Rh6AG037900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007110
Physical Location & Seq
Forward (+)
5113581 .. 5117005
3425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG037900.1

Sequence Viewer

Length: 543 bp
ATGTGGCGAATCCGGCAGAAAGAGCTCGAATTGGATGAAAGGCTTAAAAGCAAGATGAAGGATGAGAGCAGAAATGACAGGAATCCTGGAGATGGCAACACTTCGAGAAGCACTAGCAAGAGGCACGCTTCCATGGAGGATAATGTTAGTGCTACTTGTTCATCAAGCCAAGGAGTATATGAGAGATGCCATTTAAGGGAAGAGAATGGATTAAGAGACGAAGAACTTGAAGAATTTTTACATTCAAGGGTCAAGCGTGGCAGAGGAGCTGTTGGGTCAAGGATGGATGAAACAGGTCCATATCTTCCACGTTCGGACTCCGAGGAACAGATAGCTGGTCCCAGTGTACAAGAACGTCGTGTTTATGGACCAGAGAAGCCTTCACAGAAGTTATGTGACTCTTCTGAAGAGGAGCTTCCCAACAGGAAGAGATCAAAAAAGGTTTCTTCTGGAAGCTCAAAGAAGCACAGATCCAAGGATAAGTCTAAAGAGCGGAAAAAGAAGAAGAGGAAAGAAGAGAAAAGAAGTAAATATTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.96

Weight (kDa)

9.64

Isoelectric Point (pI)

