Prupe.8G155900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0007110
Physical Location & Seq
Reverse (-)
16702140 .. 16704878
2739 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G155900.1

Sequence Viewer

Length: 741 bp
ATGGATCTTGAGACAGAAAACAGAATAGCTGCGATTCTTATGAAAGAAGCTGCTGAATTGCGGCGCCAAGCTGAGAAGGAAGGTGTGCATGCTTATCTTCGACAACCTCAAACACGGTTTCGGCCAAATTCACGGTTCCTCAGCGCTACTGTTCTTGGTGTGCAACAAGCAAATCGAGCTGTGGAAGTGAATGAAATGTGGCGACTCCGGCAGAAAGAGATAGAATTGGACAATAGGCTTAAAGGAAAGATGAAGGATGAGAGCAGAAATGACAGGAGTCGAGGAGACAGTAACTGTTCGAGAAGCAGCAGTAAGGGGCATGATGTCACAGATGACAATGCTAGTCCTTCTTGCTCATCAAGGAAAAGGGAATATGAGAGCTGCCATTCAAGGGAAGAAAATGGTCTAAGAGATGAAGAACTTGAAGAATTTTTACATTCAAGGGTCAAGCGTGGCAGAGGTGCTGTTGGATCAAGGATGGATGAAGCGGGTCCATATCTTCCACGTGATTCAGACTCCAGGGACGAGCTGCTAGTGAGCCCCGGTGTACAAGAACGCCGTGTGTATGGACCAGAGAAGCCTTCACGGAAGTTATATGATTCTTCCAAAGAGGAGCTTGACTATGACAGGAAGAAATCAAAAAAAGTTAAGGCTGCTAGCTCGAAGAAGCACAAATCCAAGGATAAATCGAAAGAGAAGAAGAAGAAGAGGAAGGAAGAGCGAAGTAAATACCTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

28.55

Weight (kDa)

9.67

Isoelectric Point (pI)

