Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007110

Physical Location & Seq

Genomic Coordinates Reverse (-)

18748154 .. 18751348

Gene Structure 3195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1114400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAGAGAAGCCGCTGAATTGCGGCGTCAAGCTGACAAGGAAGGTGTGCATGCTTATCTTCAACAGCCTAAAACAAGGTTCCGACCAAATTCACGGTTCCTCAGTGCTACTGTTCGTGGTGTGCAACAAGCAAATCGAGCTGTTGAAGTGAATGAAATGTGGCGACTCCGGCAGAAAGAGAAGGAATTGGACAATAGGCTGAAAGGGAACAAGGATGAGAGCAGGTGTCGCGGAGATAGCGACTCTCCAACACCCAGTGGTAAGGGACATGCCGTCGCAGATGACAGTGCCGGTCCTTCTTGCTCGTCAAGGAAAAGAGAATACGAGAGCTGCCATTCAAGGCAAGAGAATGGTTTAGGAGAAGAAGAACTCGAAGAATTTTTACATTCAAGAGTCAAGCGTGGCAGAGGTGCTGTTGGGTCAAGGACGGATGAAACGGGTCCTTATCTTCCCCGTTCTTCGGACTCCAATGAAGAGCTGCTGCAGAGGCCCAGTGTACAAGAACACCGTGCGTATGGACCAGAGAGGCCTTCACATAACTTATGTTATCCTTCCGAAGAGGAGAATGACGATGAGAGGAAGAAATCAAAAAAGGTGAAGTCTGGTAGCCCGAACAAGCACAAATGCAAGGAAAAATCTAAAGAGAAGAAGAGGAAGGACGAAAAAAGAAATAAATACCATACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

26.23

Weight (kDa)

9.42

Isoelectric Point (pI)