75.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 493
AciI CCGC 1 cut(s) 493
AclWI GGATC 1 cut(s) 465
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 2 cut(s) 92, 196
AgsI TTSAA 2 cut(s) 230, 246
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 5 cut(s) 25, 269, 335, 415, 456
AluI AGCT 5 cut(s) 25, 269, 335, 415, 456
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 1 cut(s) 465
ApoI RAATTY 1 cut(s) 233
AspS9I GGNCC 3 cut(s) 296, 338, 368
AvaII GGWCC 3 cut(s) 296, 338, 368
BanII GRGCYC 1 cut(s) 27
BarI GAAGNNNNNNTAC 2 cut(s) 222, 254
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 2 cut(s) 86, 277
BciT130I CCWGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 1 cut(s) 114
Bme1390I CCNGG 1 cut(s) 87
Bme18I GGWCC 3 cut(s) 296, 338, 368
BmgT120I GGNCC 3 cut(s) 296, 338, 368
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 87
BmrI ACTGGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 176
BmuI ACTGGG 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 108
BsaJI CCNNGG 4 cut(s) 132, 169, 321, 474
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 196
Bse1I ACTGG 1 cut(s) 342
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 4 cut(s) 132, 169, 321, 474
BseGI GGATG 4 cut(s) 40, 67, 288, 292
BseLI CCNNNNNNNGG 2 cut(s) 92, 196
BseNI ACTGG 1 cut(s) 342
BseRI GAGGAG 2 cut(s) 279, 425
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 2 cut(s) 92, 196
BsmAI GTCTC 1 cut(s) 210
BsmBI CGTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 27
Bsp1407I TGTACA 1 cut(s) 346
Bsp143I GATC 2 cut(s) 431, 470
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 1 cut(s) 493
BspLI GGNNCC 1 cut(s) 340
BspPI GGATC 1 cut(s) 465
BsrBI CCGCTC 1 cut(s) 493
BsrGI TGTACA 1 cut(s) 346
BsrI ACTGG 1 cut(s) 342
BssECI CCNNGG 4 cut(s) 132, 169, 321, 474
BssMI GATC 2 cut(s) 431, 470
BssT1I CCWWGG 3 cut(s) 132, 169, 474
Bst2UI CCWGG 1 cut(s) 87
Bst6I CTCTTC 6 cut(s) 195, 402, 406, 422, 500, 510
BstAUI TGTACA 1 cut(s) 346
BstC8I GCNNGC 1 cut(s) 126
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 4 cut(s) 40, 67, 288, 292
BstKTI GATC 2 cut(s) 434, 473
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 2 cut(s) 431, 470
BstMWI GCNNNNNNNGC 2 cut(s) 13, 22
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 470
BstYI RGATCY 1 cut(s) 470
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 4 cut(s) 40, 67, 288, 292
BtsIMutI CAGTG 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 126
Cfr13I GGNCC 3 cut(s) 296, 338, 368
Csp6I GTAC 1 cut(s) 347
CviAII CATG 1 cut(s) 133
CviJI RGCY 8 cut(s) 25, 43, 168, 269, 335, 379, 415, 456
CviKI_1 RGCY 8 cut(s) 25, 43, 168, 269, 335, 379, 415, 456
CviQI GTAC 1 cut(s) 347
DpnI GATC 2 cut(s) 433, 472
DpnII GATC 2 cut(s) 431, 470
Eam1104I CTCTTC 6 cut(s) 195, 402, 406, 422, 500, 510
EarI CTCTTC 6 cut(s) 195, 402, 406, 422, 500, 510
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 3 cut(s) 132, 169, 474
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 3 cut(s) 296, 338, 368
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 426
EcoICRI GAGCTC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 85
EcoT14I CCWWGG 3 cut(s) 132, 169, 474
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 3 cut(s) 132, 169, 474
Esp3I CGTCTC 1 cut(s) 210
FaeI CATG 1 cut(s) 136
FaiI YATR 7 cut(s) 134, 178, 180, 301, 366, 394, 537
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FaqI GGGAC 1 cut(s) 324
FatI CATG 1 cut(s) 132
FokI GGATG 4 cut(s) 47, 74, 295, 299
FriOI GRGCYC 1 cut(s) 27
FspBI CTAG 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 108
HapII CCGG 1 cut(s) 13
Hin1II CATG 1 cut(s) 136
HinfI GANTC 4 cut(s) 9, 82, 317, 398
HpaII CCGG 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 3 cut(s) 316, 322, 406
Hpy188III TCNNGA 2 cut(s) 105, 450
Hpy8I GTNNAC 1 cut(s) 347
Hpy99I CGWCG 1 cut(s) 360
HpyAV CCTTC 2 cut(s) 52, 390
HpyCH4IV ACGT 2 cut(s) 310, 355
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 22
HpySE526I ACGT 2 cut(s) 310, 355
Hsp92II CATG 1 cut(s) 136
Kzo9I GATC 2 cut(s) 431, 470
LmnI GCTCC 2 cut(s) 266, 412
LweI GCATC 1 cut(s) 176
MaeI CTAG 1 cut(s) 114
MaeII ACGT 2 cut(s) 310, 355
MaeIII GTNAC 1 cut(s) 395
MalI GATC 2 cut(s) 433, 472
MbiI CCGCTC 1 cut(s) 493
MboI GATC 2 cut(s) 431, 470
MflI RGATCY 1 cut(s) 470
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 2 cut(s) 29, 233
MlyI GAGTC 2 cut(s) 311, 392
MnlI CCTC 6 cut(s) 114, 130, 257, 316, 403, 501
MseI TTAA 4 cut(s) 45, 194, 212, 541
MspI CCGG 1 cut(s) 13
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
MwoI GCNNNNNNNGC 2 cut(s) 13, 22
NcoI CCATGG 1 cut(s) 132
NdeII GATC 2 cut(s) 431, 470
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 9, 82
PfoI TCCNGGA 1 cut(s) 85
PleI GAGTC 2 cut(s) 311, 392
PpsI GAGTC 2 cut(s) 311, 392
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 340
PspPI GGNCC 3 cut(s) 296, 338, 368
PsuI RGATCY 1 cut(s) 470
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 4 cut(s) 45, 194, 212, 541
Sau3AI GATC 2 cut(s) 431, 470
Sau96I GGNCC 3 cut(s) 296, 338, 368
SchI GAGTC 2 cut(s) 311, 392
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 1 cut(s) 27
SetI ASST 9 cut(s) 27, 271, 298, 313, 337, 358, 417, 444, 458
SfaNI GCATC 1 cut(s) 176
SinI GGWCC 3 cut(s) 296, 338, 368
Sse9I AATT 2 cut(s) 29, 233
SsiI CCGC 1 cut(s) 493
SspI AATATT 1 cut(s) 533
SspMI CTAG 1 cut(s) 114
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 85
StyI CCWWGG 3 cut(s) 132, 169, 474
TaiI ACGT 2 cut(s) 313, 358
TaqI TCGA 2 cut(s) 27, 104
TasI AATT 2 cut(s) 29, 233
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 2 cut(s) 9, 82
Tru1I TTAA 4 cut(s) 45, 194, 212, 541
Tru9I TTAA 4 cut(s) 45, 194, 212, 541
TscAI CASTG 1 cut(s) 349
TseFI GTSAC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 4 cut(s) 51, 71, 150, 303
TspRI CASTG 1 cut(s) 349
VpaK11BI GGWCC 3 cut(s) 296, 338, 368
XapI RAATTY 1 cut(s) 233
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.