AT4G33890

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004824
Physical Location & Seq
Forward (+)
16249614 .. 16251383
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33890.2

Sequence Viewer

Length: 1029 bp
ATGGGATCAAATCAAGGTTCTTCCAGGTTAGATACGTTAGAGATTAAAGCTCTCATTTACCGGGAAATTGGGAATCAAAGAGCTGAGAGTTACTTCAATCAGCTCGGAAGATTCTTTGCCTTGAAGATCACCAAATCTGAATTCGACAAGTTGTGCATCAAGACCATTGGTAGACAAAACATCCATCTTCATAACCGTCTTATACGTTCCATCATCAAGAATGCTTGTATTGCCAAATCTCCACCATTTATAAAGAAAGGTGGGAGCTTTGTTAGATTTGGTAATGGGGATTCGAAGAAGAACAGTCAAATTCAGCCGCTTCATGGAGATTCTGCGTTTTCTCCTTCGACTCGTAAATGCAGGTCAAGGAAGTTGAGAGACAGGCCAAGTCCACTTGGTCCACTTGGGAAGCCTCATAGTTTAACTACGACGAATGAGGAGTCAATGTCAAAGGCACAAAGTGCTACTGAATTGTTGTCTCTAGGAAGTAGACCTCCCGTGGAAGTTGTGTCTGTGGAGGAAGGAGAAGAAGTTGAACAAATAGCAGGAGGAAGTCCAAGTGTTCAGAGCCGGTGTCCTCTCACTGCTCCGCTTGGTGTTTCTATGAGTCTTAGGAATGGAGCTACTAGAAAGTCTGTTTCCAATGTGTCTATGTGTAGCAGAAGTTTCAACCGCGAGACTTGTCAGAACAACGGTGAGCTACCTGATACAAGAACGCTGAGGAGTCGGTTGGAGAGGAGATTGGAGATGGAGGGGCTAAAGATAACTATGGACTCTGTTAGTCTTCTTAATAGCGGATTGGATGTGTTTATGAGAAGGCTGATTGAGCCTTGTTTGAGTTTGGCTAATACTCGATGTGGGACTGATCGGGTTAGAGAGATGAATTACCAGTATACACAGCAAAGCAGAAGGCTTTCATATGTATCGATGTCAGATTTTCGTGCTGGTATGGAGTTGAATACTGAGATACTTGGAGAAGATTGGCCTATGCATATGGAGAAGATCTGCTCCCGTGCTTCAGATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

342

Amino Acids

38.26

Weight (kDa)

9.66

Isoelectric Point (pI)

