RLG00000030364

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007110
Physical Location & Seq
Forward (+)
60115493 .. 60117289
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030364

Sequence Viewer

Length: 828 bp
ATGCCCTCCTTTTGGGTAACCTTGTTGATCAAGTATTTATTGCTTCATTTACCTGGTTATCGTCCTAAGGAGGTCAGTTACCTGGTTCAGATGGATCTTGAGACAGAGAATAGAATAGCTGCAATTCTTATGAGAGAAGCAGCAGAATTGCGGCGCCAAGCTGAGAAGGAAGGTGTGCATGCTTATCTTCAACAACCTAAAGCAAGATTTAGGCCAAATTCACGGTTCCTCAGTGCTACTGTTCGTGGTGTTGAACTAGCAAATAAAGCTGTGGAAGTGAATGAAATGTGGCAAATCCGGCAGAAAGAGCTCGAATTGGATGAAAGGCCTAAAGGCAAGATGAAGGATGAGAGCAGAAATGACAGGAATCCTGGAGATGGCAACACTCTGAGAAGCACTAGCAAGAGGCACACTTCCATGGAGGATAATGTTAGTGCTACTTGTTCATCAAGCCAAAGAGTATATGAGAGGTGCCATTCAAGGGAGGAGAATGGATTAAGAGATGAAGAACTTGAAGAATTTTTACATTCAAGGGTCAAGCGTGACAGAGGAGCTGTTGGATCAAGGATGGATGAAACAGGTCCTTATCTTCCACGTTCAGACTCAGAGGAACAGATAGCTGGTCCCAGTGTACAAGACAGTCGTGTTTATGGACCAGAGAAGCCTTCACAGAAGTTATGTGATTCTTCTGAAGAGGAGCTTCCCAACAGGAAGAGATCAAAAAAGGTTTCTTCTGGAAGCTCAAAGAAGCACAAATCCAAGGATAAGTCTAAAGAGCGGAAAAAGAAGAAGAGGAAGGAAGAGAAAAGAAGTAAATATTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

31.96

Weight (kDa)

9.53

Isoelectric Point (pI)

