pycom05g09550

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0004824
Physical Location & Seq
Reverse (-)
12740408 .. 12741463
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g09550.1

Sequence Viewer

Length: 1056 bp
ATGGTGCCCAATCAGAGCTATTCTCGTATCGACACTTTGGAGCTGAAAGCTCTAATTATCCAAAAGATTGGGCATCAGAGAGCTGACAAATACTTTGATCTGATGAGAAGATTGTTTAGTTCGAAGATTAGTAAGTGCGAATTCGACAAGTTTTGCAATCGGATTATTGGGAGGGACAATGCCTATCTTCATAACCTGCTTATTAAATCAATCCTCAAGAATGCCTGCCTTGCGAAAGTTCCGCCCTTGACCAGTGTTCGGAAAAGGGGAAGTACCCTTAATGTTAAAGTAGCAAATGGTTATCAGAAGGATGGTCTTCACTCGATTAATGCAGATGCATTTTCCCCATCCCCTCACAAGATCCTGTCTCCAGTTAATCGAGAACGCAAGTTTCAGGACCGCCCAAGGTCTTTGAGGCCGAATGGAAAGTCCCAACATTTTTCCAAAACACAAGAGCAGCAAAGTGCTACTGAATTGCTTTCTCTTGGAAGCAGGCCGCCTGTTGAAGTTGCCTCTGTAGAAGATGGAGAAGAGGTCGAACAGGATGCAGGAAGCCCAGCTATTCAAAGTAGAAGCCCTGTAACAGCTCCTCTCGGAATATATTTGGGTGGATCACGTAAAGCTCTTCCTAATGTATCAATATGTAGCACTTACCACCCTTTGACCTGTCAAAACAGTGGTGAGCTACCTGATGCCAGATCATTAAGAAGTCGTTTGGAGCGGAAGCTGGAGAAGGAGGGTATTAGTGTCGCTGTAGACTGTGCTGACCTCTTGAATAATGGATTGGATGCTTATCTGAAGAGGTTAATGGAACCTTGTATTCGGCTAGCTGGGACAAGGCATGGCAATGATCACTCAAAACAACTAAGTGGTCCATATCCGTACAACGATCGATCAAATGGGATGTCGCTTGGGAGATATATGCAAAGAGAAACAAAATCTACTTATGCAACCATGTCAGATTTTTCTTCATCAGTGGAGCTAAATCCCCAAATGCTTGGTGTAGATTGGCCCATACAGCTCGAGAAGATTGTCTTGCGTGCATCTGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

352

Amino Acids

39.2

Weight (kDa)

