Rh6BG032800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0007110
Physical Location & Seq
Forward (+)
4913476 .. 4916914
3439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG032800.1

Sequence Viewer

Length: 738 bp
ATGGATCTTGAGACAGAGAATAGAATAGCTGCAATTCTTATGAGAGAAGCAGCAGAATTGCGGCGCCAAGCTGAGAAGGAAGGTGTGCATGCTTATCTTCAACAACCTAAAGCAAGATTTAGGCCAAATTCACGGTTCCTCAATGCTACTGTTCGTGGTGTTGAACAAGCAAATAAAGCTGTGGAAGTGAATGAAATGTGGCGTATCCGGCAGAAAGAGCTCGAATTGGATGAAAGGCTTAAAGGCAAGATGAAGGATGAGAGCAGAAATGACAGGAATCCTGGAGATGGCAACACTCCGAGAAGCACTAGCAAGAGGCACGCTTCCATGGAGGATAATGTTAGTGCTACTTGTTCATCAGGTCAGGGAGTATATGAGAGATGCCATTCAAGGGAAGAGAATGGATTAAGAGACGAAGAACTTGAAGAATTTTTACATTCAAGGGTCAAGCGTGGCAGAGGAGCTGTTGGGTCAAGGATGGATGAAACAGGTCCATATCTTCCACGTTCGGACTCTGAGGAACAGATAGCTGGTCCCAGTGTACAAGAACGTCGTGTTTATGGACCAGAGAAGCCTTCACAGAAGTTATGTGACTCTTCTGAAGAGGAGCTTCCCAACAGGAAGAGATCAAAAAAGGTTTCTTCTGGAAGCTCAAAGAAGCACAGATCCAAGGATAAGTCTAAAGAGCGGAAAAGGAAGAAGAGGAAAGAAGAGAAAAGAAGTAAATATTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

28.36

Weight (kDa)

9.64

Isoelectric Point (pI)