68.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 63
AciI CCGC 2 cut(s) 61, 488
AclWI GGATC 2 cut(s) 12, 478
AcoI YGGCCR 1 cut(s) 122
AcsI RAATTY 2 cut(s) 127, 428
AcvI CACGTG 1 cut(s) 506
AcyI GRCGYC 1 cut(s) 64
AfaI GTAC 1 cut(s) 549
AfeI AGCGCT 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 391
AgsI TTSAA 3 cut(s) 390, 425, 441
AjnI CCWGG 1 cut(s) 518
AluBI AGCT 8 cut(s) 29, 50, 71, 179, 381, 529, 616, 660
AluI AGCT 8 cut(s) 29, 50, 71, 179, 381, 529, 616, 660
Alw26I GTCTC 2 cut(s) 5, 279
AlwI GGATC 2 cut(s) 12, 478
AlwNI CAGNNNCTG 1 cut(s) 294
Aor51HI AGCGCT 1 cut(s) 145
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 6 cut(s) 29, 50, 306, 381, 529, 653
ApoI RAATTY 2 cut(s) 127, 428
AspLEI GCGC 2 cut(s) 66, 146
AspS9I GGNCC 2 cut(s) 491, 569
AsuC2I CCSGG 1 cut(s) 543
AsuNHI GCTAGC 1 cut(s) 656
AvaII GGWCC 2 cut(s) 491, 569
BanI GGYRCC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 542
BarI GAAGNNNNNNTAC 2 cut(s) 417, 449
BbrPI CACGTG 1 cut(s) 506
BbvCI CCTCAGC 1 cut(s) 140
BbvI GCAGC 6 cut(s) 16, 37, 318, 368, 516, 640
BccI CCATC 1 cut(s) 472
BceAI ACGGC 1 cut(s) 543
BciT130I CCWGG 1 cut(s) 520
BcnI CCSGG 1 cut(s) 543
BcoDI GTCTC 2 cut(s) 5, 279
BfaI CTAG 3 cut(s) 342, 533, 657
BfoI RGCGCY 2 cut(s) 67, 147
BisI GCNGC 7 cut(s) 30, 51, 62, 307, 382, 530, 654
BlsI GCNGC 7 cut(s) 31, 52, 63, 308, 383, 531, 655
Bme1390I CCNGG 2 cut(s) 520, 543
Bme18I GGWCC 2 cut(s) 491, 569
BmgT120I GGNCC 2 cut(s) 491, 569
BmiI GGNNCC 3 cut(s) 65, 137, 492
BmrFI CCNGG 2 cut(s) 520, 543
BmtI GCTAGC 1 cut(s) 660
BoxI GACNNNNGTC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 502
Bpu10I CCTNAGC 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 543
BsaAI YACGTR 1 cut(s) 506
BsaHI GRCGYC 1 cut(s) 64
BsaJI CCNNGG 3 cut(s) 519, 541, 678
Bsc4I CCNNNNNNNGG 1 cut(s) 391
BseBI CCWGG 1 cut(s) 520
BseDI CCNNGG 3 cut(s) 519, 541, 678
BseGI GGATG 3 cut(s) 262, 483, 487
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMII CTCAG 2 cut(s) 63, 154
BseRI GAGGAG 2 cut(s) 297, 626
BseXI GCAGC 6 cut(s) 16, 37, 318, 368, 516, 640
BshFI GGCC 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 63
BsiSI CCGG 2 cut(s) 208, 543
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 2 cut(s) 5, 279
BsmFI GGGAC 1 cut(s) 536
BsnI GGCC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 542
Bsp1407I TGTACA 1 cut(s) 547
Bsp143I GATC 2 cut(s) 4, 470
BspACI CCGC 2 cut(s) 61, 488
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 2 cut(s) 64, 153
BspLI GGNNCC 3 cut(s) 65, 137, 492
BspOI GCTAGC 1 cut(s) 660
BspPI GGATC 2 cut(s) 12, 478
BspQI GCTCTTC 1 cut(s) 711
BspT107I GGYRCC 1 cut(s) 63
BsrGI TGTACA 1 cut(s) 547
BssECI CCNNGG 3 cut(s) 519, 541, 678
BssMI GATC 2 cut(s) 4, 470
BssNI GRCGYC 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 678
Bst2UI CCWGG 1 cut(s) 520
Bst4CI ACNGT 5 cut(s) 117, 135, 151, 290, 296
Bst6I CTCTTC 2 cut(s) 701, 711
BstACI GRCGYC 1 cut(s) 64
BstAUI TGTACA 1 cut(s) 547
BstBAI YACGTR 1 cut(s) 506
BstC8I GCNNGC 2 cut(s) 90, 658
BstDEI CTNAG 3 cut(s) 72, 140, 407
BstF5I GGATG 3 cut(s) 262, 483, 487
BstH2I RGCGCY 2 cut(s) 67, 147
BstHHI GCGC 2 cut(s) 66, 146
BstKTI GATC 2 cut(s) 7, 473
BstMAI GTCTC 2 cut(s) 5, 279
BstMBI GATC 2 cut(s) 4, 470
BstMWI GCNNNNNNNGC 2 cut(s) 176, 208
BstNI CCWGG 1 cut(s) 520
BstNSI RCATGY 1 cut(s) 92
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 2 cut(s) 518, 541
BstV1I GCAGC 6 cut(s) 16, 37, 318, 368, 516, 640
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 124
BtsCI GGATG 3 cut(s) 262, 483, 487
Cac8I GCNNGC 2 cut(s) 90, 658
CaiI CAGNNNCTG 1 cut(s) 294
CfoI GCGC 2 cut(s) 66, 146
Cfr13I GGNCC 2 cut(s) 491, 569
Csp6I GTAC 1 cut(s) 548
CviAII CATG 2 cut(s) 89, 320
CviQI GTAC 1 cut(s) 548
DdeI CTNAG 3 cut(s) 72, 140, 407
DinI GGCGCC 1 cut(s) 65
DpnI GATC 2 cut(s) 6, 472
DpnII GATC 2 cut(s) 4, 470
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 2 cut(s) 701, 711
EarI CTCTTC 2 cut(s) 701, 711
Eco130I CCWWGG 1 cut(s) 678
Eco24I GRGCYC 1 cut(s) 542
Eco47I GGWCC 2 cut(s) 491, 569
Eco47III AGCGCT 1 cut(s) 145
Eco72I CACGTG 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 678
EcoT38I GRGCYC 1 cut(s) 542
EgeI GGCGCC 1 cut(s) 65
EheI GGCGCC 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 678