9.34

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAGA-Tad1 PF12767 5 - 276 3.1e-58 Transcriptional regulator of RNA polII, SAGA, subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 721
AccI GTMKAC 1 cut(s) 756
AciI CCGC 4 cut(s) 242, 400, 497, 721
AclWI GGATC 2 cut(s) 355, 619
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 818
AfaI GTAC 2 cut(s) 274, 884
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 3 cut(s) 506, 566, 775
AjuI GAANNNNNNNTTGG 2 cut(s) 767, 799
Alw26I GTCTC 1 cut(s) 372
AlwI GGATC 2 cut(s) 355, 619
Ama87I CYCGRG 1 cut(s) 1022
AoxI GGCC 3 cut(s) 416, 494, 1010
ApeKI GCWGC 1 cut(s) 457
ApoI RAATTY 1 cut(s) 140
ArsI GACNNNNNNTTYG 6 cut(s) 77, 109, 413, 445, 890, 922
AseI ATTAAT 1 cut(s) 327
AspS9I GGNCC 3 cut(s) 397, 872, 1011
AsuHPI GGTGA 1 cut(s) 692
AsuII TTCGAA 1 cut(s) 122
AsuNHI GCTAGC 1 cut(s) 826
AvaI CYCGRG 1 cut(s) 1022
AvaII GGWCC 2 cut(s) 397, 872
BaeGI GKGCMC 1 cut(s) 9
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 308
BbvI GCAGC 1 cut(s) 469
BccI CCATC 3 cut(s) 305, 355, 518
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BclI TGATCA 1 cut(s) 850
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 1 cut(s) 827
BfmI CTRYAG 2 cut(s) 516, 753
BfuAI ACCTGC 1 cut(s) 204
BisI GCNGC 2 cut(s) 458, 497
BlsI GCNGC 2 cut(s) 459, 498
Bme18I GGWCC 2 cut(s) 397, 872
BmeT110I CYCGRG 1 cut(s) 1022
BmgT120I GGNCC 3 cut(s) 397, 872, 1011
BmiI GGNNCC 2 cut(s) 6, 813
BmsI GCATC 6 cut(s) 82, 325, 535, 682, 778, 1052
BmtI GCTAGC 1 cut(s) 830
BpiI GAAGAC 1 cut(s) 308
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpmI CTGGAG 2 cut(s) 354, 749
Bpu14I TTCGAA 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 892
BsaAI YACGTR 1 cut(s) 617
BsaBI GATNNNNATC 1 cut(s) 792
BsaJI CCNNGG 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 519, 549
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 2 cut(s) 252, 371
Bse3DI GCAATG 1 cut(s) 853
Bse8I GATNNNNATC 1 cut(s) 792
BseCI ATCGAT 1 cut(s) 892
BseDI CCNNGG 1 cut(s) 404
BseGI GGATG 5 cut(s) 316, 347, 550, 793, 909
BseJI GATNNNNATC 1 cut(s) 792
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMI GCAATG 1 cut(s) 853
BseNI ACTGG 2 cut(s) 252, 371
BseRI GAGGAG 1 cut(s) 579
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 1 cut(s) 469
BseYI CCCAGC 2 cut(s) 556, 830
Bsh1285I CGRYCG 1 cut(s) 892
BshFI GGCC 3 cut(s) 418, 496, 1012
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 892
BsiEI CGRYCG 1 cut(s) 892
BsiHKCI CYCGRG 1 cut(s) 1022
BslFI GGGAC 3 cut(s) 188, 415, 847
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 3 cut(s) 188, 415, 847
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 3 cut(s) 418, 496, 1012
BsoBI CYCGRG 1 cut(s) 1022
Bsp119I TTCGAA 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 7 cut(s) 97, 360, 611, 698, 850, 889, 893