67.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 63
AccBSI CCGCTC 1 cut(s) 688
AciI CCGC 2 cut(s) 61, 688
AclWI GGATC 2 cut(s) 12, 660
AcsI RAATTY 2 cut(s) 127, 428
AcuI CTGAAG 1 cut(s) 621
AcyI GRCGYC 1 cut(s) 64
AfaI GTAC 1 cut(s) 543
AfiI CCNNNNNNNGG 2 cut(s) 287, 391
AgsI TTSAA 5 cut(s) 101, 164, 390, 425, 441
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 8 cut(s) 29, 71, 179, 220, 464, 530, 610, 651
AluI AGCT 8 cut(s) 29, 71, 179, 220, 464, 530, 610, 651
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 5, 405
AlwI GGATC 2 cut(s) 12, 660
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 2 cut(s) 29, 50
ApoI RAATTY 2 cut(s) 127, 428
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 3 cut(s) 491, 533, 563
AvaII GGWCC 3 cut(s) 491, 533, 563
BanI GGYRCC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 222
BarI GAAGNNNNNNTAC 2 cut(s) 417, 449
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 16, 62
BccI CCATC 2 cut(s) 281, 472
BciT130I CCWGG 1 cut(s) 282
BciVI GTATCC 1 cut(s) 215
BcoDI GTCTC 2 cut(s) 5, 405
BfaI CTAG 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 67
BfuI GTATCC 1 cut(s) 215
BisI GCNGC 3 cut(s) 30, 51, 62
BlsI GCNGC 3 cut(s) 31, 52, 63
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 3 cut(s) 491, 533, 563
BmgT120I GGNCC 3 cut(s) 491, 533, 563
BmiI GGNNCC 3 cut(s) 65, 137, 535
BmrFI CCNGG 1 cut(s) 282
BmrI ACTGGG 1 cut(s) 531
BmsI GCATC 1 cut(s) 371
BmuI ACTGGG 1 cut(s) 531
BpmI CTGGAG 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 327, 669
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 391
Bse1I ACTGG 1 cut(s) 537
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 327, 669
BseGI GGATG 4 cut(s) 235, 262, 483, 487
BseLI CCNNNNNNNGG 2 cut(s) 287, 391
BseMII CTCAG 2 cut(s) 63, 507
BseNI ACTGG 1 cut(s) 537
BseRI GAGGAG 2 cut(s) 474, 620
BseXI GCAGC 2 cut(s) 16, 62
BshFI GGCC 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 208
BslFI GGGAC 1 cut(s) 519
BslI CCNNNNNNNGG 2 cut(s) 287, 391
BsmAI GTCTC 2 cut(s) 5, 405
BsmBI CGTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 519
BsnI GGCC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 222
Bsp1407I TGTACA 1 cut(s) 541
Bsp143I GATC 3 cut(s) 4, 626, 665
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 2 cut(s) 61, 688
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 2 cut(s) 64, 508
BspLI GGNNCC 3 cut(s) 65, 137, 535
BspPI GGATC 2 cut(s) 12, 660
BspT107I GGYRCC 1 cut(s) 63
BsrBI CCGCTC 1 cut(s) 688
BsrGI TGTACA 1 cut(s) 541
BsrI ACTGG 1 cut(s) 537
BssECI CCNNGG 2 cut(s) 327, 669
BssMI GATC 3 cut(s) 4, 626, 665
BssNI GRCGYC 1 cut(s) 64
BssT1I CCWWGG 2 cut(s) 327, 669
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 135, 151
Bst6I CTCTTC 6 cut(s) 390, 597, 601, 617, 695, 705
BstACI GRCGYC 1 cut(s) 64
BstAUI TGTACA 1 cut(s) 541
BstC8I GCNNGC 2 cut(s) 90, 321
BstDEI CTNAG 2 cut(s) 72, 516
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 4 cut(s) 235, 262, 483, 487
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 3 cut(s) 7, 629, 668
BstMAI GTCTC 2 cut(s) 5, 405
BstMBI GATC 3 cut(s) 4, 626, 665
BstMWI GCNNNNNNNGC 3 cut(s) 176, 208, 217
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 280
BstV1I GCAGC 2 cut(s) 16, 62
BstX2I RGATCY 2 cut(s) 4, 665
BstYI RGATCY 2 cut(s) 4, 665
BsuI GTATCC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 327
BtsCI GGATG 4 cut(s) 235, 262, 483, 487
BtsIMutI CAGTG 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 90, 321
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 3 cut(s) 491, 533, 563
Csp6I GTAC 1 cut(s) 542
CviAII CATG 2 cut(s) 89, 328
CviQI GTAC 1 cut(s) 542
DdeI CTNAG 2 cut(s) 72, 516
DinI GGCGCC 1 cut(s) 65
DpnI GATC 3 cut(s) 6, 628, 667
DpnII GATC 3 cut(s) 4, 626, 665
Eam1104I CTCTTC 6 cut(s) 390, 597, 601, 617, 695, 705
EarI CTCTTC 6 cut(s) 390, 597, 601, 617, 695, 705
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 2 cut(s) 327, 669
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 3 cut(s) 491, 533, 563