56.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAGA-Tad1 PF12767 7 - 281 1.1e-53 Transcriptional regulator of RNA polII, SAGA, subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
Acc36I ACCTGC 1 cut(s) 351
AccI GTMKAC 3 cut(s) 172, 490, 893
AccII CGCG 1 cut(s) 675
AciI CCGC 4 cut(s) 317, 590, 673, 795
AclWI GGATC 1 cut(s) 13
AcsI RAATTY 2 cut(s) 140, 309
AcuI CTGAAG 1 cut(s) 1002
AdeI CACNNNGTG 1 cut(s) 461
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 5 cut(s) 97, 124, 536, 670, 958
AjnI CCWGG 1 cut(s) 23
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AluBI AGCT 6 cut(s) 50, 83, 103, 267, 623, 700
AluI AGCT 6 cut(s) 50, 83, 103, 267, 623, 700
Alw26I GTCTC 3 cut(s) 372, 483, 671
AlwI GGATC 1 cut(s) 13
AoxI GGCC 2 cut(s) 383, 983
ApoI RAATTY 2 cut(s) 140, 309
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
Asp700I GAANNNNTTC 1 cut(s) 913
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 121, 707
AsuII TTCGAA 1 cut(s) 293
AvaII GGWCC 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 776
BbvCI CCTCAGC 1 cut(s) 719
BccI CCATC 3 cut(s) 192, 218, 742
BciT130I CCWGG 1 cut(s) 25
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 3 cut(s) 372, 483, 671
BfaI CTAG 2 cut(s) 482, 627
BfuAI ACCTGC 1 cut(s) 351
BglII AGATCT 1 cut(s) 1002
BisI GCNGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 318
Bme1390I CCNGG 2 cut(s) 25, 62
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmrFI CCNGG 2 cut(s) 25, 62
BmsI GCATC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 776
Bpu10I CCTNAGC 1 cut(s) 719
Bpu14I TTCGAA 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 62
Bsa29I ATCGAT 1 cut(s) 926
BsaJI CCNNGG 1 cut(s) 498
BsaXI ACNNNNNCTCC 4 cut(s) 431, 461, 516, 546
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse118I RCCGGY 1 cut(s) 570
Bse1I ACTGG 1 cut(s) 889
BseBI CCWGG 1 cut(s) 25
BseCI ATCGAT 1 cut(s) 926
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 2 cut(s) 180, 808
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 3 cut(s) 75, 710, 954
BseNI ACTGG 1 cut(s) 889
BseRI GAGGAG 3 cut(s) 452, 736, 751
Bsh1236I CGCG 1 cut(s) 675
BshFI GGCC 2 cut(s) 385, 985
BshVI ATCGAT 1 cut(s) 926
BsiSI CCGG 2 cut(s) 61, 571
BslFI GGGAC 1 cut(s) 874
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 3 cut(s) 372, 483, 671
BsmFI GGGAC 1 cut(s) 874
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 2 cut(s) 385, 985
Bsp119I TTCGAA 1 cut(s) 293
Bsp143I GATC 4 cut(s) 5, 126, 865, 1002
BspACI CCGC 4 cut(s) 317, 590, 673, 795
BspANI GGCC 2 cut(s) 385, 985
BspCNI CTCAG 3 cut(s) 76, 711, 955
BspDI ATCGAT 1 cut(s) 926
BspFNI CGCG 1 cut(s) 675
BspMI ACCTGC 1 cut(s) 351
BspPI GGATC 1 cut(s) 13
BspT104I TTCGAA 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 570
BsrI ACTGG 1 cut(s) 889
BssAI RCCGGY 1 cut(s) 570
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 4 cut(s) 5, 126, 865, 1002
BssNAI GTATAC 1 cut(s) 894
Bst1107I GTATAC 1 cut(s) 894
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 3 cut(s) 197, 305, 695
BstAPI GCANNNNNTGC 1 cut(s) 461
BstBI TTCGAA 1 cut(s) 293
BstDEI CTNAG 4 cut(s) 84, 611, 719, 963
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 2 cut(s) 180, 808
BstFNI CGCG 1 cut(s) 675
BstKTI GATC 4 cut(s) 8, 129, 868, 1005
BstMAI GTCTC 3 cut(s) 372, 483, 671
BstMBI GATC 4 cut(s) 5, 126, 865, 1002
BstMWI GCNNNNNNNGC 3 cut(s) 230, 461, 826
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 23, 60
BstUI CGCG 1 cut(s) 675
BstV2I GAAGAC 1 cut(s) 776
BstX2I RGATCY 1 cut(s) 1002
BstYI RGATCY 1 cut(s) 1002
BstZ17I GTATAC 1 cut(s) 894
Bsu15I ATCGAT 1 cut(s) 926
BsuRI GGCC 2 cut(s) 385, 985
BsuTUI ATCGAT 1 cut(s) 926
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 2 cut(s) 180, 808