62.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 153, 471
AccBSI CCGCTC 1 cut(s) 778
AciI CCGC 2 cut(s) 151, 778
AclWI GGATC 2 cut(s) 102, 568
AcsI RAATTY 2 cut(s) 217, 518
AcuI CTGAAG 1 cut(s) 711
AcyI GRCGYC 1 cut(s) 154
AfaI GTAC 1 cut(s) 633
AfiI CCNNNNNNNGG 3 cut(s) 12, 377, 481
AgsI TTSAA 5 cut(s) 191, 254, 480, 515, 531
AjnI CCWGG 3 cut(s) 52, 81, 370
AluBI AGCT 8 cut(s) 119, 161, 269, 310, 554, 620, 700, 741
AluI AGCT 8 cut(s) 119, 161, 269, 310, 554, 620, 700, 741
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 2 cut(s) 102, 568
AoxI GGCC 2 cut(s) 212, 326
ApeKI GCWGC 2 cut(s) 119, 140
ApoI RAATTY 2 cut(s) 217, 518
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 3 cut(s) 581, 623, 653
AvaII GGWCC 3 cut(s) 581, 623, 653
AxyI CCTNAGG 1 cut(s) 66
BanI GGYRCC 2 cut(s) 153, 471
BanII GRGCYC 1 cut(s) 312
BarI GAAGNNNNNNTAC 2 cut(s) 507, 539
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 106, 152
BccI CCATC 3 cut(s) 85, 371, 562
BciT130I CCWGG 3 cut(s) 54, 83, 372
BclI TGATCA 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 2 cut(s) 257, 399
BfoI RGCGCY 1 cut(s) 157
BisI GCNGC 3 cut(s) 120, 141, 152
BlsI GCNGC 3 cut(s) 121, 142, 153
Bme1390I CCNGG 3 cut(s) 54, 83, 372
Bme18I GGWCC 3 cut(s) 581, 623, 653
BmgT120I GGNCC 3 cut(s) 581, 623, 653
BmiI GGNNCC 4 cut(s) 155, 227, 473, 625
BmrFI CCNGG 3 cut(s) 54, 83, 372
BmrI ACTGGG 1 cut(s) 621
BmuI ACTGGG 1 cut(s) 621
BpmI CTGGAG 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 154
BsaJI CCNNGG 2 cut(s) 417, 759
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 377, 481
Bse1I ACTGG 1 cut(s) 627
Bse21I CCTNAGG 1 cut(s) 66
BseBI CCWGG 3 cut(s) 54, 83, 372
BseDI CCNNGG 2 cut(s) 417, 759
BseGI GGATG 4 cut(s) 325, 352, 573, 577
BseLI CCNNNNNNNGG 3 cut(s) 12, 377, 481
BseMII CTCAG 4 cut(s) 153, 244, 380, 618
BseNI ACTGG 1 cut(s) 627
BseRI GAGGAG 3 cut(s) 500, 564, 710
BseXI GCAGC 2 cut(s) 106, 152
BshFI GGCC 2 cut(s) 214, 328
BshNI GGYRCC 2 cut(s) 153, 471
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 298
BslFI GGGAC 1 cut(s) 609
BslI CCNNNNNNNGG 3 cut(s) 12, 377, 481
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 609
BsnI GGCC 2 cut(s) 214, 328
Bsp1286I GDGCHC 1 cut(s) 312
Bsp1407I TGTACA 1 cut(s) 631
Bsp143I GATC 4 cut(s) 27, 94, 560, 716
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 2 cut(s) 151, 778
BspANI GGCC 2 cut(s) 214, 328
BspCNI CTCAG 4 cut(s) 154, 243, 381, 617
BspLI GGNNCC 4 cut(s) 155, 227, 473, 625
BspPI GGATC 2 cut(s) 102, 568
BspT107I GGYRCC 2 cut(s) 153, 471
BsrBI CCGCTC 1 cut(s) 778
BsrGI TGTACA 1 cut(s) 631
BsrI ACTGG 1 cut(s) 627
BssECI CCNNGG 2 cut(s) 417, 759
BssMI GATC 4 cut(s) 27, 94, 560, 716
BssNI GRCGYC 1 cut(s) 154
BssT1I CCWWGG 2 cut(s) 417, 759
Bst2UI CCWGG 3 cut(s) 54, 83, 372
Bst4CI ACNGT 3 cut(s) 225, 241, 641
Bst6I CTCTTC 4 cut(s) 687, 707, 785, 795
BstACI GRCGYC 1 cut(s) 154
BstAUI TGTACA 1 cut(s) 631
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 5 cut(s) 66, 162, 230, 389, 604