FaeI CATG 2 cut(s) 92, 323
FaiI YATR 9 cut(s) 41, 90, 321, 375, 496, 567, 595, 597, 624
FalI AAGNNNNNCTT 2 cut(s) 600, 632
FaqI GGGAC 1 cut(s) 536
FatI CATG 2 cut(s) 88, 319
FauI CCCGC 1 cut(s) 481
Fnu4HI GCNGC 7 cut(s) 30, 51, 62, 307, 382, 530, 654
FokI GGATG 3 cut(s) 269, 490, 494
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 7 cut(s) 30, 51, 62, 307, 382, 530, 654
FspBI CTAG 3 cut(s) 342, 533, 657
GlaI GCGC 2 cut(s) 65, 145
GluI GCNGC 7 cut(s) 30, 51, 62, 307, 382, 530, 654
GsuI CTGGAG 1 cut(s) 502
HaeII RGCGCY 2 cut(s) 67, 147
HaeIII GGCC 1 cut(s) 124
HapII CCGG 2 cut(s) 208, 543
HhaI GCGC 2 cut(s) 66, 146
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 2 cut(s) 92, 323
Hin6I GCGC 2 cut(s) 64, 144
HinP1I GCGC 2 cut(s) 64, 144
HinfI GANTC 6 cut(s) 34, 204, 277, 509, 515, 599
HpaII CCGG 2 cut(s) 208, 543
Hpy166II GTNNAC 1 cut(s) 548
Hpy188I TCNGA 1 cut(s) 514
Hpy188III TCNNGA 2 cut(s) 8, 300
Hpy8I GTNNAC 1 cut(s) 548
HpyAV CCTTC 6 cut(s) 70, 74, 247, 357, 591, 706
HpyCH4III ACNGT 5 cut(s) 117, 135, 151, 290, 296
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 2 cut(s) 88, 163
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 208
HpyF3I CTNAG 3 cut(s) 72, 140, 407
HpySE526I ACGT 1 cut(s) 505
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 2 cut(s) 92, 323
HspAI GCGC 2 cut(s) 64, 144
KasI GGCGCC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 4, 470
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 1 cut(s) 613
LpnPI CCDG 7 cut(s) 221, 259, 505, 532, 556, 585, 613
Lsp1109I GCAGC 6 cut(s) 16, 37, 318, 368, 516, 640
MaeI CTAG 3 cut(s) 342, 533, 657
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 2 cut(s) 290, 325
MalI GATC 2 cut(s) 6, 472
MboI GATC 2 cut(s) 4, 470
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 542
MluCI AATT 4 cut(s) 56, 127, 224, 428
Mly113I GGCGCC 1 cut(s) 64
MlyI GAGTC 3 cut(s) 198, 286, 509
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 6 cut(s) 117, 149, 275, 452, 604, 702
MseI TTAA 2 cut(s) 240, 648
MspI CCGG 2 cut(s) 208, 543
MspR9I CCNGG 2 cut(s) 520, 543
MvaI CCWGG 1 cut(s) 520
MwoI GCNNNNNNNGC 2 cut(s) 176, 208
NarI GGCGCC 1 cut(s) 64
NciI CCSGG 1 cut(s) 543
NdeII GATC 2 cut(s) 4, 470
NheI GCTAGC 1 cut(s) 656
NlaIII CATG 2 cut(s) 92, 323
NlaIV GGNNCC 3 cut(s) 65, 137, 492
NmuCI GTSAC 1 cut(s) 325
NspI RCATGY 1 cut(s) 92
PaeI GCATGC 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 711
PfeI GAWTC 3 cut(s) 34, 509, 599
PkrI GCNGC 7 cut(s) 31, 52, 63, 308, 383, 531, 655
PleI GAGTC 3 cut(s) 198, 285, 509
PluTI GGCGCC 1 cut(s) 67
PmaCI CACGTG 1 cut(s) 506
PmlI CACGTG 1 cut(s) 506
PpsI GAGTC 3 cut(s) 198, 285, 509
Ppu21I YACGTR 1 cut(s) 506
PshAI GACNNNNGTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 518
PspCI CACGTG 1 cut(s) 506
PspGI CCWGG 1 cut(s) 518
PspN4I GGNNCC 3 cut(s) 65, 137, 492
PspPI GGNCC 2 cut(s) 491, 569
PstNI CAGNNNCTG 1 cut(s) 294
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 549
RsaNI GTAC 1 cut(s) 548
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 2 cut(s) 240, 648
SatI GCNGC 7 cut(s) 30, 51, 62, 307, 382, 530, 654
Sau3AI GATC 2 cut(s) 4, 470
Sau96I GGNCC 2 cut(s) 491, 569
SchI GAGTC 3 cut(s) 198, 286, 509
ScrFI CCNGG 2 cut(s) 520, 543
SduI GDGCHC 1 cut(s) 542
SfoI GGCGCC 1 cut(s) 65
SinI GGWCC 2 cut(s) 491, 569
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SphI GCATGC 1 cut(s) 92
Sse9I AATT 4 cut(s) 56, 127, 224, 428
SsiI CCGC 2 cut(s) 61, 488
SspDI GGCGCC 1 cut(s) 63
SspMI CTAG 3 cut(s) 342, 533, 657
StyD4I CCNGG 2 cut(s) 518, 541
StyI CCWWGG 1 cut(s) 678
TaaI ACNGT 5 cut(s) 117, 135, 151, 290, 296
TaiI ACGT 1 cut(s) 508
TaqI TCGA 6 cut(s) 100, 175, 280, 299, 662, 689
TasI AATT 4 cut(s) 56, 127, 224, 428
TatI WGTACW 1 cut(s) 547
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 3 cut(s) 34, 509, 599
Tru1I TTAA 2 cut(s) 240, 648
Tru9I TTAA 2 cut(s) 240, 648
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 6 cut(s) 29, 50, 306, 381, 529, 653
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 5 cut(s) 56, 207, 266, 429, 498
TspGWI ACGGA 1 cut(s) 601
VpaK11BI GGWCC 2 cut(s) 491, 569
XapI RAATTY 2 cut(s) 127, 428
XceI RCATGY 1 cut(s) 92
XspI CTAG 3 cut(s) 342, 533, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.