(s)	315, 513
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	539, 615
MluCI	AATT	6 cut(s)	33, 56, 127, 224, 425, 587
MlyI	GAGTC	3 cut(s)	198, 283, 506
MnlI	CCTC	7 cut(s)	149, 449, 567, 601, 618, 699, 720
MroXI	GAANNNNTTC	1 cut(s)	28
MseI	TTAA	3 cut(s)	240, 404, 760
MspA1I	CMGCKG	2 cut(s)	53, 306
MspCI	CTTAAG	1 cut(s)	239
MspI	CCGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	208
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	137
NspI	RCATGY	1 cut(s)	92
PaeI	GCATGC	1 cut(s)	92
PceI	AGGCCT	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	441
PkrI	GCNGC	4 cut(s)	52, 63, 305, 528
PleI	GAGTC	3 cut(s)	198, 282, 506
PpsI	GAGTC	3 cut(s)	198, 282, 506
PshAI	GACNNNNGTC	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	615
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	3 cut(s)	341, 488, 566
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	546
RsaNI	GTAC	1 cut(s)	545
SacI	GAGCTC	1 cut(s)	615
SaqAI	TTAA	3 cut(s)	240, 404, 760
SatI	GCNGC	4 cut(s)	51, 62, 304, 527
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	3 cut(s)	341, 488, 566
SchI	GAGTC	3 cut(s)	198, 283, 506
SduI	GDGCHC	2 cut(s)	539, 615
SinI	GGWCC	2 cut(s)	341, 566
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SphI	GCATGC	1 cut(s)	92
Sse9I	AATT	6 cut(s)	33, 56, 127, 224, 425, 587
SseBI	AGGCCT	1 cut(s)	577
SsiI	CCGC	3 cut(s)	51, 61, 306
SstI	GAGCTC	1 cut(s)	615
StuI	AGGCCT	1 cut(s)	577
StyI	CCWWGG	2 cut(s)	516, 675
TaaI	ACNGT	3 cut(s)	135, 151, 287
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	175, 615
TasI	AATT	6 cut(s)	33, 56, 127, 224, 425, 587
TatI	WGTACW	1 cut(s)	544
TauI	GCSGC	2 cut(s)	53, 64
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	3 cut(s)	240, 404, 760
Tru9I	TTAA	3 cut(s)	240, 404, 760
TscAI	CASTG	2 cut(s)	148, 547
TseI	GCWGC	2 cut(s)	303, 526
TspDTI	ATGAA	1 cut(s)	426
TspRI	CASTG	2 cut(s)	148, 547
Vha464I	CTTAAG	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	341, 566
XapI	RAATTY	2 cut(s)	127, 425
XceI	RCATGY	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.