BstDSI CCRYGG 1 cut(s) 417
BstEII GGTNACC 1 cut(s) 16
BstF5I GGATG 4 cut(s) 325, 352, 573, 577
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 4 cut(s) 30, 97, 563, 719
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 4 cut(s) 27, 94, 560, 716
BstMWI GCNNNNNNNGC 3 cut(s) 266, 298, 307
BstNI CCWGG 3 cut(s) 54, 83, 372
BstNSI RCATGY 1 cut(s) 182
BstPI GGTNACC 1 cut(s) 16
BstSCI CCNGG 3 cut(s) 52, 81, 370
BstV1I GCAGC 2 cut(s) 106, 152
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
Bsu36I CCTNAGG 1 cut(s) 66
BsuRI GGCC 2 cut(s) 214, 328
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 4 cut(s) 325, 352, 573, 577
BtsIMutI CAGTG 2 cut(s) 238, 634
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 1 cut(s) 156
Cfr13I GGNCC 3 cut(s) 581, 623, 653
CsiI ACCWGGT 2 cut(s) 52, 81
Csp6I GTAC 1 cut(s) 632
CviAII CATG 2 cut(s) 179, 418
CviQI GTAC 1 cut(s) 632
DdeI CTNAG 5 cut(s) 66, 162, 230, 389, 604
DinI GGCGCC 1 cut(s) 155
DpnI GATC 4 cut(s) 29, 96, 562, 718
DpnII GATC 4 cut(s) 27, 94, 560, 716
Eam1104I CTCTTC 4 cut(s) 687, 707, 785, 795
EarI CTCTTC 4 cut(s) 687, 707, 785, 795
Ecl136II GAGCTC 1 cut(s) 310
Eco130I CCWWGG 2 cut(s) 417, 759
Eco147I AGGCCT 1 cut(s) 328
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 3 cut(s) 581, 623, 653
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 711
Eco81I CCTNAGG 1 cut(s) 66
Eco91I GGTNACC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 581
EcoO65I GGTNACC 1 cut(s) 16
EcoRII CCWGG 3 cut(s) 52, 81, 370
EcoT14I CCWWGG 2 cut(s) 417, 759
EcoT38I GRGCYC 1 cut(s) 312
EgeI GGCGCC 1 cut(s) 155
EheI GGCGCC 1 cut(s) 155
ErhI CCWWGG 2 cut(s) 417, 759
FaeI CATG 2 cut(s) 182, 421
FaiI YATR 8 cut(s) 131, 180, 419, 463, 465, 651, 679, 822
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FaqI GGGAC 1 cut(s) 609
FatI CATG 2 cut(s) 178, 417
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 3 cut(s) 120, 141, 152
FokI GGATG 4 cut(s) 332, 359, 580, 584
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 3 cut(s) 120, 141, 152
FspBI CTAG 2 cut(s) 257, 399
GlaI GCGC 1 cut(s) 155
GluI GCNGC 3 cut(s) 120, 141, 152
GsuI CTGGAG 1 cut(s) 393
HaeII RGCGCY 1 cut(s) 157
HaeIII GGCC 2 cut(s) 214, 328
HapII CCGG 1 cut(s) 298
HhaI GCGC 1 cut(s) 156
Hin1I GRCGYC 1 cut(s) 154
Hin1II CATG 2 cut(s) 182, 421
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 3 cut(s) 367, 602, 683
HpaII CCGG 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 632
Hpy188I TCNGA 5 cut(s) 90, 390, 601, 607, 691
Hpy188III TCNNGA 2 cut(s) 98, 735
Hpy8I GTNNAC 1 cut(s) 632
HpyAV CCTTC 5 cut(s) 160, 164, 337, 675, 790
HpyCH4III ACNGT 3 cut(s) 225, 241, 641
HpyCH4IV ACGT 1 cut(s) 595
HpyCH4V TGCA 2 cut(s) 122, 178
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 298, 307
HpyF3I CTNAG 5 cut(s) 66, 162, 230, 389, 604
HpySE526I ACGT 1 cut(s) 595
Hsp92I GRCGYC 1 cut(s) 154
Hsp92II CATG 2 cut(s) 182, 421
HspAI GCGC 1 cut(s) 154