BspACI CCGC 4 cut(s) 242, 400, 497, 721
BspANI GGCC 3 cut(s) 418, 496, 1012
BspDI ATCGAT 1 cut(s) 892
BspLI GGNNCC 2 cut(s) 6, 813
BspMI ACCTGC 1 cut(s) 204
BspOI GCTAGC 1 cut(s) 830
BspPI GGATC 2 cut(s) 355, 619
BspQI GCTCTTC 1 cut(s) 630
BspT104I TTCGAA 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 721
BsrDI GCAATG 1 cut(s) 853
BsrI ACTGG 2 cut(s) 252, 371
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 7 cut(s) 97, 360, 611, 698, 850, 889, 893
BssT1I CCWWGG 1 cut(s) 404
Bst4CI ACNGT 2 cut(s) 677, 761
Bst6I CTCTTC 4 cut(s) 525, 630, 794, 1044
BstBAI YACGTR 1 cut(s) 617
BstBI TTCGAA 1 cut(s) 122
BstC8I GCNNGC 4 cut(s) 226, 494, 828, 1041
BstDEI CTNAG 1 cut(s) 866
BstF5I GGATG 5 cut(s) 316, 347, 550, 793, 909
BstKTI GATC 7 cut(s) 100, 363, 614, 701, 853, 892, 896
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 7 cut(s) 97, 360, 611, 698, 850, 889, 893
BstMCI CGRYCG 1 cut(s) 892
BstMWI GCNNNNNNNGC 2 cut(s) 230, 1018
BstSFI CTRYAG 2 cut(s) 516, 753
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 469
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 360
BstXI CCANNNNNNTGG 2 cut(s) 68, 998
BstYI RGATCY 1 cut(s) 360
Bsu15I ATCGAT 1 cut(s) 892
BsuRI GGCC 3 cut(s) 418, 496, 1012
BsuTUI ATCGAT 1 cut(s) 892
BtsCI GGATG 5 cut(s) 316, 347, 550, 793, 909
BtsIMutI CAGTG 3 cut(s) 259, 682, 981
BveI ACCTGC 1 cut(s) 204
Cac8I GCNNGC 4 cut(s) 226, 494, 828, 1041
Cfr13I GGNCC 3 cut(s) 397, 872, 1011
ClaI ATCGAT 1 cut(s) 892
Csp6I GTAC 2 cut(s) 273, 883
CviAII CATG 2 cut(s) 842, 955
CviQI GTAC 2 cut(s) 273, 883
DdeI CTNAG 1 cut(s) 866
DpnI GATC 7 cut(s) 99, 362, 613, 700, 852, 891, 895
DpnII GATC 7 cut(s) 97, 360, 611, 698, 850, 889, 893
Eam1104I CTCTTC 4 cut(s) 525, 630, 794, 1044
EarI CTCTTC 4 cut(s) 525, 630, 794, 1044
EciI GGCGGA 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 404
Eco47I GGWCC 2 cut(s) 397, 872
Eco57I CTGAAG 1 cut(s) 818
Eco88I CYCGRG 1 cut(s) 1022
EcoRI GAATTC 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 404
EcoT22I ATGCAT 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 2 cut(s) 845, 958
FalI AAGNNNNNCTT 2 cut(s) 1019, 1051
FaqI GGGAC 3 cut(s) 188, 415, 847
FatI CATG 2 cut(s) 841, 954
FbaI TGATCA 1 cut(s) 850
FblI GTMKAC 1 cut(s) 756
Fnu4HI GCNGC 2 cut(s) 458, 497
FokI GGATG 5 cut(s) 323, 334, 557, 800, 916
Fsp4HI GCNGC 2 cut(s) 458, 497
FspBI CTAG 1 cut(s) 827
GluI GCNGC 2 cut(s) 458, 497
GsaI CCCAGC 2 cut(s) 560, 834
GsuI CTGGAG 2 cut(s) 354, 749
HaeIII GGCC 3 cut(s) 418, 496, 1012
Hin1II CATG 2 cut(s) 845, 958
HphI GGTGA 1 cut(s) 692
Hpy166II GTNNAC 1 cut(s) 757
Hpy188III TCNNGA 5 cut(s) 217, 380, 395, 772, 1024
Hpy8I GTNNAC 1 cut(s) 757
HpyAV CCTTC 2 cut(s) 301, 727
HpyCH4III ACNGT 2 cut(s) 677, 761
HpyCH4IV ACGT 1 cut(s) 616