66.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33690
fragaria_vesca	FvH4_2g02710 FvH4_2g02710 FvH4_2g02710
malus_domestica	MD05G1110900.v1.1 MD10G1114400.v1.1
prunus_persica	Prupe.8G155900_v2.0.a1 Prupe.8G155900_v2.0.a1
pyrus_communis	pycom10g09880
rosa_chinensis	RchiOBHm_Chr6g0247131
rosa_laevigata	RLG00000015218 RLG00000030364
rosa_multiflora	Rmu_sc0004577.1_g000013
rosa_roxburghii	Rroxscaffold_7G00214320
rosa_rugosa	Rorug05G0522700 Rorug05G0522700 Rorug05G0522700 Rorug05G0522800 Rorug05G0522900 Rorug05G0522900
rosa_samantha	Rh6AG037900 Rh6BG032800 Rh6CG033600 Rh6DG031300
rosa_wichuraiana	Rw6G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	213
AccII	CGCG	1 cut(s)	231
AciI	CCGC	3 cut(s)	12, 22, 231
AcsI	RAATTY	2 cut(s)	88, 377
AcyI	GRCGYC	1 cut(s)	25
AdeI	CACNNNGTG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	498
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgsI	TTSAA	4 cut(s)	62, 146, 339, 390
AhdI	GACNNNNNGTC	1 cut(s)	272
AluBI	AGCT	4 cut(s)	32, 140, 330, 478
AluI	AGCT	4 cut(s)	32, 140, 330, 478
AoxI	GGCC	2 cut(s)	488, 527
ApeKI	GCWGC	3 cut(s)	330, 478, 481
ApoI	RAATTY	2 cut(s)	88, 377
AspS9I	GGNCC	4 cut(s)	293, 440, 489, 518
AsuHPI	GGTGA	1 cut(s)	607
AvaII	GGWCC	3 cut(s)	293, 440, 518
BarI	GAAGNNNNNNTAC	2 cut(s)	366, 398
BbvI	GCAGC	3 cut(s)	317, 465, 468
BceAI	ACGGC	1 cut(s)	257
BfmI	CTRYAG	1 cut(s)	482
BfuAI	ACCTGC	1 cut(s)	213
BisI	GCNGC	5 cut(s)	12, 23, 331, 479, 482
BlsI	GCNGC	5 cut(s)	13, 24, 332, 480, 483
Bme18I	GGWCC	3 cut(s)	293, 440, 518
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmgT120I	GGNCC	4 cut(s)	293, 440, 489, 518
BmiI	GGNNCC	3 cut(s)	80, 98, 441
BmrI	ACTGGG	2 cut(s)	249, 486
BmuI	ACTGGG	2 cut(s)	249, 486
BsaHI	GRCGYC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	255, 492
BseGI	GGATG	2 cut(s)	220, 436
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	115
BseNI	ACTGG	2 cut(s)	255, 492
BseRI	GAGGAG	1 cut(s)	575
BseXI	GCAGC	3 cut(s)	317, 465, 468
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	490, 529
BsiSI	CCGG	2 cut(s)	169, 291
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	490, 529
Bsp1407I	TGTACA	1 cut(s)	496
BspACI	CCGC	3 cut(s)	12, 22, 231
BspANI	GGCC	2 cut(s)	490, 529
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	3 cut(s)	80, 98, 441
BspMAI	CTGCAG	1 cut(s)	486
BspMI	ACCTGC	1 cut(s)	213
BspQI	GCTCTTC	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	496
BsrI	ACTGG	2 cut(s)	255, 492
BssAI	RCCGGY	1 cut(s)	290
BssNI	GRCGYC	1 cut(s)	25
Bst4CI	ACNGT	4 cut(s)	96, 112, 287, 509
Bst6I	CTCTTC	3 cut(s)	468, 552, 644
BstACI	GRCGYC	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	496
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	101, 684
BstF5I	GGATG	2 cut(s)	220, 436
BstFNI	CGCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 169, 228, 237, 487
BstNSI	RCATGY	2 cut(s)	53, 272
BstSFI	CTRYAG	1 cut(s)	482
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	317, 465, 468
BsuRI	GGCC	2 cut(s)	490, 529
BtsCI	GGATG	2 cut(s)	220, 436
BtsIMutI	CAGTG	4 cut(s)	109, 262, 292, 499
BveI	ACCTGC	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	4 cut(s)	293, 440, 489, 518
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	497
CviAII	CATG	2 cut(s)	50, 269
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	2 cut(s)	101, 684
DraIII	CACNNNGTG	1 cut(s)	257
DriI	GACNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	3 cut(s)	468, 552, 644
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	3 cut(s)	468, 552, 644
Eco147I	AGGCCT	1 cut(s)	529
Eco47I	GGWCC	3 cut(s)	293, 440, 518
EcoO109I	RGGNCCY	1 cut(s)	440
FaeI	CATG	2 cut(s)	53, 272
FaiI	YATR	6 cut(s)	51, 270, 516, 537, 544, 681
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	2 cut(s)	49, 268
Fnu4HI	GCNGC	5 cut(s)	12, 23, 331, 479, 482
FokI	GGATG	2 cut(s)	227, 443
Fsp4HI	GCNGC	5 cut(s)	12, 23, 331, 479, 482
GluI	GCNGC	5 cut(s)	12, 23, 331, 479, 482
HaeIII	GGCC	2 cut(s)	490, 529
HapII	CCGG	2 cut(s)	169, 291
HgaI	GACGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	25
Hin1II	CATG	2 cut(s)	53, 272
HinfI	GANTC	4 cut(s)	165, 242, 393, 464
HpaII	CCGG	2 cut(s)	169, 291
HphI	GGTGA	1 cut(s)	607
Hpy166II	GTNNAC	1 cut(s)	497
Hpy188I	TCNGA	3 cut(s)	83, 463, 556
Hpy188III	TCNNGA	1 cut(s)	390
Hpy8I	GTNNAC	1 cut(s)	497
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	6 cut(s)	35, 175, 306, 540, 561, 649
HpyCH4III	ACNGT	4 cut(s)	96, 112, 287, 509
HpyCH4V	TGCA	4 cut(s)	49, 124, 484, 627
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 169, 228, 237, 487
HpyF3I	CTNAG	2 cut(s)	101, 684
Hsp92I	GRCGYC	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	53, 272
LguI	GCTCTTC	1 cut(s)	468
LpnPI	CCDG	7 cut(s)	182, 208, 268, 304, 505, 534, 588
Lsp1109I	GCAGC	3 cut(s)	317, 465, 468
MluCI	AATT	4 cut(s)	17, 88, 185, 377
MlyI	GAGTC	4 cut(s)	159, 236, 402, 458
MmeI	TCCRAC	2 cut(s)	106, 272
MnlI	CCTC	7 cut(s)	110, 401, 480, 519, 553, 570, 645
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	2 cut(s)	169, 291
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	5 cut(s)	137, 169, 228, 237, 487
NlaIII	CATG	2 cut(s)	53, 272
NlaIV	GGNNCC	3 cut(s)	80, 98, 441
NspI	RCATGY	2 cut(s)	53, 272
PaeI	GCATGC	1 cut(s)	53
PaqCI	CACCTGC	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	529
PciSI	GCTCTTC	1 cut(s)	468
PkrI	GCNGC	5 cut(s)	13, 24, 332, 480, 483
PleI	GAGTC	4 cut(s)	159, 236, 401, 458
PpsI	GAGTC	4 cut(s)	159, 236, 401, 458
PpuMI	RGGWCCY	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	440
PspN4I	GGNNCC	3 cut(s)	80, 98, 441
PspPI	GGNCC	4 cut(s)	293, 440, 489, 518
PspPPI	RGGWCCY	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	486
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
SapI	GCTCTTC	1 cut(s)	468
SatI	GCNGC	5 cut(s)	12, 23, 331, 479, 482
Sau96I	GGNCC	4 cut(s)	293, 440, 489, 518
SchI	GAGTC	4 cut(s)	159, 236, 402, 458
SetI	ASST	9 cut(s)	34, 46, 80, 142, 227, 332, 412, 480, 597
SfcI	CTRYAG	1 cut(s)	482
SinI	GGWCC	3 cut(s)	293, 440, 518
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	4 cut(s)	17, 88, 185, 377
SseBI	AGGCCT	1 cut(s)	529
SsiI	CCGC	3 cut(s)	12, 22, 231
StuI	AGGCCT	1 cut(s)	529
TaaI	ACNGT	4 cut(s)	96, 112, 287, 509
TaqI	TCGA	2 cut(s)	136, 372
TasI	AATT	4 cut(s)	17, 88, 185, 377
TatI	WGTACW	1 cut(s)	496
TauI	GCSGC	2 cut(s)	14, 25
TscAI	CASTG	4 cut(s)	109, 262, 292, 499
TseI	GCWGC	3 cut(s)	330, 478, 481
TspDTI	ATGAA	3 cut(s)	168, 447, 486
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	4 cut(s)	109, 262, 292, 499
VpaK11BI	GGWCC	3 cut(s)	293, 440, 518
XapI	RAATTY	2 cut(s)	88, 377
XceI	RCATGY	2 cut(s)	53, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.