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 621
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 327, 669
EcoT38I GRGCYC 1 cut(s) 222
EgeI GGCGCC 1 cut(s) 65
EheI GGCGCC 1 cut(s) 65
ErhI CCWWGG 2 cut(s) 327, 669
Esp3I CGTCTC 1 cut(s) 405
FaeI CATG 2 cut(s) 92, 331
FaiI YATR 9 cut(s) 41, 90, 329, 373, 375, 496, 561, 589, 732
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 1 cut(s) 519
FatI CATG 2 cut(s) 88, 327
Fnu4HI GCNGC 3 cut(s) 30, 51, 62
FokI GGATG 4 cut(s) 242, 269, 490, 494
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 3 cut(s) 30, 51, 62
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 65
GluI GCNGC 3 cut(s) 30, 51, 62
GsuI CTGGAG 1 cut(s) 303
HaeII RGCGCY 1 cut(s) 67
HaeIII GGCC 1 cut(s) 124
HapII CCGG 1 cut(s) 208
HhaI GCGC 1 cut(s) 66
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 2 cut(s) 92, 331
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 3 cut(s) 277, 512, 593
HpaII CCGG 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 542
Hpy188I TCNGA 4 cut(s) 300, 511, 517, 601
Hpy188III TCNNGA 2 cut(s) 8, 645
Hpy8I GTNNAC 1 cut(s) 542
Hpy99I CGWCG 1 cut(s) 555
HpyAV CCTTC 4 cut(s) 70, 74, 247, 585
HpyCH4III ACNGT 2 cut(s) 135, 151
HpyCH4IV ACGT 2 cut(s) 505, 550
HpyCH4V TGCA 2 cut(s) 32, 88
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 208, 217
HpyF3I CTNAG 2 cut(s) 72, 516
HpySE526I ACGT 2 cut(s) 505, 550
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 2 cut(s) 92, 331
HspAI GCGC 1 cut(s) 64
KasI GGCGCC 1 cut(s) 63
Kzo9I GATC 3 cut(s) 4, 626, 665
LmnI GCTCC 2 cut(s) 461, 607
Lsp1109I GCAGC 2 cut(s) 16, 62
LweI GCATC 1 cut(s) 371
MaeI CTAG 1 cut(s) 309
MaeII ACGT 2 cut(s) 505, 550
MaeIII GTNAC 1 cut(s) 590
MalI GATC 3 cut(s) 6, 628, 667
MbiI CCGCTC 1 cut(s) 688
MboI GATC 3 cut(s) 4, 626, 665
MflI RGATCY 2 cut(s) 4, 665
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 5 cut(s) 33, 56, 127, 224, 428
Mly113I GGCGCC 1 cut(s) 64
MlyI GAGTC 2 cut(s) 506, 587
MnlI CCTC 7 cut(s) 149, 309, 325, 452, 511, 598, 696
MseI TTAA 3 cut(s) 240, 407, 736
MspI CCGG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 176, 208, 217
NarI GGCGCC 1 cut(s) 64
NcoI CCATGG 1 cut(s) 327
NdeII GATC 3 cut(s) 4, 626, 665
NlaIII CATG 2 cut(s) 92, 331
NlaIV GGNNCC 3 cut(s) 65, 137, 535
NmuCI GTSAC 1 cut(s) 590
NspI RCATGY 1 cut(s) 92
PaeI GCATGC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 277
PfoI TCCNGGA 1 cut(s) 280
PkrI GCNGC 3 cut(s) 31, 52, 63
PleI GAGTC 2 cut(s) 506, 587
PluTI GGCGCC 1 cut(s) 67
PpsI GAGTC 2 cut(s) 506, 587
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 3 cut(s) 65, 137, 535
PspPI GGNCC 3 cut(s) 491, 533, 563
PsuI RGATCY 2 cut(s) 4, 665
RsaI GTAC 1 cut(s) 543
RsaNI GTAC 1 cut(s) 542
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 3 cut(s) 240, 407, 736
SatI GCNGC 3 cut(s) 30, 51, 62
Sau3AI GATC 3 cut(s) 4, 626, 665
Sau96I GGNCC 3 cut(s) 491, 533, 563
SchI GAGTC 2 cut(s) 506, 587
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 222
SfaNI GCATC 1 cut(s) 371
SfoI GGCGCC 1 cut(s) 65
SinI GGWCC 3 cut(s) 491, 533, 563
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SphI GCATGC 1 cut(s) 92
Sse9I AATT 5 cut(s) 33, 56, 127, 224, 428
SsiI CCGC 2 cut(s) 61, 688
SspDI GGCGCC 1 cut(s) 63
SspI AATATT 1 cut(s) 728
SspMI CTAG 1 cut(s) 309
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 2 cut(s) 327, 669
TaaI ACNGT 2 cut(s) 135, 151
TaiI ACGT 2 cut(s) 508, 553
TaqI TCGA 1 cut(s) 222
TasI AATT 5 cut(s) 33, 56, 127, 224, 428
TatI WGTACW 1 cut(s) 541
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 3 cut(s) 240, 407, 736
Tru9I TTAA 3 cut(s) 240, 407, 736
TscAI CASTG 1 cut(s) 544
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 2 cut(s) 29, 50
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 5 cut(s) 207, 246, 266, 345, 498
TspRI CASTG 1 cut(s) 544
VpaK11BI GGWCC 3 cut(s) 491, 533, 563
XapI RAATTY 2 cut(s) 127, 428
XceI RCATGY 1 cut(s) 92
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.