KasI GGCGCC 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 4 cut(s) 27, 94, 560, 716
LmnI GCTCC 2 cut(s) 551, 697
Lsp1109I GCAGC 2 cut(s) 106, 152
MabI ACCWGGT 2 cut(s) 52, 81
MaeI CTAG 2 cut(s) 257, 399
MaeII ACGT 1 cut(s) 595
MaeIII GTNAC 3 cut(s) 16, 77, 542
MalI GATC 4 cut(s) 29, 96, 562, 718
MbiI CCGCTC 1 cut(s) 778
MboI GATC 4 cut(s) 27, 94, 560, 716
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 5 cut(s) 123, 146, 217, 314, 518
Mly113I GGCGCC 1 cut(s) 154
MlyI GAGTC 1 cut(s) 596
MmeI TCCRAC 1 cut(s) 538
MseI TTAA 2 cut(s) 497, 826
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 1 cut(s) 298
MspR9I CCNGG 3 cut(s) 54, 83, 372
MvaI CCWGG 3 cut(s) 54, 83, 372
MwoI GCNNNNNNNGC 3 cut(s) 266, 298, 307
NarI GGCGCC 1 cut(s) 154
NcoI CCATGG 1 cut(s) 417
NdeII GATC 4 cut(s) 27, 94, 560, 716
NlaIII CATG 2 cut(s) 182, 421
NlaIV GGNNCC 4 cut(s) 155, 227, 473, 625
NmuCI GTSAC 1 cut(s) 542
NspI RCATGY 1 cut(s) 182
PaeI GCATGC 1 cut(s) 182
PceI AGGCCT 1 cut(s) 328
PfeI GAWTC 2 cut(s) 367, 683
PfoI TCCNGGA 1 cut(s) 370
PkrI GCNGC 3 cut(s) 121, 142, 153
PleI GAGTC 1 cut(s) 596
PluTI GGCGCC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 596
PpuMI RGGWCCY 1 cut(s) 581
Psp124BI GAGCTC 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 581
Psp6I CCWGG 3 cut(s) 52, 81, 370
PspEI GGTNACC 1 cut(s) 16
PspGI CCWGG 3 cut(s) 52, 81, 370
PspN4I GGNNCC 4 cut(s) 155, 227, 473, 625
PspPI GGNCC 3 cut(s) 581, 623, 653
PspPPI RGGWCCY 1 cut(s) 581
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 1 cut(s) 633
RsaNI GTAC 1 cut(s) 632
RseI CAYNNNNRTG 1 cut(s) 416
SacI GAGCTC 1 cut(s) 312
SaqAI TTAA 2 cut(s) 497, 826
SatI GCNGC 3 cut(s) 120, 141, 152
Sau3AI GATC 4 cut(s) 27, 94, 560, 716
Sau96I GGNCC 3 cut(s) 581, 623, 653
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 3 cut(s) 54, 83, 372
SduI GDGCHC 1 cut(s) 312
SexAI ACCWGGT 2 cut(s) 52, 81
SfoI GGCGCC 1 cut(s) 155
SinI GGWCC 3 cut(s) 581, 623, 653
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SphI GCATGC 1 cut(s) 182
Sse9I AATT 5 cut(s) 123, 146, 217, 314, 518
SseBI AGGCCT 1 cut(s) 328
SsiI CCGC 2 cut(s) 151, 778
SspDI GGCGCC 1 cut(s) 153
SspI AATATT 1 cut(s) 818
SspMI CTAG 2 cut(s) 257, 399
SstI GAGCTC 1 cut(s) 312
StuI AGGCCT 1 cut(s) 328
StyD4I CCNGG 3 cut(s) 52, 81, 370
StyI CCWWGG 2 cut(s) 417, 759
TaaI ACNGT 3 cut(s) 225, 241, 641
TaiI ACGT 1 cut(s) 598
TaqI TCGA 1 cut(s) 312
TasI AATT 5 cut(s) 123, 146, 217, 314, 518
TatI WGTACW 1 cut(s) 631
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 2 cut(s) 367, 683
Tru1I TTAA 2 cut(s) 497, 826
Tru9I TTAA 2 cut(s) 497, 826
TscAI CASTG 2 cut(s) 238, 634
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 2 cut(s) 119, 140
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 7 cut(s) 35, 297, 336, 356, 435, 519, 588
TspRI CASTG 2 cut(s) 238, 634
VpaK11BI GGWCC 3 cut(s) 581, 623, 653
XapI RAATTY 2 cut(s) 217, 518
XceI RCATGY 1 cut(s) 182
XspI CTAG 2 cut(s) 257, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.