HpyCH4V TGCA 7 cut(s) 156, 332, 338, 548, 925, 950, 1043
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 1018
HpyF3I CTNAG 1 cut(s) 866
HpySE526I ACGT 1 cut(s) 616
Hsp92II CATG 2 cut(s) 845, 958
Ksp22I TGATCA 1 cut(s) 850
Kzo9I GATC 7 cut(s) 97, 360, 611, 698, 850, 889, 893
LguI GCTCTTC 1 cut(s) 630
LmnI GCTCC 4 cut(s) 40, 592, 718, 979
Lsp1109I GCAGC 1 cut(s) 469
LweI GCATC 6 cut(s) 82, 325, 535, 682, 778, 1052
MaeI CTAG 1 cut(s) 827
MaeII ACGT 1 cut(s) 616
MaeIII GTNAC 1 cut(s) 580
MalI GATC 7 cut(s) 99, 362, 613, 700, 852, 891, 895
MbiI CCGCTC 1 cut(s) 721
MboI GATC 7 cut(s) 97, 360, 611, 698, 850, 889, 893
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 3 cut(s) 54, 140, 473
Mph1103I ATGCAT 1 cut(s) 340
MseI TTAA 7 cut(s) 204, 279, 285, 327, 375, 704, 806
MslI CAYNNNNRTG 1 cut(s) 846
Mva1269I GAATGC 1 cut(s) 226
MwoI GCNNNNNNNGC 2 cut(s) 230, 1018
NdeII GATC 7 cut(s) 97, 360, 611, 698, 850, 889, 893
NheI GCTAGC 1 cut(s) 826
NlaIII CATG 2 cut(s) 845, 958
NlaIV GGNNCC 2 cut(s) 6, 813
NsiI ATGCAT 1 cut(s) 340
NspV TTCGAA 1 cut(s) 122
PaeR7I CTCGAG 1 cut(s) 1022
PciSI GCTCTTC 1 cut(s) 630
PctI GAATGC 1 cut(s) 226
PkrI GCNGC 2 cut(s) 459, 498
Ple19I CGATCG 1 cut(s) 892
Ppu21I YACGTR 1 cut(s) 617
PshBI ATTAAT 1 cut(s) 327
PspFI CCCAGC 2 cut(s) 556, 830
PspN4I GGNNCC 2 cut(s) 6, 813
PspPI GGNCC 3 cut(s) 397, 872, 1011
PsuI RGATCY 1 cut(s) 360
PvuI CGATCG 1 cut(s) 892
RsaI GTAC 2 cut(s) 274, 884
RsaNI GTAC 2 cut(s) 273, 883
RseI CAYNNNNRTG 1 cut(s) 846
SapI GCTCTTC 1 cut(s) 630
SaqAI TTAA 7 cut(s) 204, 279, 285, 327, 375, 704, 806
SatI GCNGC 2 cut(s) 458, 497
Sau3AI GATC 7 cut(s) 97, 360, 611, 698, 850, 889, 893
Sau96I GGNCC 3 cut(s) 397, 872, 1011
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 6 cut(s) 82, 325, 535, 682, 778, 1052
SfcI CTRYAG 2 cut(s) 516, 753
Sfr274I CTCGAG 1 cut(s) 1022
SfuI TTCGAA 1 cut(s) 122
SinI GGWCC 2 cut(s) 397, 872
SlaI CTCGAG 1 cut(s) 1022
SmiMI CAYNNNNRTG 1 cut(s) 846
SmlI CTYRAG 2 cut(s) 215, 1022
SmoI CTYRAG 2 cut(s) 215, 1022
Sse9I AATT 3 cut(s) 54, 140, 473
SsiI CCGC 4 cut(s) 242, 400, 497, 721
SspMI CTAG 1 cut(s) 827
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 2 cut(s) 677, 761
TaiI ACGT 1 cut(s) 619
TaqI TCGA 8 cut(s) 30, 122, 144, 323, 379, 537, 892, 1023
TasI AATT 3 cut(s) 54, 140, 473
TauI GCSGC 1 cut(s) 499
Tru1I TTAA 7 cut(s) 204, 279, 285, 327, 375, 704, 806
Tru9I TTAA 7 cut(s) 204, 279, 285, 327, 375, 704, 806
TscAI CASTG 3 cut(s) 259, 682, 981
TseI GCWGC 1 cut(s) 457
TspDTI ATGAA 2 cut(s) 179, 960
TspGWI ACGGA 1 cut(s) 870
TspRI CASTG 3 cut(s) 259, 682, 981
VpaK11BI GGWCC 2 cut(s) 397, 872
VspI ATTAAT 1 cut(s) 327
XapI RAATTY 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 1022
XmiI GTMKAC 1 cut(s) 756
XspI CTAG 1 cut(s) 827
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.