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 1 cut(s) 582
BveI ACCTGC 1 cut(s) 351
Cfr10I RCCGGY 1 cut(s) 570
Cfr13I GGNCC 1 cut(s) 398
ClaI ATCGAT 1 cut(s) 926
CviAII CATG 1 cut(s) 323
DdeI CTNAG 4 cut(s) 84, 611, 719, 963
DpnI GATC 4 cut(s) 7, 128, 867, 1004
DpnII GATC 4 cut(s) 5, 126, 865, 1002
DraIII CACNNNGTG 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 1002
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 993
FaeI CATG 1 cut(s) 326
FaqI GGGAC 1 cut(s) 874
FatI CATG 1 cut(s) 322
FauNDI CATATG 2 cut(s) 919, 993
FblI GTMKAC 3 cut(s) 172, 490, 893
Fnu4HI GCNGC 1 cut(s) 317
FokI GGATG 2 cut(s) 167, 815
Fsp4HI GCNGC 1 cut(s) 317
FspBI CTAG 2 cut(s) 482, 627
GluI GCNGC 1 cut(s) 317
HaeIII GGCC 2 cut(s) 385, 985
HapII CCGG 2 cut(s) 61, 571
Hin1II CATG 1 cut(s) 326
HinfI GANTC 9 cut(s) 73, 111, 290, 329, 349, 440, 607, 724, 773
HpaII CCGG 2 cut(s) 61, 571
HphI GGTGA 2 cut(s) 121, 707
Hpy166II GTNNAC 5 cut(s) 173, 392, 401, 491, 894
Hpy188I TCNGA 6 cut(s) 107, 139, 567, 687, 934, 1021
Hpy188III TCNNGA 2 cut(s) 160, 217
Hpy8I GTNNAC 5 cut(s) 173, 392, 401, 491, 894
Hpy99I CGWCG 1 cut(s) 433
HpyAV CCTTC 4 cut(s) 354, 515, 810, 903
HpyCH4III ACNGT 3 cut(s) 197, 305, 695
HpyCH4IV ACGT 2 cut(s) 35, 205
HpyCH4V TGCA 3 cut(s) 156, 360, 991
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 461, 826
HpyF3I CTNAG 4 cut(s) 84, 611, 719, 963
HpySE526I ACGT 2 cut(s) 35, 205
Hsp92II CATG 1 cut(s) 326
Kzo9I GATC 4 cut(s) 5, 126, 865, 1002
LmnI GCTCC 4 cut(s) 264, 592, 620, 1013
LweI GCATC 1 cut(s) 165
MaeI CTAG 2 cut(s) 482, 627
MaeII ACGT 2 cut(s) 35, 205
MaeIII GTNAC 1 cut(s) 89
MalI GATC 4 cut(s) 7, 128, 867, 1004
MboI GATC 4 cut(s) 5, 126, 865, 1002
MflI RGATCY 1 cut(s) 1002
MluCI AATT 5 cut(s) 66, 140, 309, 470, 883
MlyI GAGTC 5 cut(s) 343, 449, 616, 733, 767
MmeI TCCRAC 1 cut(s) 711
MnlI CCTC 9 cut(s) 423, 430, 504, 511, 542, 588, 714, 729, 745
Mph1103I ATGCAT 1 cut(s) 993
MroXI GAANNNNTTC 1 cut(s) 913
MseI TTAA 3 cut(s) 45, 422, 789
MspI CCGG 2 cut(s) 61, 571
MspR9I CCNGG 2 cut(s) 25, 62
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 1 cut(s) 25
MvnI CGCG 1 cut(s) 675
MwoI GCNNNNNNNGC 3 cut(s) 230, 461, 826
NciI CCSGG 1 cut(s) 62
NdeI CATATG 2 cut(s) 919, 993
NdeII GATC 4 cut(s) 5, 126, 865, 1002
NlaIII CATG 1 cut(s) 326
NsiI ATGCAT 1 cut(s) 993
NspV TTCGAA 1 cut(s) 293
PctI GAATGC 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 913
PfeI GAWTC 4 cut(s) 73, 111, 290, 329
PkrI GCNGC 1 cut(s) 318
PleI GAGTC 5 cut(s) 343, 448, 615, 732, 767
PpsI GAGTC 5 cut(s) 343, 448, 615, 732, 767
PsiI TTATAA 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspPI GGNCC 1 cut(s) 398
PsuI RGATCY 1 cut(s) 1002
SaqAI TTAA 3 cut(s) 45, 422, 789
SatI GCNGC 1 cut(s) 317
Sau3AI GATC 4 cut(s) 5, 126, 865, 1002
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 5 cut(s) 343, 449, 616, 733, 767
ScrFI CCNGG 2 cut(s) 25, 62
SfaNI GCATC 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 293
SinI GGWCC 1 cut(s) 398
Sse9I AATT 5 cut(s) 66, 140, 309, 470, 883
SsiI CCGC 4 cut(s) 317, 590, 673, 795
SspMI CTAG 2 cut(s) 482, 627
StyD4I CCNGG 2 cut(s) 23, 60
TaaI ACNGT 3 cut(s) 197, 305, 695
TaiI ACGT 2 cut(s) 38, 208
TaqI TCGA 5 cut(s) 144, 293, 347, 853, 926
TasI AATT 5 cut(s) 66, 140, 309, 470, 883
TauI GCSGC 1 cut(s) 319
TfiI GAWTC 4 cut(s) 73, 111, 290, 329
Tru1I TTAA 3 cut(s) 45, 422, 789
Tru9I TTAA 3 cut(s) 45, 422, 789
TscAI CASTG 1 cut(s) 589
TspDTI ATGAA 4 cut(s) 179, 311, 896, 906
TspRI CASTG 1 cut(s) 589
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 2 cut(s) 140, 309
XmiI GTMKAC 3 cut(s) 172, 490, 893
XmnI GAANNNNTTC 1 cut(s) 913
XspI CTAG 2 cut(s) 482, 627
Zsp2I ATGCAT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.